RNA–Protein interactions for RNA: ENST00000496969.1

SF1-219, Transcript of splicing factor 1, humanhuman

TSL 3

Gene SF1, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-219ENST00000496969 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
SF1-219ENST00000496969 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
SF1-219ENST00000496969 ABCC9O60706 1549 aa18.23■□□□□ 0.51
SF1-219ENST00000496969 RB1CC1Q8TDY2 1594 aa17.53■□□□□ 0.4
SF1-219ENST00000496969 NACADO15069 1562 aa17.45■□□□□ 0.38
SF1-219ENST00000496969 DCAF8L2P0C7V8 631 aa17.32■□□□□ 0.36
SF1-219ENST00000496969 MYO15BQ96JP2 1530 aa17.26■□□□□ 0.35
SF1-219ENST00000496969 ZCCHC6Q5VYS8 1495 aaKnown RBP17.22■□□□□ 0.35
SF1-219ENST00000496969 DCAF1Q9Y4B6 1507 aa17.12■□□□□ 0.33
SF1-219ENST00000496969 UNC13AQ9UPW8 1703 aa17.12■□□□□ 0.33
SF1-219ENST00000496969 PABPN1Q86U42 306 aaKnown RBP eCLIP16.95■□□□□ 0.3
SF1-219ENST00000496969 BICRAQ9NZM4 1560 aa16.92■□□□□ 0.3
SF1-219ENST00000496969 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
SF1-219ENST00000496969 SHROOM4Q9ULL8 1493 aa16.81■□□□□ 0.28
SF1-219ENST00000496969 DNAJC5BQ9UF47 199 aa16.73■□□□□ 0.27
SF1-219ENST00000496969 EIF4G1Q04637 1599 aaKnown RBP16.54■□□□□ 0.24
SF1-219ENST00000496969 CC2D2AQ9P2K1 1620 aa16.51■□□□□ 0.23
SF1-219ENST00000496969 CECR2Q9BXF3 1484 aa16.41■□□□□ 0.22
SF1-219ENST00000496969 SMARCA4P51532 1647 aa16.13■□□□□ 0.17
SF1-219ENST00000496969 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
SF1-219ENST00000496969 SMARCA2P51531 1590 aa16.06■□□□□ 0.16
SF1-219ENST00000496969 NCAPD3P42695 1498 aa16.03■□□□□ 0.16
SF1-219ENST00000496969 ATAD2BQ9ULI0 1458 aa16.03■□□□□ 0.16
SF1-219ENST00000496969 HMGXB3Q12766 1538 aa16■□□□□ 0.15
SF1-219ENST00000496969 PEG3Q9GZU2 1588 aa15.95■□□□□ 0.14
SF1-219ENST00000496969 BAZ1BQ9UIG0 1483 aaKnown RBP15.94■□□□□ 0.14
SF1-219ENST00000496969 MROH2BQ7Z745 1585 aa15.92■□□□□ 0.14
SF1-219ENST00000496969 ERCC6Q03468 1493 aa15.78■□□□□ 0.12
SF1-219ENST00000496969 WIZO95785 1651 aa15.78■□□□□ 0.12
SF1-219ENST00000496969 LAMC3Q9Y6N6 1575 aa15.71■□□□□ 0.11
SF1-219ENST00000496969 NESP48681 1621 aa15.69■□□□□ 0.1
SF1-219ENST00000496969 CUX2O14529 1486 aa15.66■□□□□ 0.1
SF1-219ENST00000496969 RSF1Q96T23 1441 aaPredicted RBP15.66■□□□□ 0.1
SF1-219ENST00000496969 TOP2AP11388 1531 aaKnown RBP15.63■□□□□ 0.09
SF1-219ENST00000496969 KIF21AQ7Z4S6 1674 aa15.59■□□□□ 0.09
SF1-219ENST00000496969 PDS5BQ9NTI5 1447 aa15.59■□□□□ 0.09
SF1-219ENST00000496969 THOC2Q8NI27 1593 aaKnown RBP15.57■□□□□ 0.08
SF1-219ENST00000496969 CADPSQ9ULU8 1353 aa15.56■□□□□ 0.08
SF1-219ENST00000496969 PRDM2Q13029 1718 aa15.45■□□□□ 0.06
SF1-219ENST00000496969 MRC2Q9UBG0 1479 aa15.45■□□□□ 0.06
SF1-219ENST00000496969 CEP164Q9UPV0 1460 aa15.45■□□□□ 0.06
SF1-219ENST00000496969 CFTRP13569 1480 aa15.44■□□□□ 0.06
SF1-219ENST00000496969 FANCD2Q9BXW9 1451 aa15.42■□□□□ 0.06
SF1-219ENST00000496969 WDR62O43379 1518 aa15.41■□□□□ 0.06
SF1-219ENST00000496969 CCDC88BA6NC98 1476 aa15.38■□□□□ 0.05
SF1-219ENST00000496969 DNAJC5Q9H3Z4 198 aa15.25■□□□□ 0.03
SF1-219ENST00000496969 URB2Q14146 1524 aaKnown RBP15.25■□□□□ 0.03
SF1-219ENST00000496969 ABCC8Q09428 1581 aa15.18■□□□□ 0.02
SF1-219ENST00000496969 DNMBPQ6XZF7 1577 aa15.15■□□□□ 0.02
SF1-219ENST00000496969 TOPBP1Q92547 1522 aa15.15■□□□□ 0.02
SF1-219ENST00000496969 SUPT5HO00267 1087 aaKnown RBP15.14■□□□□ 0.01
SF1-219ENST00000496969 IFT140Q96RY7 1462 aa15.12■□□□□ 0.01
SF1-219ENST00000496969 EIF4G3O43432 1585 aaKnown RBP15.02■□□□□ -0
SF1-219ENST00000496969 ZNF608Q9ULD9 1512 aaPredicted RBP15.01□□□□□ -0.01
SF1-219ENST00000496969 TARBP1Q13395 1621 aaKnown RBP15□□□□□ -0.01
SF1-219ENST00000496969 POLA1P09884 1462 aaPredicted RBP15□□□□□ -0.01
SF1-219ENST00000496969 FGD5Q6ZNL6 1462 aa14.96□□□□□ -0.01
SF1-219ENST00000496969 CUX1P39880 1505 aa14.96□□□□□ -0.02
SF1-219ENST00000496969 WDR97A6NE52 1622 aa14.95□□□□□ -0.02
SF1-219ENST00000496969 SOGA1O94964 1423 aa14.92□□□□□ -0.02
SF1-219ENST00000496969 RAD54L2Q9Y4B4 1467 aa14.91□□□□□ -0.02
SF1-219ENST00000496969 OSCARQ8IYS5 282 aa14.9□□□□□ -0.02
SF1-219ENST00000496969 AQRO60306 1485 aaKnown RBP eCLIP14.89□□□□□ -0.032e-15■■■□□ 15.5
SF1-219ENST00000496969 CHD1O14646 1710 aa14.88□□□□□ -0.03
SF1-219ENST00000496969 BIVM-ERCC5R4GMW8 1640 aa14.85□□□□□ -0.03
SF1-219ENST00000496969 PBRM1Q86U86 1689 aa14.84□□□□□ -0.03
SF1-219ENST00000496969 TDRD9Q8NDG6 1382 aaKnown RBP14.83□□□□□ -0.04
SF1-219ENST00000496969 TOP2BQ02880 1626 aa14.82□□□□□ -0.04
SF1-219ENST00000496969 WRNQ14191 1432 aaPredicted RBP eCLIP14.82□□□□□ -0.04
SF1-219ENST00000496969 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
SF1-219ENST00000496969 GRIN2BQ13224 1484 aa14.81□□□□□ -0.04
SF1-219ENST00000496969 ABCA10Q8WWZ4 1543 aa14.8□□□□□ -0.04
SF1-219ENST00000496969 SYNJ1O43426 1573 aa14.8□□□□□ -0.04
SF1-219ENST00000496969 ABCA5Q8WWZ7 1642 aa14.79□□□□□ -0.04
SF1-219ENST00000496969 MAGI1Q96QZ7 1491 aaPredicted RBP14.79□□□□□ -0.04
SF1-219ENST00000496969 GAPVD1Q14C86 1478 aa14.77□□□□□ -0.04
SF1-219ENST00000496969 FBLN2P98095 1184 aa14.77□□□□□ -0.05
SF1-219ENST00000496969 RIMBP3CA6NJZ7 1639 aa14.76□□□□□ -0.05
SF1-219ENST00000496969 RIMBP3BA6NNM3 1639 aa14.76□□□□□ -0.05
SF1-219ENST00000496969 RIMBP3Q9UFD9 1639 aa14.76□□□□□ -0.05
SF1-219ENST00000496969 TRIM41Q8WV44 630 aa14.75□□□□□ -0.05
SF1-219ENST00000496969 SYNJ2O15056 1496 aa14.73□□□□□ -0.05
SF1-219ENST00000496969 ARHGEF11O15085 1522 aa14.71□□□□□ -0.05
SF1-219ENST00000496969 CHMP7Q8WUX9 453 aaPredicted RBP14.7□□□□□ -0.06
SF1-219ENST00000496969 ADAMTS12P58397 1594 aa14.68□□□□□ -0.06
SF1-219ENST00000496969 CLASP1Q7Z460 1538 aa14.66□□□□□ -0.06
SF1-219ENST00000496969 ERICH3Q5RHP9 1530 aa14.64□□□□□ -0.07
SF1-219ENST00000496969 GRIN2AQ12879 1464 aa14.62□□□□□ -0.07
SF1-219ENST00000496969 FHAD1B1AJZ9 1412 aa14.59□□□□□ -0.07
SF1-219ENST00000496969 ARAP1Q96P48 1450 aa14.57□□□□□ -0.08
SF1-219ENST00000496969 CEP170Q5SW79 1584 aa14.55□□□□□ -0.08
SF1-219ENST00000496969 KIF27Q86VH2 1401 aa14.54□□□□□ -0.08
SF1-219ENST00000496969 CUL7Q14999 1698 aa14.53□□□□□ -0.08
SF1-219ENST00000496969 NUP160Q12769 1436 aa14.53□□□□□ -0.08
SF1-219ENST00000496969 CYB5RLQ6IPT4 315 aa14.53□□□□□ -0.08
SF1-219ENST00000496969 SHROOM2Q13796 1616 aa14.48□□□□□ -0.09
SF1-219ENST00000496969 RUSC2Q8N2Y8 1516 aa14.46□□□□□ -0.09
SF1-219ENST00000496969 ERCC6L2Q5T890 1561 aa14.42□□□□□ -0.1
SF1-219ENST00000496969 IGF1RP08069 1367 aa14.4□□□□□ -0.1
SF1-219ENST00000496969 PRG4Q92954 1404 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms