RNA–Protein interactions for RNA: ENST00000344376.9

ATG4B-201, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 1,566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-201ENST00000344376 NISCHQ9Y2I1 1504 aa39.36■■■■□ 3.89
ATG4B-201ENST00000344376 CCDC180Q9P1Z9 1646 aa35.11■■■■□ 3.21
ATG4B-201ENST00000344376 ABCC9O60706 1549 aa34.6■■■■□ 3.13
ATG4B-201ENST00000344376 RB1CC1Q8TDY2 1594 aa33.2■■■□□ 2.91
ATG4B-201ENST00000344376 NACADO15069 1562 aa33.09■■■□□ 2.89
ATG4B-201ENST00000344376 DCAF8L2P0C7V8 631 aa33.03■■■□□ 2.88
ATG4B-201ENST00000344376 MYO15BQ96JP2 1530 aa32.8■■■□□ 2.84
ATG4B-201ENST00000344376 ZCCHC6Q5VYS8 1495 aaKnown RBP32.73■■■□□ 2.83
ATG4B-201ENST00000344376 DCAF1Q9Y4B6 1507 aa32.56■■■□□ 2.8
ATG4B-201ENST00000344376 UNC13AQ9UPW8 1703 aa32.32■■■□□ 2.76
ATG4B-201ENST00000344376 PABPN1Q86U42 306 aaKnown RBP eCLIP32.28■■■□□ 2.76
ATG4B-201ENST00000344376 BICRAQ9NZM4 1560 aa32.12■■■□□ 2.73
ATG4B-201ENST00000344376 SCRIBQ14160 1630 aa32.01■■■□□ 2.72
ATG4B-201ENST00000344376 DNAJC5BQ9UF47 199 aa31.92■■■□□ 2.7
ATG4B-201ENST00000344376 SHROOM4Q9ULL8 1493 aa31.87■■■□□ 2.69
ATG4B-201ENST00000344376 EIF4G1Q04637 1599 aaKnown RBP31.34■■■□□ 2.61
ATG4B-201ENST00000344376 CC2D2AQ9P2K1 1620 aa31.27■■■□□ 2.6
ATG4B-201ENST00000344376 CECR2Q9BXF3 1484 aa31.14■■■□□ 2.58
ATG4B-201ENST00000344376 SMARCA4P51532 1647 aa30.59■■■□□ 2.49
ATG4B-201ENST00000344376 BAZ1AQ9NRL2 1556 aaPredicted RBP30.55■■■□□ 2.48
ATG4B-201ENST00000344376 NCAPD3P42695 1498 aa30.52■■■□□ 2.48
ATG4B-201ENST00000344376 ATAD2BQ9ULI0 1458 aa30.5■■■□□ 2.47
ATG4B-201ENST00000344376 SMARCA2P51531 1590 aa30.48■■■□□ 2.47
ATG4B-201ENST00000344376 HMGXB3Q12766 1538 aa30.36■■■□□ 2.45
ATG4B-201ENST00000344376 MROH2BQ7Z745 1585 aa30.3■■■□□ 2.44
ATG4B-201ENST00000344376 PEG3Q9GZU2 1588 aa30.29■■■□□ 2.44
ATG4B-201ENST00000344376 BAZ1BQ9UIG0 1483 aaKnown RBP30.26■■■□□ 2.44
ATG4B-201ENST00000344376 WIZO95785 1651 aa29.95■■■□□ 2.38
ATG4B-201ENST00000344376 ERCC6Q03468 1493 aa29.9■■■□□ 2.38
ATG4B-201ENST00000344376 RSF1Q96T23 1441 aaPredicted RBP29.88■■■□□ 2.37
ATG4B-201ENST00000344376 NESP48681 1621 aa29.83■■■□□ 2.37
ATG4B-201ENST00000344376 LAMC3Q9Y6N6 1575 aa29.77■■■□□ 2.36
ATG4B-201ENST00000344376 TOP2AP11388 1531 aaKnown RBP29.67■■■□□ 2.34
ATG4B-201ENST00000344376 CUX2O14529 1486 aa29.66■■■□□ 2.34
ATG4B-201ENST00000344376 CADPSQ9ULU8 1353 aa29.64■■■□□ 2.33
ATG4B-201ENST00000344376 PDS5BQ9NTI5 1447 aa29.61■■■□□ 2.33
ATG4B-201ENST00000344376 KIF21AQ7Z4S6 1674 aa29.46■■■□□ 2.31
ATG4B-201ENST00000344376 THOC2Q8NI27 1593 aaKnown RBP29.45■■■□□ 2.31
ATG4B-201ENST00000344376 CFTRP13569 1480 aa29.39■■■□□ 2.3
ATG4B-201ENST00000344376 MRC2Q9UBG0 1479 aa29.31■■■□□ 2.28
ATG4B-201ENST00000344376 CCDC88BA6NC98 1476 aa29.3■■■□□ 2.28
ATG4B-201ENST00000344376 CEP164Q9UPV0 1460 aa29.3■■■□□ 2.28
ATG4B-201ENST00000344376 FANCD2Q9BXW9 1451 aa29.29■■■□□ 2.28
ATG4B-201ENST00000344376 WDR62O43379 1518 aa29.2■■■□□ 2.26
ATG4B-201ENST00000344376 PRDM2Q13029 1718 aa29.1■■■□□ 2.25
ATG4B-201ENST00000344376 DNAJC5Q9H3Z4 198 aa29.01■■■□□ 2.23
ATG4B-201ENST00000344376 URB2Q14146 1524 aaKnown RBP28.98■■■□□ 2.23
ATG4B-201ENST00000344376 SUPT5HO00267 1087 aaKnown RBP28.96■■■□□ 2.23
ATG4B-201ENST00000344376 ABCC8Q09428 1581 aa28.81■■■□□ 2.2
ATG4B-201ENST00000344376 TOPBP1Q92547 1522 aa28.78■■■□□ 2.2
ATG4B-201ENST00000344376 DNMBPQ6XZF7 1577 aa28.74■■■□□ 2.19
ATG4B-201ENST00000344376 IFT140Q96RY7 1462 aa28.7■■■□□ 2.18
ATG4B-201ENST00000344376 ZNF608Q9ULD9 1512 aaPredicted RBP28.53■■■□□ 2.16
ATG4B-201ENST00000344376 POLA1P09884 1462 aaPredicted RBP28.52■■■□□ 2.16
ATG4B-201ENST00000344376 TARBP1Q13395 1621 aaKnown RBP28.46■■■□□ 2.15
ATG4B-201ENST00000344376 CUX1P39880 1505 aa28.45■■■□□ 2.15
ATG4B-201ENST00000344376 EIF4G3O43432 1585 aaKnown RBP28.43■■■□□ 2.14
ATG4B-201ENST00000344376 FGD5Q6ZNL6 1462 aa28.42■■■□□ 2.14
ATG4B-201ENST00000344376 SOGA1O94964 1423 aa28.41■■■□□ 2.14
ATG4B-201ENST00000344376 RAD54L2Q9Y4B4 1467 aa28.39■■■□□ 2.14
ATG4B-201ENST00000344376 OSCARQ8IYS5 282 aa28.38■■■□□ 2.13
ATG4B-201ENST00000344376 AQRO60306 1485 aaKnown RBP eCLIP28.36■■■□□ 2.133e-7■■■■□ 19.9
ATG4B-201ENST00000344376 WDR97A6NE52 1622 aa28.28■■■□□ 2.12
ATG4B-201ENST00000344376 TDRD9Q8NDG6 1382 aaKnown RBP28.27■■■□□ 2.12
ATG4B-201ENST00000344376 WRNQ14191 1432 aaPredicted RBP eCLIP28.22■■■□□ 2.11
ATG4B-201ENST00000344376 TOP2BQ02880 1626 aa28.16■■■□□ 2.1
ATG4B-201ENST00000344376 ABCA10Q8WWZ4 1543 aa28.14■■■□□ 2.1
ATG4B-201ENST00000344376 BIVM-ERCC5R4GMW8 1640 aa28.14■■■□□ 2.09
ATG4B-201ENST00000344376 GRIN2BQ13224 1484 aa28.13■■■□□ 2.09
ATG4B-201ENST00000344376 FBLN2P98095 1184 aa28.12■■■□□ 2.09
ATG4B-201ENST00000344376 SNAPC4Q5SXM2 1469 aa28.12■■■□□ 2.09
ATG4B-201ENST00000344376 SYNJ1O43426 1573 aa28.11■■■□□ 2.09
ATG4B-201ENST00000344376 CHD1O14646 1710 aa28.09■■■□□ 2.09
ATG4B-201ENST00000344376 GAPVD1Q14C86 1478 aa28.09■■■□□ 2.09
ATG4B-201ENST00000344376 MAGI1Q96QZ7 1491 aaPredicted RBP28.08■■■□□ 2.09
ATG4B-201ENST00000344376 ABCA5Q8WWZ7 1642 aa28.02■■■□□ 2.08
ATG4B-201ENST00000344376 CHMP7Q8WUX9 453 aaPredicted RBP28.01■■■□□ 2.07
ATG4B-201ENST00000344376 PBRM1Q86U86 1689 aa28■■■□□ 2.07
ATG4B-201ENST00000344376 TRIM41Q8WV44 630 aa27.99■■■□□ 2.07
ATG4B-201ENST00000344376 SYNJ2O15056 1496 aa27.97■■■□□ 2.07
ATG4B-201ENST00000344376 RIMBP3CA6NJZ7 1639 aa27.91■■■□□ 2.06
ATG4B-201ENST00000344376 RIMBP3BA6NNM3 1639 aa27.91■■■□□ 2.06
ATG4B-201ENST00000344376 RIMBP3Q9UFD9 1639 aa27.91■■■□□ 2.06
ATG4B-201ENST00000344376 ARHGEF11O15085 1522 aa27.9■■■□□ 2.06
ATG4B-201ENST00000344376 CLASP1Q7Z460 1538 aa27.81■■■□□ 2.04
ATG4B-201ENST00000344376 ERICH3Q5RHP9 1530 aa27.8■■■□□ 2.04
ATG4B-201ENST00000344376 ADAMTS12P58397 1594 aa27.8■■■□□ 2.04
ATG4B-201ENST00000344376 FHAD1B1AJZ9 1412 aa27.76■■■□□ 2.03
ATG4B-201ENST00000344376 GRIN2AQ12879 1464 aa27.75■■■□□ 2.03
ATG4B-201ENST00000344376 KIF27Q86VH2 1401 aa27.67■■■□□ 2.02
ATG4B-201ENST00000344376 CYB5RLQ6IPT4 315 aa27.66■■■□□ 2.02
ATG4B-201ENST00000344376 ARAP1Q96P48 1450 aa27.65■■■□□ 2.02
ATG4B-201ENST00000344376 NUP160Q12769 1436 aa27.63■■■□□ 2.01
ATG4B-201ENST00000344376 CEP170Q5SW79 1584 aa27.6■■■□□ 2.01
ATG4B-201ENST00000344376 IGF1RP08069 1367 aa27.53■■■□□ 2
ATG4B-201ENST00000344376 CUL7Q14999 1698 aa27.5■■□□□ 1.99
ATG4B-201ENST00000344376 SHROOM2Q13796 1616 aa27.43■■□□□ 1.98
ATG4B-201ENST00000344376 CARMIL1Q5VZK9 1371 aa27.39■■□□□ 1.98
ATG4B-201ENST00000344376 RUSC2Q8N2Y8 1516 aa27.38■■□□□ 1.97
ATG4B-201ENST00000344376 ERCC6L2Q5T890 1561 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms