RNA–Protein interactions for RNA: ENST00000475288.5

PCGF3-209, Transcript of polycomb group ring finger 3, humanhuman

TSL 3

Gene PCGF3, Length 604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF3-209ENST00000475288 NISCHQ9Y2I1 1504 aa45.16■■■■■ 4.82
PCGF3-209ENST00000475288 CCDC180Q9P1Z9 1646 aa40.68■■■■■ 4.1
PCGF3-209ENST00000475288 ABCC9O60706 1549 aa40.64■■■■■ 4.1
PCGF3-209ENST00000475288 RB1CC1Q8TDY2 1594 aa38.74■■■■□ 3.79
PCGF3-209ENST00000475288 NACADO15069 1562 aa38.48■■■■□ 3.75
PCGF3-209ENST00000475288 DNAJC5BQ9UF47 199 aa38.25■■■■□ 3.71
PCGF3-209ENST00000475288 MYO15BQ96JP2 1530 aa37.98■■■■□ 3.67
PCGF3-209ENST00000475288 DCAF8L2P0C7V8 631 aa37.94■■■■□ 3.66
PCGF3-209ENST00000475288 UNC13AQ9UPW8 1703 aa37.83■■■■□ 3.65
PCGF3-209ENST00000475288 PABPN1Q86U42 306 aaKnown RBP eCLIP37.74■■■■□ 3.63
PCGF3-209ENST00000475288 BICRAQ9NZM4 1560 aa37.61■■■■□ 3.61
PCGF3-209ENST00000475288 ZCCHC6Q5VYS8 1495 aaKnown RBP37.41■■■■□ 3.58
PCGF3-209ENST00000475288 DCAF1Q9Y4B6 1507 aa37.41■■■■□ 3.58
PCGF3-209ENST00000475288 SHROOM4Q9ULL8 1493 aa37.24■■■■□ 3.55
PCGF3-209ENST00000475288 SCRIBQ14160 1630 aa36.89■■■■□ 3.5
PCGF3-209ENST00000475288 CC2D2AQ9P2K1 1620 aa36.78■■■■□ 3.48
PCGF3-209ENST00000475288 EIF4G1Q04637 1599 aaKnown RBP36.69■■■■□ 3.46
PCGF3-209ENST00000475288 CECR2Q9BXF3 1484 aa36.69■■■■□ 3.46
PCGF3-209ENST00000475288 NCAPD3P42695 1498 aa35.51■■■■□ 3.28
PCGF3-209ENST00000475288 ATAD2BQ9ULI0 1458 aa35.33■■■■□ 3.25
PCGF3-209ENST00000475288 DNAJC5Q9H3Z4 198 aa35.32■■■■□ 3.24
PCGF3-209ENST00000475288 SMARCA2P51531 1590 aa35.27■■■■□ 3.24
PCGF3-209ENST00000475288 SMARCA4P51532 1647 aa35.26■■■■□ 3.24
PCGF3-209ENST00000475288 HMGXB3Q12766 1538 aa35.26■■■■□ 3.23
PCGF3-209ENST00000475288 CUX2O14529 1486 aa35.24■■■■□ 3.23
PCGF3-209ENST00000475288 ERCC6Q03468 1493 aa35.13■■■■□ 3.21
PCGF3-209ENST00000475288 BAZ1AQ9NRL2 1556 aaPredicted RBP35.08■■■■□ 3.21
PCGF3-209ENST00000475288 PEG3Q9GZU2 1588 aa35■■■■□ 3.19
PCGF3-209ENST00000475288 BAZ1BQ9UIG0 1483 aaKnown RBP34.96■■■■□ 3.19
PCGF3-209ENST00000475288 NESP48681 1621 aa34.86■■■■□ 3.17
PCGF3-209ENST00000475288 MROH2BQ7Z745 1585 aa34.74■■■■□ 3.15
PCGF3-209ENST00000475288 LAMC3Q9Y6N6 1575 aa34.74■■■■□ 3.15
PCGF3-209ENST00000475288 THOC2Q8NI27 1593 aaKnown RBP34.66■■■■□ 3.14
PCGF3-209ENST00000475288 PDS5BQ9NTI5 1447 aa34.51■■■■□ 3.12
PCGF3-209ENST00000475288 KIF21AQ7Z4S6 1674 aa34.47■■■■□ 3.11
PCGF3-209ENST00000475288 CADPSQ9ULU8 1353 aa34.37■■■■□ 3.09
PCGF3-209ENST00000475288 WIZO95785 1651 aa34.3■■■■□ 3.08
PCGF3-209ENST00000475288 MRC2Q9UBG0 1479 aa34.2■■■■□ 3.07
PCGF3-209ENST00000475288 WDR62O43379 1518 aa34.17■■■■□ 3.06
PCGF3-209ENST00000475288 CEP164Q9UPV0 1460 aa34.03■■■■□ 3.04
PCGF3-209ENST00000475288 CFTRP13569 1480 aa33.98■■■■□ 3.03
PCGF3-209ENST00000475288 RSF1Q96T23 1441 aaPredicted RBP33.97■■■■□ 3.03
PCGF3-209ENST00000475288 FANCD2Q9BXW9 1451 aa33.96■■■■□ 3.03
PCGF3-209ENST00000475288 TOP2AP11388 1531 aaKnown RBP33.93■■■■□ 3.02
PCGF3-209ENST00000475288 URB2Q14146 1524 aaKnown RBP33.69■■■□□ 2.98
PCGF3-209ENST00000475288 PRDM2Q13029 1718 aa33.65■■■□□ 2.98
PCGF3-209ENST00000475288 TRIM41Q8WV44 630 aa33.55■■■□□ 2.96
PCGF3-209ENST00000475288 OSCARQ8IYS5 282 aa33.5■■■□□ 2.95
PCGF3-209ENST00000475288 CCDC88BA6NC98 1476 aa33.5■■■□□ 2.95
PCGF3-209ENST00000475288 IFT140Q96RY7 1462 aa33.38■■■□□ 2.93
PCGF3-209ENST00000475288 ABCC8Q09428 1581 aa33.31■■■□□ 2.92
PCGF3-209ENST00000475288 TOPBP1Q92547 1522 aa33.31■■■□□ 2.92
PCGF3-209ENST00000475288 ZNF608Q9ULD9 1512 aaPredicted RBP33.27■■■□□ 2.92
PCGF3-209ENST00000475288 DNMBPQ6XZF7 1577 aa33.21■■■□□ 2.91
PCGF3-209ENST00000475288 EIF4G3O43432 1585 aaKnown RBP33.13■■■□□ 2.89
PCGF3-209ENST00000475288 RIMBP3CA6NJZ7 1639 aa33.11■■■□□ 2.89
PCGF3-209ENST00000475288 RIMBP3BA6NNM3 1639 aa33.11■■■□□ 2.89
PCGF3-209ENST00000475288 RIMBP3Q9UFD9 1639 aa33.11■■■□□ 2.89
PCGF3-209ENST00000475288 TARBP1Q13395 1621 aaKnown RBP33.06■■■□□ 2.88
PCGF3-209ENST00000475288 ARHGEF11O15085 1522 aa33■■■□□ 2.87
PCGF3-209ENST00000475288 POLA1P09884 1462 aaPredicted RBP32.96■■■□□ 2.87
PCGF3-209ENST00000475288 AQRO60306 1485 aaKnown RBP eCLIP32.93■■■□□ 2.865e-28■■■■■ 58.4
PCGF3-209ENST00000475288 CHD1O14646 1710 aa32.88■■■□□ 2.85
PCGF3-209ENST00000475288 WDR97A6NE52 1622 aa32.82■■■□□ 2.84
PCGF3-209ENST00000475288 SOGA1O94964 1423 aa32.78■■■□□ 2.84
PCGF3-209ENST00000475288 RAD54L2Q9Y4B4 1467 aa32.77■■■□□ 2.84
PCGF3-209ENST00000475288 FGD5Q6ZNL6 1462 aa32.71■■■□□ 2.83
PCGF3-209ENST00000475288 TDRD9Q8NDG6 1382 aaKnown RBP32.69■■■□□ 2.82
PCGF3-209ENST00000475288 CUX1P39880 1505 aa32.67■■■□□ 2.82
PCGF3-209ENST00000475288 FBLN2P98095 1184 aa32.66■■■□□ 2.82
PCGF3-209ENST00000475288 CYB5RLQ6IPT4 315 aa32.66■■■□□ 2.82
PCGF3-209ENST00000475288 ARAP1Q96P48 1450 aa32.66■■■□□ 2.82
PCGF3-209ENST00000475288 SNAPC4Q5SXM2 1469 aa32.62■■■□□ 2.81
PCGF3-209ENST00000475288 MAGI1Q96QZ7 1491 aaPredicted RBP32.61■■■□□ 2.81
PCGF3-209ENST00000475288 CLASP1Q7Z460 1538 aa32.57■■■□□ 2.8
PCGF3-209ENST00000475288 GRIN2BQ13224 1484 aa32.55■■■□□ 2.8
PCGF3-209ENST00000475288 SYNJ1O43426 1573 aa32.52■■■□□ 2.8
PCGF3-209ENST00000475288 SYNJ2O15056 1496 aa32.48■■■□□ 2.79
PCGF3-209ENST00000475288 CHMP7Q8WUX9 453 aaPredicted RBP32.47■■■□□ 2.79
PCGF3-209ENST00000475288 PBRM1Q86U86 1689 aa32.4■■■□□ 2.78
PCGF3-209ENST00000475288 GAPVD1Q14C86 1478 aa32.4■■■□□ 2.78
PCGF3-209ENST00000475288 ABCA10Q8WWZ4 1543 aa32.4■■■□□ 2.78
PCGF3-209ENST00000475288 ABCA5Q8WWZ7 1642 aa32.36■■■□□ 2.77
PCGF3-209ENST00000475288 TRHP20396 242 aaPredicted RBP32.31■■■□□ 2.76
PCGF3-209ENST00000475288 WRNQ14191 1432 aaPredicted RBP eCLIP32.19■■■□□ 2.746e-6■■■■■ 35.2
PCGF3-209ENST00000475288 SUPT5HO00267 1087 aaKnown RBP32.17■■■□□ 2.74
PCGF3-209ENST00000475288 BIVM-ERCC5R4GMW8 1640 aa32.16■■■□□ 2.74
PCGF3-209ENST00000475288 TOP2BQ02880 1626 aa32.14■■■□□ 2.74
PCGF3-209ENST00000475288 GRIN2AQ12879 1464 aa32.13■■■□□ 2.73
PCGF3-209ENST00000475288 ADAMTS12P58397 1594 aa32.11■■■□□ 2.73
PCGF3-209ENST00000475288 NUP160Q12769 1436 aa32.07■■■□□ 2.72
PCGF3-209ENST00000475288 CEP170Q5SW79 1584 aa32.01■■■□□ 2.71
PCGF3-209ENST00000475288 FHAD1B1AJZ9 1412 aa32■■■□□ 2.71
PCGF3-209ENST00000475288 ERICH3Q5RHP9 1530 aa32■■■□□ 2.71
PCGF3-209ENST00000475288 SHROOM2Q13796 1616 aa31.97■■■□□ 2.71
PCGF3-209ENST00000475288 ERCC6L2Q5T890 1561 aa31.95■■■□□ 2.71
PCGF3-209ENST00000475288 PRG4Q92954 1404 aaPredicted RBP31.68■■■□□ 2.66
PCGF3-209ENST00000475288 RUSC2Q8N2Y8 1516 aa31.67■■■□□ 2.66
PCGF3-209ENST00000475288 JPH4Q96JJ6 628 aa31.65■■■□□ 2.66
PCGF3-209ENST00000475288 AEBP2Q6ZN18 517 aaPredicted RBP31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms