Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.147e-15■■■■■ 27.4
XRN2Q9H0D6 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.327e-15■■■■■ 27.4
XRN2Q9H0D6 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.367e-15■■■■■ 27.4
XRN2Q9H0D6 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.377e-15■■■■■ 27.4
XRN2Q9H0D6 ZC3H11A-213ENST00000638800 7078 ntTSL 55.7□□□□□ -1.57e-15■■■■■ 27.4
XRN2Q9H0D6 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.577e-15■■■■■ 27.4
XRN2Q9H0D6 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.77e-15■■■■■ 27.4
XRN2Q9H0D6 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.617e-7■■■■■ 27.4
XRN2Q9H0D6 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.277e-7■■■■■ 27.4
XRN2Q9H0D6 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.177e-7■■■■■ 27.4
XRN2Q9H0D6 IPO4-219ENST00000561379 624 ntTSL 418.2■□□□□ 0.51e-12■■■■■ 27.4
XRN2Q9H0D6 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.174e-6■■■■■ 27.4
XRN2Q9H0D6 RIPOR1-203ENST00000422602 3990 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.624e-6■■■■■ 27.4
XRN2Q9H0D6 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.189e-7■■■■■ 27.4
XRN2Q9H0D6 ACTR1B-202ENST00000451664 1151 ntTSL 515.94■□□□□ 0.149e-7■■■■■ 27.4
XRN2Q9H0D6 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.51■■□□□ 1.513e-6■■■■■ 27.4
XRN2Q9H0D6 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.833e-6■■■■■ 27.4
XRN2Q9H0D6 KCNIP2-205ENST00000355657 2617 ntTSL 219.73■□□□□ 0.753e-6■■■■■ 27.4
XRN2Q9H0D6 AKAP1-216ENST00000575322 650 ntTSL 47.92□□□□□ -1.141e-6■■■■■ 27.4
XRN2Q9H0D6 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.27■■□□□ 1.642e-7■■■■■ 27.4
XRN2Q9H0D6 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.93■□□□□ 0.942e-7■■■■■ 27.4
XRN2Q9H0D6 SPPL2B-213ENST00000621568 1017 ntTSL 520.75■□□□□ 0.912e-7■■■■■ 27.4
XRN2Q9H0D6 TBKBP1-203ENST00000578982 733 ntTSL 322.97■■□□□ 1.274e-7■■■■■ 27.3
XRN2Q9H0D6 RBM17-203ENST00000432931 805 ntTSL 325.45■■□□□ 1.663e-6■■■■■ 27.3
XRN2Q9H0D6 RBM17-204ENST00000437845 833 ntTSL 322.13■■□□□ 1.133e-6■■■■■ 27.3
XRN2Q9H0D6 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.463e-6■■■■■ 27.3
XRN2Q9H0D6 SHANK2-221ENST00000618363 434 ntTSL 313.92□□□□□ -0.188e-8■■■■■ 27.3
XRN2Q9H0D6 CHD9-208ENST00000563410 488 ntTSL 225.48■■□□□ 1.671e-7■■■■■ 27.3
XRN2Q9H0D6 PCGF3-209ENST00000475288 604 ntTSL 321.93■■□□□ 1.16e-7■■■■■ 27.3
XRN2Q9H0D6 PPIF-205ENST00000498681 518 ntTSL 220.1■□□□□ 0.811e-8■■■■■ 27.3
XRN2Q9H0D6 PPIF-204ENST00000492149 646 ntTSL 219.99■□□□□ 0.791e-8■■■■■ 27.3
XRN2Q9H0D6 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.48■□□□□ 0.553e-7■■■■■ 27.3
XRN2Q9H0D6 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC15.52■□□□□ 0.083e-7■■■■■ 27.3
XRN2Q9H0D6 PHACTR1-210ENST00000489548 568 ntTSL 511.2□□□□□ -0.623e-7■■■■■ 27.3
XRN2Q9H0D6 PHACTR1-201ENST00000332995 5332 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.743e-7■■■■■ 27.3
XRN2Q9H0D6 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC13.13□□□□□ -0.313e-6■■■■■ 27.2
XRN2Q9H0D6 AOC2-201ENST00000253799 2657 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.333e-6■■■■■ 27.2
XRN2Q9H0D6 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.244e-6■■■■■ 27.2
XRN2Q9H0D6 PRKCZ-210ENST00000470596 788 ntTSL 224.95■■□□□ 1.585e-6■■■■■ 27.2
XRN2Q9H0D6 PRKCZ-205ENST00000461465 480 ntTSL 419.91■□□□□ 0.785e-6■■■■■ 27.2
XRN2Q9H0D6 PRKCZ-221ENST00000495347 698 ntTSL 419.17■□□□□ 0.665e-6■■■■■ 27.2
XRN2Q9H0D6 PRKCZ-222ENST00000496325 563 ntTSL 418.77■□□□□ 0.65e-6■■■■■ 27.2
XRN2Q9H0D6 PRKCZ-207ENST00000466651 425 ntTSL 513.81□□□□□ -0.25e-6■■■■■ 27.2
XRN2Q9H0D6 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.216e-7■■■■■ 27.2
XRN2Q9H0D6 SAMD4B-212ENST00000602243 672 ntTSL 330.7■■■□□ 2.519e-8■■■■■ 27.2
XRN2Q9H0D6 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.159e-8■■■■■ 27.2
XRN2Q9H0D6 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.129e-8■■■■■ 27.2
XRN2Q9H0D6 WDR55-205ENST00000520764 1696 ntTSL 215.64■□□□□ 0.092e-18■■■■■ 27.2
XRN2Q9H0D6 WDR55-202ENST00000504897 2953 ntTSL 214.55□□□□□ -0.082e-18■■■■■ 27.2
XRN2Q9H0D6 WDR55-203ENST00000506393 2477 ntTSL 212.78□□□□□ -0.362e-18■■■■■ 27.2
XRN2Q9H0D6 WDR55-201ENST00000358337 4080 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.72e-18■■■■■ 27.2
XRN2Q9H0D6 WDR55-204ENST00000511232 3812 ntTSL 210.64□□□□□ -0.712e-18■■■■■ 27.2
XRN2Q9H0D6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.858e-8■■■■■ 27.2
XRN2Q9H0D6 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.41■□□□□ 0.228e-8■■■■■ 27.2
XRN2Q9H0D6 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.472e-6■■■■■ 27.1
XRN2Q9H0D6 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.152e-6■■■■■ 27.1
XRN2Q9H0D6 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC11.67□□□□□ -0.542e-6■■■■■ 27.1
XRN2Q9H0D6 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.78e-8■■■■■ 27.1
XRN2Q9H0D6 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC34.5■■■■□ 3.112e-6■■■■■ 27
XRN2Q9H0D6 KIAA1522-205ENST00000468130 684 ntTSL 232.81■■■□□ 2.841e-8■■■■■ 27
XRN2Q9H0D6 COL27A1-208ENST00000494780 514 ntTSL 428.28■■■□□ 2.121e-8■■■■■ 27
XRN2Q9H0D6 MAP2K7-205ENST00000468058 1589 ntTSL 228.16■■■□□ 2.12e-8■■■■■ 27
XRN2Q9H0D6 FUS-212ENST00000569760 639 ntTSL 228.05■■■□□ 2.081e-8■■■■■ 27
XRN2Q9H0D6 FUS-203ENST00000474990 827 ntTSL 327.39■■□□□ 1.981e-8■■■■■ 27
XRN2Q9H0D6 KSR1-211ENST00000580163 479 ntTSL 326.83■■□□□ 1.891e-8■■■■■ 27
XRN2Q9H0D6 FUS-204ENST00000483853 778 ntTSL 225.74■■□□□ 1.711e-8■■■■■ 27
XRN2Q9H0D6 SLC6A9-210ENST00000528803 524 ntTSL 425.73■■□□□ 1.716e-6■■■■■ 27
XRN2Q9H0D6 ARFGEF1-206ENST00000519436 571 ntTSL 325.4■■□□□ 1.661e-8■■■■■ 27
XRN2Q9H0D6 SLC22A18-209ENST00000485423 635 ntTSL 224.73■■□□□ 1.551e-8■■■■■ 27
XRN2Q9H0D6 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.173e-8■■■■■ 27
XRN2Q9H0D6 NUP50-207ENST00000424634 579 ntTSL 322.13■■□□□ 1.131e-8■■■■■ 27
XRN2Q9H0D6 TIMM44-205ENST00000597926 819 ntTSL 321.52■■□□□ 1.041e-8■■■■■ 27
XRN2Q9H0D6 NUP50-208ENST00000430547 537 ntTSL 420.92■□□□□ 0.941e-8■■■■■ 27
XRN2Q9H0D6 RPS27-204ENST00000493224 573 ntTSL 220.76■□□□□ 0.911e-8■■■■■ 27
XRN2Q9H0D6 EXOC6B-203ENST00000410112 1372 ntTSL 520.34■□□□□ 0.851e-8■■■■■ 27
XRN2Q9H0D6 HNRNPL-211ENST00000601047 1127 ntTSL 520.18■□□□□ 0.821e-6■■■■■ 27
XRN2Q9H0D6 IL4R-217ENST00000566318 688 ntTSL 319.26■□□□□ 0.673e-7■■■■■ 27
XRN2Q9H0D6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.631e-8■■■■■ 27
XRN2Q9H0D6 NUP50-210ENST00000434760 763 ntTSL 418.92■□□□□ 0.621e-8■■■■■ 27
XRN2Q9H0D6 NUP50-213ENST00000461437 531 ntTSL 418.6■□□□□ 0.571e-8■■■■■ 27
XRN2Q9H0D6 NUP50-204ENST00000417702 584 ntTSL 418.18■□□□□ 0.51e-8■■■■■ 27
XRN2Q9H0D6 NUP50-219ENST00000497960 986 ntTSL 218.18■□□□□ 0.51e-8■■■■■ 27
XRN2Q9H0D6 HDGF-207ENST00000477306 686 ntTSL 217.8■□□□□ 0.441e-8■■■■■ 27
XRN2Q9H0D6 UBASH3B-202ENST00000525711 572 ntTSL 417.67■□□□□ 0.421e-8■■■■■ 27
XRN2Q9H0D6 TIMM44-204ENST00000595876 1206 ntTSL 1 (best)17.47■□□□□ 0.391e-8■■■■■ 27
XRN2Q9H0D6 NAPRT-205ENST00000460623 694 ntTSL 317.37■□□□□ 0.371e-8■■■■■ 27
XRN2Q9H0D6 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.93■□□□□ 0.31e-8■■■■■ 27
XRN2Q9H0D6 TIMM44-207ENST00000598675 744 ntTSL 316.7■□□□□ 0.261e-8■■■■■ 27
XRN2Q9H0D6 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.261e-8■■■■■ 27
XRN2Q9H0D6 TRAF4-214ENST00000580073 449 ntTSL 316.34■□□□□ 0.211e-9■■■■■ 27
XRN2Q9H0D6 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.27■□□□□ 0.192e-8■■■■■ 27
XRN2Q9H0D6 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.182e-8■■■■■ 27
XRN2Q9H0D6 HNRNPL-214ENST00000601813 593 ntTSL 516.13■□□□□ 0.171e-6■■■■■ 27
XRN2Q9H0D6 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.164e-6■■■■■ 27
XRN2Q9H0D6 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC15.87■□□□□ 0.131e-8■■■■■ 27
XRN2Q9H0D6 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.041e-8■■■■■ 27
XRN2Q9H0D6 AGPAT3-217ENST00000498670 791 ntTSL 315.27■□□□□ 0.041e-6■■■■■ 27
XRN2Q9H0D6 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.19■□□□□ 0.021e-8■■■■■ 27
XRN2Q9H0D6 RPS27-203ENST00000477151 467 ntTSL 214.95□□□□□ -0.021e-8■■■■■ 27
XRN2Q9H0D6 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.021e-8■■■■■ 27
Retrieved 100 of 21,068 protein–RNA pairs in 250.5 ms