RNA–Protein interactions for RNA: ENST00000466448.4

SRSF4-202, Transcript of serine and arginine rich splicing factor 4, humanhuman

APPRIS ALT2 TSL 3

Gene SRSF4, Length 1,264 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF4-202ENST00000466448 NISCHQ9Y2I1 1504 aa47.49■■■■■ 5.19
SRSF4-202ENST00000466448 ABCC9O60706 1549 aa42.81■■■■■ 4.44
SRSF4-202ENST00000466448 CCDC180Q9P1Z9 1646 aa42.62■■■■■ 4.41
SRSF4-202ENST00000466448 RB1CC1Q8TDY2 1594 aa40.65■■■■■ 4.1
SRSF4-202ENST00000466448 NACADO15069 1562 aa40.35■■■■■ 4.05
SRSF4-202ENST00000466448 DNAJC5BQ9UF47 199 aa40.3■■■■■ 4.04
SRSF4-202ENST00000466448 DCAF8L2P0C7V8 631 aa40.13■■■■■ 4.01
SRSF4-202ENST00000466448 PABPN1Q86U42 306 aaKnown RBP eCLIP39.85■■■■□ 3.972e-8■□□□□ 8.2
SRSF4-202ENST00000466448 MYO15BQ96JP2 1530 aa39.76■■■■□ 3.96
SRSF4-202ENST00000466448 UNC13AQ9UPW8 1703 aa39.66■■■■□ 3.94
SRSF4-202ENST00000466448 BICRAQ9NZM4 1560 aa39.5■■■■□ 3.91
SRSF4-202ENST00000466448 ZCCHC6Q5VYS8 1495 aaKnown RBP39.34■■■■□ 3.89
SRSF4-202ENST00000466448 DCAF1Q9Y4B6 1507 aa39.21■■■■□ 3.87
SRSF4-202ENST00000466448 SHROOM4Q9ULL8 1493 aa38.95■■■■□ 3.83
SRSF4-202ENST00000466448 SCRIBQ14160 1630 aa38.86■■■■□ 3.81
SRSF4-202ENST00000466448 CC2D2AQ9P2K1 1620 aa38.64■■■■□ 3.78
SRSF4-202ENST00000466448 CECR2Q9BXF3 1484 aa38.58■■■■□ 3.77
SRSF4-202ENST00000466448 EIF4G1Q04637 1599 aaKnown RBP38.54■■■■□ 3.76
SRSF4-202ENST00000466448 NCAPD3P42695 1498 aa37.28■■■■□ 3.56
SRSF4-202ENST00000466448 ATAD2BQ9ULI0 1458 aa37.15■■■■□ 3.54
SRSF4-202ENST00000466448 DNAJC5Q9H3Z4 198 aa37.07■■■■□ 3.52
SRSF4-202ENST00000466448 SMARCA4P51532 1647 aa37.06■■■■□ 3.52
SRSF4-202ENST00000466448 SMARCA2P51531 1590 aa37.01■■■■□ 3.52
SRSF4-202ENST00000466448 HMGXB3Q12766 1538 aa36.98■■■■□ 3.51
SRSF4-202ENST00000466448 ERCC6Q03468 1493 aa36.95■■■■□ 3.51
SRSF4-202ENST00000466448 CUX2O14529 1486 aa36.94■■■■□ 3.5
SRSF4-202ENST00000466448 BAZ1AQ9NRL2 1556 aaPredicted RBP36.86■■■■□ 3.49
SRSF4-202ENST00000466448 BAZ1BQ9UIG0 1483 aaKnown RBP36.77■■■■□ 3.48
SRSF4-202ENST00000466448 NESP48681 1621 aa36.74■■■■□ 3.47
SRSF4-202ENST00000466448 PEG3Q9GZU2 1588 aa36.71■■■■□ 3.47
SRSF4-202ENST00000466448 MROH2BQ7Z745 1585 aa36.6■■■■□ 3.45
SRSF4-202ENST00000466448 LAMC3Q9Y6N6 1575 aa36.43■■■■□ 3.42
SRSF4-202ENST00000466448 THOC2Q8NI27 1593 aaKnown RBP36.38■■■■□ 3.41
SRSF4-202ENST00000466448 PDS5BQ9NTI5 1447 aa36.24■■■■□ 3.39
SRSF4-202ENST00000466448 KIF21AQ7Z4S6 1674 aa36.2■■■■□ 3.39
SRSF4-202ENST00000466448 CADPSQ9ULU8 1353 aa36.14■■■■□ 3.38
SRSF4-202ENST00000466448 WIZO95785 1651 aa36.12■■■■□ 3.37
SRSF4-202ENST00000466448 MRC2Q9UBG0 1479 aa35.95■■■■□ 3.35
SRSF4-202ENST00000466448 WDR62O43379 1518 aa35.87■■■■□ 3.33
SRSF4-202ENST00000466448 RSF1Q96T23 1441 aaPredicted RBP35.8■■■■□ 3.32
SRSF4-202ENST00000466448 CEP164Q9UPV0 1460 aa35.77■■■■□ 3.32
SRSF4-202ENST00000466448 FANCD2Q9BXW9 1451 aa35.73■■■■□ 3.31
SRSF4-202ENST00000466448 CFTRP13569 1480 aa35.71■■■■□ 3.31
SRSF4-202ENST00000466448 TOP2AP11388 1531 aaKnown RBP35.67■■■■□ 3.3
SRSF4-202ENST00000466448 URB2Q14146 1524 aaKnown RBP35.46■■■■□ 3.27
SRSF4-202ENST00000466448 TRIM41Q8WV44 630 aa35.39■■■■□ 3.26
SRSF4-202ENST00000466448 CCDC88BA6NC98 1476 aa35.29■■■■□ 3.24
SRSF4-202ENST00000466448 OSCARQ8IYS5 282 aa35.22■■■■□ 3.23
SRSF4-202ENST00000466448 PRDM2Q13029 1718 aa35.21■■■■□ 3.23
SRSF4-202ENST00000466448 IFT140Q96RY7 1462 aa35.06■■■■□ 3.2
SRSF4-202ENST00000466448 ZNF608Q9ULD9 1512 aaPredicted RBP35.05■■■■□ 3.2
SRSF4-202ENST00000466448 TOPBP1Q92547 1522 aa35.04■■■■□ 3.2
SRSF4-202ENST00000466448 ABCC8Q09428 1581 aa34.91■■■■□ 3.18
SRSF4-202ENST00000466448 DNMBPQ6XZF7 1577 aa34.88■■■■□ 3.17
SRSF4-202ENST00000466448 EIF4G3O43432 1585 aaKnown RBP34.82■■■■□ 3.16
SRSF4-202ENST00000466448 RIMBP3CA6NJZ7 1639 aa34.77■■■■□ 3.16
SRSF4-202ENST00000466448 RIMBP3BA6NNM3 1639 aa34.77■■■■□ 3.16
SRSF4-202ENST00000466448 RIMBP3Q9UFD9 1639 aa34.77■■■■□ 3.16
SRSF4-202ENST00000466448 TARBP1Q13395 1621 aaKnown RBP34.73■■■■□ 3.15
SRSF4-202ENST00000466448 AQRO60306 1485 aaKnown RBP eCLIP34.71■■■■□ 3.151e-7■■■□□ 17.3
SRSF4-202ENST00000466448 POLA1P09884 1462 aaPredicted RBP34.68■■■■□ 3.14
SRSF4-202ENST00000466448 ARHGEF11O15085 1522 aa34.67■■■■□ 3.14
SRSF4-202ENST00000466448 RAD54L2Q9Y4B4 1467 aa34.56■■■■□ 3.12
SRSF4-202ENST00000466448 CHD1O14646 1710 aa34.53■■■■□ 3.12
SRSF4-202ENST00000466448 SOGA1O94964 1423 aa34.51■■■■□ 3.12
SRSF4-202ENST00000466448 FBLN2P98095 1184 aa34.49■■■■□ 3.11
SRSF4-202ENST00000466448 TDRD9Q8NDG6 1382 aaKnown RBP34.48■■■■□ 3.11
SRSF4-202ENST00000466448 FGD5Q6ZNL6 1462 aa34.45■■■■□ 3.1
SRSF4-202ENST00000466448 CYB5RLQ6IPT4 315 aa34.42■■■■□ 3.1
SRSF4-202ENST00000466448 CUX1P39880 1505 aa34.39■■■■□ 3.1
SRSF4-202ENST00000466448 SNAPC4Q5SXM2 1469 aa34.34■■■■□ 3.09
SRSF4-202ENST00000466448 WDR97A6NE52 1622 aa34.33■■■■□ 3.09
SRSF4-202ENST00000466448 ARAP1Q96P48 1450 aa34.33■■■■□ 3.09
SRSF4-202ENST00000466448 MAGI1Q96QZ7 1491 aaPredicted RBP34.23■■■■□ 3.07
SRSF4-202ENST00000466448 GRIN2BQ13224 1484 aa34.22■■■■□ 3.07
SRSF4-202ENST00000466448 CHMP7Q8WUX9 453 aaPredicted RBP34.21■■■■□ 3.07
SRSF4-202ENST00000466448 CLASP1Q7Z460 1538 aa34.2■■■■□ 3.07
SRSF4-202ENST00000466448 SYNJ1O43426 1573 aa34.14■■■■□ 3.06
SRSF4-202ENST00000466448 SYNJ2O15056 1496 aa34.14■■■■□ 3.06
SRSF4-202ENST00000466448 SUPT5HO00267 1087 aaKnown RBP34.11■■■■□ 3.05
SRSF4-202ENST00000466448 GAPVD1Q14C86 1478 aa34.07■■■■□ 3.05
SRSF4-202ENST00000466448 TRHP20396 242 aaPredicted RBP34.07■■■■□ 3.04
SRSF4-202ENST00000466448 ABCA10Q8WWZ4 1543 aa34.04■■■■□ 3.04
SRSF4-202ENST00000466448 PBRM1Q86U86 1689 aa34.02■■■■□ 3.04
SRSF4-202ENST00000466448 ABCA5Q8WWZ7 1642 aa33.99■■■■□ 3.03
SRSF4-202ENST00000466448 WRNQ14191 1432 aaPredicted RBP eCLIP33.88■■■■□ 3.01
SRSF4-202ENST00000466448 GRIN2AQ12879 1464 aa33.79■■■■□ 3
SRSF4-202ENST00000466448 TOP2BQ02880 1626 aa33.79■■■■□ 3
SRSF4-202ENST00000466448 BIVM-ERCC5R4GMW8 1640 aa33.77■■■■□ 3
SRSF4-202ENST00000466448 ADAMTS12P58397 1594 aa33.75■■■□□ 2.99
SRSF4-202ENST00000466448 NUP160Q12769 1436 aa33.69■■■□□ 2.98
SRSF4-202ENST00000466448 CEP170Q5SW79 1584 aa33.68■■■□□ 2.98
SRSF4-202ENST00000466448 ERCC6L2Q5T890 1561 aa33.67■■■□□ 2.98
SRSF4-202ENST00000466448 FHAD1B1AJZ9 1412 aa33.65■■■□□ 2.98
SRSF4-202ENST00000466448 ERICH3Q5RHP9 1530 aa33.6■■■□□ 2.97
SRSF4-202ENST00000466448 SHROOM2Q13796 1616 aa33.53■■■□□ 2.96
SRSF4-202ENST00000466448 PRG4Q92954 1404 aaPredicted RBP33.37■■■□□ 2.93
SRSF4-202ENST00000466448 JPH4Q96JJ6 628 aa33.32■■■□□ 2.92
SRSF4-202ENST00000466448 RUSC2Q8N2Y8 1516 aa33.28■■■□□ 2.92
SRSF4-202ENST00000466448 IGF1RP08069 1367 aa33.16■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms