RNA–Protein interactions for RNA: ENST00000407343.3

PTPN12-202, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 704 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-202ENST00000407343 AEBP2Q6ZN18 517 aaPredicted RBP30.81■■■□□ 2.52
PTPN12-202ENST00000407343 CHIC1Q5VXU3 224 aa30.38■■■□□ 2.45
PTPN12-202ENST00000407343 PHF23Q9BUL5 403 aaPredicted RBP26.85■■□□□ 1.89
PTPN12-202ENST00000407343 SENP3Q9H4L4 574 aaPredicted RBP25.89■■□□□ 1.74
PTPN12-202ENST00000407343 PLPPR3Q6T4P5 718 aa24.76■■□□□ 1.55
PTPN12-202ENST00000407343 FOXD1Q16676 465 aa24.09■■□□□ 1.45
PTPN12-202ENST00000407343 PPP6R1Q9UPN7 881 aa23.55■■□□□ 1.36
PTPN12-202ENST00000407343 ADRA2BP18089 450 aa23.47■■□□□ 1.35
PTPN12-202ENST00000407343 PIAS4Q8N2W9 510 aaPredicted RBP22.71■■□□□ 1.23
PTPN12-202ENST00000407343 MSH5O43196 834 aa21.92■■□□□ 1.1
PTPN12-202ENST00000407343 KCNA4P22459 653 aa21.9■■□□□ 1.1
PTPN12-202ENST00000407343 PPP4R3CPQ6ZMV5 832 aa21.9■■□□□ 1.1
PTPN12-202ENST00000407343 NCBP3Q53F19 620 aaKnown RBP21.32■■□□□ 1
PTPN12-202ENST00000407343 SCAF1Q9H7N4 1312 aaKnown RBP21.29■■□□□ 1
PTPN12-202ENST00000407343 MAPK8IP2Q13387 824 aaPredicted RBP21.21■□□□□ 0.99
PTPN12-202ENST00000407343 NPM3O75607 178 aaKnown RBP21.17■□□□□ 0.98
PTPN12-202ENST00000407343 CNKSR2Q8WXI2 1034 aa21.17■□□□□ 0.98
PTPN12-202ENST00000407343 SLC4A1APQ9BWU0 796 aaKnown RBP20.84■□□□□ 0.93
PTPN12-202ENST00000407343 DMRT2Q9Y5R5 561 aa20.8■□□□□ 0.92
PTPN12-202ENST00000407343 EHMT2Q96KQ7 1210 aa20.69■□□□□ 0.9
PTPN12-202ENST00000407343 RNF216Q9NWF9 866 aaPredicted RBP20.69■□□□□ 0.9
PTPN12-202ENST00000407343 DNAJC5BQ9UF47 199 aa20.59■□□□□ 0.89
PTPN12-202ENST00000407343 HOXD11P31277 338 aaPredicted RBP20.56■□□□□ 0.88
PTPN12-202ENST00000407343 CSRNP3Q8WYN3 585 aa20.4■□□□□ 0.86
PTPN12-202ENST00000407343 ZBTB22O15209 634 aa20.26■□□□□ 0.83
PTPN12-202ENST00000407343 FOXD4L1Q9NU39 408 aa19.98■□□□□ 0.79
PTPN12-202ENST00000407343 SLC4A2P04920 1241 aa19.96■□□□□ 0.79
PTPN12-202ENST00000407343 DCAF8L1A6NGE4 600 aa19.69■□□□□ 0.74
PTPN12-202ENST00000407343 MYCNP04198 464 aaPredicted RBP19.48■□□□□ 0.71
PTPN12-202ENST00000407343 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.42■□□□□ 0.7
PTPN12-202ENST00000407343 POTEDQ86YR6 584 aa19.36■□□□□ 0.69
PTPN12-202ENST00000407343 U3KPZ7 1027 aaPredicted RBP19.32■□□□□ 0.68
PTPN12-202ENST00000407343 ATXN8OSP0DMR3 200 aa19.23■□□□□ 0.67
PTPN12-202ENST00000407343 ATF5Q9Y2D1 282 aaPredicted RBP19.07■□□□□ 0.64
PTPN12-202ENST00000407343 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.02■□□□□ 0.64
PTPN12-202ENST00000407343 HNRNPUL2Q1KMD3 747 aaKnown RBP19.02■□□□□ 0.64
PTPN12-202ENST00000407343 SAMD1Q6SPF0 538 aaPredicted RBP19.02■□□□□ 0.64
PTPN12-202ENST00000407343 RNF39Q9H2S5 420 aa18.93■□□□□ 0.62
PTPN12-202ENST00000407343 APLP2Q06481 763 aa18.67■□□□□ 0.58
PTPN12-202ENST00000407343 SPINK5Q9NQ38 1064 aaPredicted RBP18.65■□□□□ 0.58
PTPN12-202ENST00000407343 C1QBPQ07021 282 aaKnown RBP18.64■□□□□ 0.57
PTPN12-202ENST00000407343 ZNF219Q9P2Y4 722 aaPredicted RBP18.61■□□□□ 0.57
PTPN12-202ENST00000407343 TRHP20396 242 aaPredicted RBP18.44■□□□□ 0.54
PTPN12-202ENST00000407343 CAPN15O75808 1086 aa18.41■□□□□ 0.54
PTPN12-202ENST00000407343 FKBP8Q14318 412 aa18.31■□□□□ 0.52
PTPN12-202ENST00000407343 POLA2Q14181 598 aa18.28■□□□□ 0.52
PTPN12-202ENST00000407343 MKRN4PQ13434 485 aaPredicted RBP18.26■□□□□ 0.51
PTPN12-202ENST00000407343 ABCB7O75027 752 aa18.16■□□□□ 0.5
PTPN12-202ENST00000407343 DSG3P32926 999 aa18.15■□□□□ 0.5
PTPN12-202ENST00000407343 CACNB1Q02641 598 aaPredicted RBP18.01■□□□□ 0.47
PTPN12-202ENST00000407343 FBLN2P98095 1184 aa18■□□□□ 0.47
PTPN12-202ENST00000407343 ZBTB12Q9Y330 459 aaPredicted RBP17.92■□□□□ 0.46
PTPN12-202ENST00000407343 SPDYE4A6NLX3 237 aa17.9■□□□□ 0.46
PTPN12-202ENST00000407343 PROM2Q8N271 834 aa17.83■□□□□ 0.44
PTPN12-202ENST00000407343 OSCARQ8IYS5 282 aa17.68■□□□□ 0.42
PTPN12-202ENST00000407343 SSUH2Q9Y2M2 353 aa17.55■□□□□ 0.4
PTPN12-202ENST00000407343 SPDYE2BA6NHP3 402 aa17.54■□□□□ 0.4
PTPN12-202ENST00000407343 SPDYE6P0CI01 402 aa17.54■□□□□ 0.4
PTPN12-202ENST00000407343 SPDYE2Q495Y8 402 aa17.54■□□□□ 0.4
PTPN12-202ENST00000407343 ZNF692Q9BU19 519 aaPredicted RBP17.5■□□□□ 0.39
PTPN12-202ENST00000407343 FBXO3Q9UK99 471 aa17.45■□□□□ 0.38
PTPN12-202ENST00000407343 RTN4Q9NQC3 1192 aaKnown RBP17.43■□□□□ 0.38
PTPN12-202ENST00000407343 AMER1Q5JTC6 1135 aaPredicted RBP17.34■□□□□ 0.37
PTPN12-202ENST00000407343 VASPP50552 380 aaPredicted RBP17.32■□□□□ 0.36
PTPN12-202ENST00000407343 PABPN1Q86U42 306 aaKnown RBP eCLIP17.32■□□□□ 0.36
PTPN12-202ENST00000407343 IFNLR1Q8IU57 520 aaPredicted RBP17.17■□□□□ 0.34
PTPN12-202ENST00000407343 RBM42Q9BTD8 480 aaKnown RBP17.14■□□□□ 0.33
PTPN12-202ENST00000407343 STAG3Q9UJ98 1225 aa17.1■□□□□ 0.33
PTPN12-202ENST00000407343 AKT1S1Q96B36 256 aa17.07■□□□□ 0.32
PTPN12-202ENST00000407343 REM2Q8IYK8 340 aaPredicted RBP16.95■□□□□ 0.3
PTPN12-202ENST00000407343 SPDYE1Q8NFV5 336 aaPredicted RBP16.89■□□□□ 0.29
PTPN12-202ENST00000407343 PLCD3Q8N3E9 789 aa16.86■□□□□ 0.29
PTPN12-202ENST00000407343 MIER1Q8N108 512 aa16.85■□□□□ 0.29
PTPN12-202ENST00000407343 SPOCK2Q92563 424 aa16.79■□□□□ 0.28
PTPN12-202ENST00000407343 PKD2Q13563 968 aa16.78■□□□□ 0.28
PTPN12-202ENST00000407343 KLHL34Q8N239 644 aa16.78■□□□□ 0.28
PTPN12-202ENST00000407343 PITPNM1O00562 1244 aa16.77■□□□□ 0.28
PTPN12-202ENST00000407343 CLEC11AQ9Y240 323 aa16.76■□□□□ 0.27
PTPN12-202ENST00000407343 CREBZFQ9NS37 354 aa16.7■□□□□ 0.26
PTPN12-202ENST00000407343 PRR29P0C7W0 189 aa16.68■□□□□ 0.26
PTPN12-202ENST00000407343 MNX1P50219 401 aaPredicted RBP16.65■□□□□ 0.26
PTPN12-202ENST00000407343 PLEKHG5O94827 1062 aa16.62■□□□□ 0.25
PTPN12-202ENST00000407343 ZBTB47Q9UFB7 747 aaPredicted RBP16.62■□□□□ 0.25
PTPN12-202ENST00000407343 NUBP1P53384 320 aa16.55■□□□□ 0.24
PTPN12-202ENST00000407343 ECM2O94769 699 aaPredicted RBP16.45■□□□□ 0.22
PTPN12-202ENST00000407343 CHADLQ6NUI6 762 aa16.42■□□□□ 0.22
PTPN12-202ENST00000407343 CIZ1Q9ULV3 898 aaPredicted RBP16.41■□□□□ 0.22
PTPN12-202ENST00000407343 FXR2P51116 673 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTPN12-202ENST00000407343 RGL2O15211 777 aa16.39■□□□□ 0.21
PTPN12-202ENST00000407343 RASEFQ8IZ41 740 aa16.37■□□□□ 0.21
PTPN12-202ENST00000407343 CHRDL2Q6WN34 429 aa16.34■□□□□ 0.21
PTPN12-202ENST00000407343 GSE1Q14687 1217 aa16.32■□□□□ 0.2
PTPN12-202ENST00000407343 SLC24A1O60721 1099 aa16.31■□□□□ 0.2
PTPN12-202ENST00000407343 PRKAR2AP13861 404 aaKnown RBP16.29■□□□□ 0.2
PTPN12-202ENST00000407343 FARP1Q9Y4F1 1045 aaPredicted RBP16.29■□□□□ 0.2
PTPN12-202ENST00000407343 TRIM41Q8WV44 630 aa16.28■□□□□ 0.2
PTPN12-202ENST00000407343 DCAF8L2P0C7V8 631 aa16.27■□□□□ 0.2
PTPN12-202ENST00000407343 RNF25Q96BH1 459 aaPredicted RBP16.27■□□□□ 0.2
PTPN12-202ENST00000407343 NPM1P06748 294 aaKnown RBP eCLIP16.26■□□□□ 0.19
PTPN12-202ENST00000407343 DCAF8Q5TAQ9 597 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms