RNA–Protein interactions for RNA: ENST00000424634.5

NUP50-207, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-207ENST00000424634 NISCHQ9Y2I1 1504 aa45.81■■■■■ 4.92
NUP50-207ENST00000424634 CCDC180Q9P1Z9 1646 aa40.89■■■■■ 4.14
NUP50-207ENST00000424634 ABCC9O60706 1549 aa40.6■■■■■ 4.09
NUP50-207ENST00000424634 RB1CC1Q8TDY2 1594 aa38.75■■■■□ 3.79
NUP50-207ENST00000424634 NACADO15069 1562 aa38.58■■■■□ 3.77
NUP50-207ENST00000424634 DCAF8L2P0C7V8 631 aa38.54■■■■□ 3.76
NUP50-207ENST00000424634 MYO15BQ96JP2 1530 aa38.17■■■■□ 3.7
NUP50-207ENST00000424634 ZCCHC6Q5VYS8 1495 aaKnown RBP38.02■■■■□ 3.68
NUP50-207ENST00000424634 UNC13AQ9UPW8 1703 aa37.95■■■■□ 3.67
NUP50-207ENST00000424634 PABPN1Q86U42 306 aaKnown RBP eCLIP37.91■■■■□ 3.66
NUP50-207ENST00000424634 DNAJC5BQ9UF47 199 aa37.87■■■■□ 3.65
NUP50-207ENST00000424634 DCAF1Q9Y4B6 1507 aa37.82■■■■□ 3.65
NUP50-207ENST00000424634 BICRAQ9NZM4 1560 aa37.69■■■■□ 3.62
NUP50-207ENST00000424634 SCRIBQ14160 1630 aa37.32■■■■□ 3.56
NUP50-207ENST00000424634 SHROOM4Q9ULL8 1493 aa37.09■■■■□ 3.53
NUP50-207ENST00000424634 CC2D2AQ9P2K1 1620 aa36.69■■■■□ 3.46
NUP50-207ENST00000424634 EIF4G1Q04637 1599 aaKnown RBP36.69■■■■□ 3.46
NUP50-207ENST00000424634 CECR2Q9BXF3 1484 aa36.51■■■■□ 3.44
NUP50-207ENST00000424634 NCAPD3P42695 1498 aa35.66■■■■□ 3.3
NUP50-207ENST00000424634 SMARCA4P51532 1647 aa35.64■■■■□ 3.3
NUP50-207ENST00000424634 ATAD2BQ9ULI0 1458 aa35.6■■■■□ 3.29
NUP50-207ENST00000424634 BAZ1AQ9NRL2 1556 aaPredicted RBP35.49■■■■□ 3.27
NUP50-207ENST00000424634 SMARCA2P51531 1590 aa35.47■■■■□ 3.27
NUP50-207ENST00000424634 HMGXB3Q12766 1538 aa35.37■■■■□ 3.25
NUP50-207ENST00000424634 MROH2BQ7Z745 1585 aa35.33■■■■□ 3.25
NUP50-207ENST00000424634 PEG3Q9GZU2 1588 aa35.29■■■■□ 3.24
NUP50-207ENST00000424634 BAZ1BQ9UIG0 1483 aaKnown RBP35.23■■■■□ 3.23
NUP50-207ENST00000424634 NESP48681 1621 aa35.01■■■■□ 3.19
NUP50-207ENST00000424634 ERCC6Q03468 1493 aa34.97■■■■□ 3.19
NUP50-207ENST00000424634 WIZO95785 1651 aa34.92■■■■□ 3.18
NUP50-207ENST00000424634 CUX2O14529 1486 aa34.78■■■■□ 3.16
NUP50-207ENST00000424634 LAMC3Q9Y6N6 1575 aa34.75■■■■□ 3.15
NUP50-207ENST00000424634 RSF1Q96T23 1441 aaPredicted RBP34.72■■■■□ 3.15
NUP50-207ENST00000424634 CADPSQ9ULU8 1353 aa34.59■■■■□ 3.13
NUP50-207ENST00000424634 PDS5BQ9NTI5 1447 aa34.55■■■■□ 3.12
NUP50-207ENST00000424634 KIF21AQ7Z4S6 1674 aa34.54■■■■□ 3.12
NUP50-207ENST00000424634 THOC2Q8NI27 1593 aaKnown RBP34.53■■■■□ 3.12
NUP50-207ENST00000424634 TOP2AP11388 1531 aaKnown RBP34.45■■■■□ 3.1
NUP50-207ENST00000424634 DNAJC5Q9H3Z4 198 aa34.44■■■■□ 3.1
NUP50-207ENST00000424634 CFTRP13569 1480 aa34.27■■■■□ 3.08
NUP50-207ENST00000424634 MRC2Q9UBG0 1479 aa34.22■■■■□ 3.07
NUP50-207ENST00000424634 FANCD2Q9BXW9 1451 aa34.18■■■■□ 3.06
NUP50-207ENST00000424634 CEP164Q9UPV0 1460 aa34.15■■■■□ 3.06
NUP50-207ENST00000424634 WDR62O43379 1518 aa34.14■■■■□ 3.06
NUP50-207ENST00000424634 CCDC88BA6NC98 1476 aa34.12■■■■□ 3.05
NUP50-207ENST00000424634 PRDM2Q13029 1718 aa33.92■■■■□ 3.02
NUP50-207ENST00000424634 URB2Q14146 1524 aaKnown RBP33.9■■■■□ 3.02
NUP50-207ENST00000424634 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
NUP50-207ENST00000424634 ABCC8Q09428 1581 aa33.49■■■□□ 2.95
NUP50-207ENST00000424634 SUPT5HO00267 1087 aaKnown RBP33.48■■■□□ 2.95
NUP50-207ENST00000424634 DNMBPQ6XZF7 1577 aa33.47■■■□□ 2.95
NUP50-207ENST00000424634 IFT140Q96RY7 1462 aa33.46■■■□□ 2.95
NUP50-207ENST00000424634 ZNF608Q9ULD9 1512 aaPredicted RBP33.43■■■□□ 2.94
NUP50-207ENST00000424634 OSCARQ8IYS5 282 aa33.32■■■□□ 2.92
NUP50-207ENST00000424634 TARBP1Q13395 1621 aaKnown RBP33.27■■■□□ 2.92
NUP50-207ENST00000424634 POLA1P09884 1462 aaPredicted RBP33.26■■■□□ 2.92
NUP50-207ENST00000424634 EIF4G3O43432 1585 aaKnown RBP33.21■■■□□ 2.91
NUP50-207ENST00000424634 AQRO60306 1485 aaKnown RBP eCLIP33.18■■■□□ 2.96e-6■□□□□ 8.5
NUP50-207ENST00000424634 RAD54L2Q9Y4B4 1467 aa33.17■■■□□ 2.9
NUP50-207ENST00000424634 CUX1P39880 1505 aa33.16■■■□□ 2.9
NUP50-207ENST00000424634 SOGA1O94964 1423 aa33.13■■■□□ 2.89
NUP50-207ENST00000424634 FGD5Q6ZNL6 1462 aa33.1■■■□□ 2.89
NUP50-207ENST00000424634 TRIM41Q8WV44 630 aa33.06■■■□□ 2.88
NUP50-207ENST00000424634 TDRD9Q8NDG6 1382 aaKnown RBP33.04■■■□□ 2.88
NUP50-207ENST00000424634 CHD1O14646 1710 aa32.93■■■□□ 2.86
NUP50-207ENST00000424634 WDR97A6NE52 1622 aa32.88■■■□□ 2.85
NUP50-207ENST00000424634 FBLN2P98095 1184 aa32.87■■■□□ 2.85
NUP50-207ENST00000424634 RIMBP3CA6NJZ7 1639 aa32.83■■■□□ 2.85
NUP50-207ENST00000424634 RIMBP3BA6NNM3 1639 aa32.83■■■□□ 2.85
NUP50-207ENST00000424634 RIMBP3Q9UFD9 1639 aa32.83■■■□□ 2.85
NUP50-207ENST00000424634 SNAPC4Q5SXM2 1469 aa32.81■■■□□ 2.84
NUP50-207ENST00000424634 GRIN2BQ13224 1484 aa32.77■■■□□ 2.84
NUP50-207ENST00000424634 ARHGEF11O15085 1522 aa32.75■■■□□ 2.83
NUP50-207ENST00000424634 ABCA10Q8WWZ4 1543 aa32.74■■■□□ 2.83
NUP50-207ENST00000424634 GAPVD1Q14C86 1478 aa32.72■■■□□ 2.83
NUP50-207ENST00000424634 MAGI1Q96QZ7 1491 aaPredicted RBP32.72■■■□□ 2.83
NUP50-207ENST00000424634 WRNQ14191 1432 aaPredicted RBP eCLIP32.71■■■□□ 2.83
NUP50-207ENST00000424634 TOP2BQ02880 1626 aa32.69■■■□□ 2.82
NUP50-207ENST00000424634 BIVM-ERCC5R4GMW8 1640 aa32.69■■■□□ 2.82
NUP50-207ENST00000424634 SYNJ1O43426 1573 aa32.69■■■□□ 2.82
NUP50-207ENST00000424634 CHMP7Q8WUX9 453 aaPredicted RBP32.68■■■□□ 2.82
NUP50-207ENST00000424634 PBRM1Q86U86 1689 aa32.67■■■□□ 2.82
NUP50-207ENST00000424634 ABCA5Q8WWZ7 1642 aa32.66■■■□□ 2.82
NUP50-207ENST00000424634 SYNJ2O15056 1496 aa32.61■■■□□ 2.81
NUP50-207ENST00000424634 CLASP1Q7Z460 1538 aa32.55■■■□□ 2.8
NUP50-207ENST00000424634 CYB5RLQ6IPT4 315 aa32.54■■■□□ 2.8
NUP50-207ENST00000424634 ARAP1Q96P48 1450 aa32.47■■■□□ 2.79
NUP50-207ENST00000424634 ADAMTS12P58397 1594 aa32.37■■■□□ 2.77
NUP50-207ENST00000424634 GRIN2AQ12879 1464 aa32.35■■■□□ 2.77
NUP50-207ENST00000424634 ERICH3Q5RHP9 1530 aa32.32■■■□□ 2.76
NUP50-207ENST00000424634 FHAD1B1AJZ9 1412 aa32.31■■■□□ 2.76
NUP50-207ENST00000424634 NUP160Q12769 1436 aa32.25■■■□□ 2.75
NUP50-207ENST00000424634 CEP170Q5SW79 1584 aa32.24■■■□□ 2.75
NUP50-207ENST00000424634 ERCC6L2Q5T890 1561 aa32.12■■■□□ 2.73
NUP50-207ENST00000424634 IGF1RP08069 1367 aa32.07■■■□□ 2.72
NUP50-207ENST00000424634 SHROOM2Q13796 1616 aa32.05■■■□□ 2.72
NUP50-207ENST00000424634 KIF27Q86VH2 1401 aa32.05■■■□□ 2.72
NUP50-207ENST00000424634 TRHP20396 242 aaPredicted RBP32.02■■■□□ 2.72
NUP50-207ENST00000424634 JPH4Q96JJ6 628 aa31.96■■■□□ 2.71
NUP50-207ENST00000424634 PRG4Q92954 1404 aaPredicted RBP31.91■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms