Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 HNRNPA2B1-202ENST00000356674 1711 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.362e-7■■■■□ 21.3
SF3B1O75533 HNRNPA2B1-208ENST00000618183 3539 ntTSL 5 BASIC11.02□□□□□ -0.652e-7■■■■□ 21.3
SF3B1O75533 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.112e-7■■■■□ 21.3
SF3B1O75533 GALNT11-212ENST00000482812 580 ntTSL 425.4■■□□□ 1.666e-8■■■■□ 21.2
SF3B1O75533 GALNT11-209ENST00000446096 521 ntTSL 319.04■□□□□ 0.646e-8■■■■□ 21.2
SF3B1O75533 GALNT11-210ENST00000447778 1231 ntTSL 519.03■□□□□ 0.646e-8■■■■□ 21.2
SF3B1O75533 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.46e-8■■■■□ 21.2
SF3B1O75533 GALNT11-206ENST00000431668 626 ntTSL 316.87■□□□□ 0.296e-8■■■■□ 21.2
SF3B1O75533 GALNT11-204ENST00000423337 580 ntTSL 315.56■□□□□ 0.086e-8■■■■□ 21.2
SF3B1O75533 GALNT11-208ENST00000434507 2747 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.466e-8■■■■□ 21.2
SF3B1O75533 SF1-219ENST00000496969 455 ntTSL 39.25□□□□□ -0.936e-8■■■■□ 21.2
SF3B1O75533 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.74□□□□□ -1.176e-8■■■■□ 21.2
SF3B1O75533 HNRNPK-207ENST00000472778 822 ntTSL 36.9□□□□□ -1.35e-6■■■■□ 21.2
SF3B1O75533 SF1-217ENST00000486960 719 ntTSL 25.26□□□□□ -1.576e-8■■■■□ 21.2
SF3B1O75533 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.342e-6■■■■□ 21.2
SF3B1O75533 ACADM-211ENST00000528016 546 ntTSL 420.22■□□□□ 0.833e-6■■■■□ 21.1
SF3B1O75533 BRD8-211ENST00000441656 2899 ntTSL 56.25□□□□□ -1.417e-6■■■■□ 21.1
SF3B1O75533 FUS-203ENST00000474990 827 ntTSL 324.96■■□□□ 1.596e-7■■■■□ 21.1
SF3B1O75533 PRRC2C-205ENST00000463586 3771 ntTSL 26.49□□□□□ -1.371e-11■■■■□ 21.1
SF3B1O75533 HSPA9-212ENST00000523929 780 ntTSL 415.61■□□□□ 0.093e-6■■■■□ 21
SF3B1O75533 HSPA9-202ENST00000501917 275 ntTSL 32.96□□□□□ -1.933e-6■■■■□ 21
SF3B1O75533 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.134e-6■■■■□ 21
SF3B1O75533 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)17.74■□□□□ 0.434e-6■■■■□ 21
SF3B1O75533 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)15.14■□□□□ 0.014e-6■■■■□ 21
SF3B1O75533 NELFCD-204ENST00000474543 2047 ntTSL 514.73□□□□□ -0.054e-6■■■■□ 21
SF3B1O75533 TTLL3-233ENST00000602338 693 nt13.23□□□□□ -0.292e-15■■■■□ 20.9
SF3B1O75533 TTLL3-231ENST00000496246 507 ntTSL 412.41□□□□□ -0.422e-15■■■■□ 20.9
SF3B1O75533 TTLL3-226ENST00000474948 603 ntTSL 410.31□□□□□ -0.762e-15■■■■□ 20.9
SF3B1O75533 TTLL3-220ENST00000452823 579 ntTSL 38.96□□□□□ -0.982e-15■■■■□ 20.9
SF3B1O75533 CIZ1-201ENST00000277465 2742 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.474e-6■■■■□ 20.9
SF3B1O75533 CIZ1-207ENST00000393608 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.544e-6■■■■□ 20.9
SF3B1O75533 CIZ1-208ENST00000415526 2508 ntAPPRIS ALT2 TSL 1 (best)10.84□□□□□ -0.674e-6■■■■□ 20.9
SF3B1O75533 SLC1A5-206ENST00000598022 276 ntTSL 314.9□□□□□ -0.023e-6■■■■□ 20.9
SF3B1O75533 STAG3L5P-PVRIG2P-PILRB-204ENST00000472646 553 ntTSL 512.07□□□□□ -0.484e-8■■■■□ 20.9
SF3B1O75533 TBL1XR1-225ENST00000636187 171 ntTSL 519.24■□□□□ 0.672e-6■■■■□ 20.9
SF3B1O75533 SRSF4-202ENST00000466448 1264 ntAPPRIS ALT2 TSL 320.85■□□□□ 0.931e-6■■■■□ 20.9
SF3B1O75533 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.891e-6■■■■□ 20.9
SF3B1O75533 CDC45-211ENST00000491520 723 ntTSL 520.83■□□□□ 0.931e-6■■■■□ 20.8
SF3B1O75533 CDC45-207ENST00000455750 568 ntTSL 214.17□□□□□ -0.141e-6■■■■□ 20.8
SF3B1O75533 RPL17-210ENST00000581091 573 ntTSL 212.72□□□□□ -0.373e-6■■■■□ 20.8
SF3B1O75533 RPL17-C18orf32-202ENST00000577910 1012 ntTSL 57.74□□□□□ -1.173e-6■■■■□ 20.8
SF3B1O75533 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC7.4□□□□□ -1.223e-6■■■■□ 20.8
SF3B1O75533 RNF111-205ENST00000559160 900 ntTSL 324.76■■□□□ 1.557e-7■■■■□ 20.8
SF3B1O75533 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.65■■□□□ 1.067e-7■■■■□ 20.8
SF3B1O75533 ATG4B-217ENST00000475693 2237 ntTSL 219.09■□□□□ 0.657e-7■■■■□ 20.8
SF3B1O75533 RNF111-208ENST00000559757 541 ntTSL 418.55■□□□□ 0.567e-7■■■■□ 20.8
SF3B1O75533 ATG4B-201ENST00000344376 1566 ntTSL 517.61■□□□□ 0.417e-7■■■■□ 20.8
SF3B1O75533 ATG4B-225ENST00000494465 2365 ntTSL 517.1■□□□□ 0.337e-7■■■■□ 20.8
SF3B1O75533 TRIT1-209ENST00000486825 850 ntTSL 517.07■□□□□ 0.327e-7■■■■□ 20.8
SF3B1O75533 ATG4B-213ENST00000460211 871 ntTSL 216.29■□□□□ 0.27e-7■■■■□ 20.8
SF3B1O75533 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.177e-7■■■■□ 20.8
SF3B1O75533 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.167e-7■■■■□ 20.8
SF3B1O75533 ATG4B-224ENST00000494132 828 ntTSL 216.05■□□□□ 0.167e-7■■■■□ 20.8
SF3B1O75533 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.27■□□□□ 0.047e-7■■■■□ 20.8
SF3B1O75533 ATG4B-220ENST00000482507 2414 ntTSL 1 (best)15.18■□□□□ 0.027e-7■■■■□ 20.8
SF3B1O75533 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.91□□□□□ -0.027e-7■■■■□ 20.8
SF3B1O75533 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC14.05□□□□□ -0.167e-7■■■■□ 20.8
SF3B1O75533 DAZAP1-208ENST00000589874 3642 nt13.9□□□□□ -0.187e-7■■■■□ 20.8
SF3B1O75533 WDR45B-202ENST00000571767 789 ntTSL 213.79□□□□□ -0.27e-7■■■■□ 20.8
SF3B1O75533 TRIT1-205ENST00000462797 2000 ntTSL 513.67□□□□□ -0.227e-7■■■■□ 20.8
SF3B1O75533 TRIT1-212ENST00000492612 983 ntTSL 513.52□□□□□ -0.257e-7■■■■□ 20.8
SF3B1O75533 TRIT1-201ENST00000316891 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.267e-7■■■■□ 20.8
SF3B1O75533 NRIP1-205ENST00000637630 573 ntTSL 313.37□□□□□ -0.277e-7■■■■□ 20.8
SF3B1O75533 NRIP1-207ENST00000638122 543 ntTSL 1 (best)13.17□□□□□ -0.37e-7■■■■□ 20.8
SF3B1O75533 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.337e-7■■■■□ 20.8
SF3B1O75533 TRIT1-215ENST00000541099 545 ntTSL 1 (best) BASIC12.64□□□□□ -0.397e-7■■■■□ 20.8
SF3B1O75533 TRIT1-213ENST00000495175 1156 ntTSL 1 (best)12□□□□□ -0.497e-7■■■■□ 20.8
SF3B1O75533 NRIP1-206ENST00000637963 498 ntTSL 411.58□□□□□ -0.567e-7■■■■□ 20.8
SF3B1O75533 RNF111-202ENST00000557998 4803 ntTSL 2 BASIC11.08□□□□□ -0.647e-7■■■■□ 20.8
SF3B1O75533 TRIT1-211ENST00000491865 738 ntTSL 510.8□□□□□ -0.687e-7■■■■□ 20.8
SF3B1O75533 NRIP1-202ENST00000400199 7562 ntAPPRIS P1 TSL 3 BASIC10.65□□□□□ -0.77e-7■■■■□ 20.8
SF3B1O75533 TRIT1-203ENST00000441669 1851 ntTSL 1 (best) BASIC10.28□□□□□ -0.767e-7■■■■□ 20.8
SF3B1O75533 TRIT1-210ENST00000489945 861 ntTSL 58.8□□□□□ -17e-7■■■■□ 20.8
SF3B1O75533 CHD2-213ENST00000628118 585 ntTSL 1 (best)8.72□□□□□ -1.017e-7■■■■□ 20.8
SF3B1O75533 CHD2-224ENST00000636410 100 ntTSL 55.75□□□□□ -1.497e-7■■■■□ 20.8
SF3B1O75533 CHD2-204ENST00000625463 340 ntTSL 1 (best)5.14□□□□□ -1.597e-7■■■■□ 20.8
SF3B1O75533 ANLN-205ENST00000428612 707 ntTSL 54.77□□□□□ -1.657e-7■■■■□ 20.8
SF3B1O75533 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.687e-7■■■■□ 20.8
SF3B1O75533 ANLN-210ENST00000457743 757 ntTSL 54.56□□□□□ -1.687e-7■■■■□ 20.8
SF3B1O75533 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.94□□□□□ -1.787e-7■■■■□ 20.8
SF3B1O75533 WDR45B-207ENST00000573656 654 ntTSL 23.79□□□□□ -1.87e-7■■■■□ 20.8
SF3B1O75533 LRPPRC-207ENST00000467058 557 ntTSL 35.36□□□□□ -1.551e-6■■■■□ 20.8
SF3B1O75533 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.442e-6■■■■□ 20.7
SF3B1O75533 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC12.08□□□□□ -0.482e-6■■■■□ 20.7
SF3B1O75533 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.542e-6■■■■□ 20.7
SF3B1O75533 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.722e-6■■■■□ 20.7
SF3B1O75533 DDX39B-215ENST00000462256 4027 ntTSL 29.98□□□□□ -0.812e-6■■■■□ 20.7
SF3B1O75533 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.453e-6■■■■□ 20.7
SF3B1O75533 COMT-210ENST00000467943 546 ntTSL 226.37■■□□□ 1.813e-6■■■■□ 20.7
SF3B1O75533 TRAF4-207ENST00000461195 787 ntTSL 224.59■■□□□ 1.533e-6■■■■□ 20.7
SF3B1O75533 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.98■■□□□ 1.433e-6■■■■□ 20.7
SF3B1O75533 TRAF4-204ENST00000422344 631 ntTSL 323.97■■□□□ 1.433e-6■■■■□ 20.7
SF3B1O75533 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.81■■□□□ 1.43e-6■■■■□ 20.7
SF3B1O75533 TRAF4-203ENST00000394925 702 ntTSL 223.41■■□□□ 1.343e-6■■■■□ 20.7
SF3B1O75533 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC23.38■■□□□ 1.333e-6■■■■□ 20.7
SF3B1O75533 PIEZO1-209ENST00000490756 446 ntTSL 322.54■■□□□ 1.23e-6■■■■□ 20.7
SF3B1O75533 RPL36-207ENST00000582463 239 ntTSL 521.97■■□□□ 1.113e-6■■■■□ 20.7
SF3B1O75533 ACAP3-213ENST00000493992 326 ntTSL 521.87■■□□□ 1.093e-6■■■■□ 20.7
SF3B1O75533 RPL36-208ENST00000590786 907 ntTSL 221.83■■□□□ 1.093e-6■■■■□ 20.7
SF3B1O75533 TRAF4-216ENST00000586813 789 ntTSL 321.41■■□□□ 1.023e-6■■■■□ 20.7
Retrieved 100 of 46,956 protein–RNA pairs in 4322.2 ms