RNA–Protein interactions for RNA: ENST00000407019.6

NUP50-203, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 2,059 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-203ENST00000407019 NISCHQ9Y2I1 1504 aa35.76■■■■□ 3.31
NUP50-203ENST00000407019 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
NUP50-203ENST00000407019 ZCCHC6Q5VYS8 1495 aaKnown RBP30.23■■■□□ 2.43
NUP50-203ENST00000407019 SHROOM4Q9ULL8 1493 aa30.05■■■□□ 2.4
NUP50-203ENST00000407019 DCAF1Q9Y4B6 1507 aa29.47■■■□□ 2.31
NUP50-203ENST00000407019 DCAF8L2P0C7V8 631 aa29.43■■■□□ 2.3
NUP50-203ENST00000407019 SUPT5HO00267 1087 aaKnown RBP29.35■■■□□ 2.29
NUP50-203ENST00000407019 MYO15BQ96JP2 1530 aa28.74■■■□□ 2.19
NUP50-203ENST00000407019 CHIC1Q5VXU3 224 aa28.51■■■□□ 2.15
NUP50-203ENST00000407019 SCRIBQ14160 1630 aa28.5■■■□□ 2.15
NUP50-203ENST00000407019 ABCC9O60706 1549 aa28.49■■■□□ 2.15
NUP50-203ENST00000407019 NACADO15069 1562 aa28.35■■■□□ 2.13
NUP50-203ENST00000407019 RSF1Q96T23 1441 aaPredicted RBP28.14■■■□□ 2.1
NUP50-203ENST00000407019 RB1CC1Q8TDY2 1594 aa27.92■■■□□ 2.06
NUP50-203ENST00000407019 CECR2Q9BXF3 1484 aa27.8■■■□□ 2.04
NUP50-203ENST00000407019 MROH2BQ7Z745 1585 aa27.72■■■□□ 2.03
NUP50-203ENST00000407019 WIZO95785 1651 aa27.55■■■□□ 2
NUP50-203ENST00000407019 LOC105371045A0A1W2PR82 267 aa27.53■■■□□ 2
NUP50-203ENST00000407019 BAZ1AQ9NRL2 1556 aaPredicted RBP27.52■■■□□ 2
NUP50-203ENST00000407019 TRIM41Q8WV44 630 aa27.45■■□□□ 1.99
NUP50-203ENST00000407019 UNC13AQ9UPW8 1703 aa27.43■■□□□ 1.98
NUP50-203ENST00000407019 SMARCA4P51532 1647 aa27.3■■□□□ 1.96
NUP50-203ENST00000407019 PCGF6Q9BYE7 350 aa27.28■■□□□ 1.96
NUP50-203ENST00000407019 TOP2AP11388 1531 aaKnown RBP27.23■■□□□ 1.95
NUP50-203ENST00000407019 HRCP23327 699 aa27.21■■□□□ 1.95
NUP50-203ENST00000407019 EIF4G1Q04637 1599 aaKnown RBP27.18■■□□□ 1.94
NUP50-203ENST00000407019 BICRAQ9NZM4 1560 aa27.1■■□□□ 1.93
NUP50-203ENST00000407019 FAM9AQ8IZU1 332 aaPredicted RBP27.09■■□□□ 1.93
NUP50-203ENST00000407019 SMARCA2P51531 1590 aa27.03■■□□□ 1.92
NUP50-203ENST00000407019 CCDC88BA6NC98 1476 aa27.02■■□□□ 1.92
NUP50-203ENST00000407019 PABPN1Q86U42 306 aaKnown RBP eCLIP26.98■■□□□ 1.91
NUP50-203ENST00000407019 TRIM26Q12899 539 aaPredicted RBP26.95■■□□□ 1.9
NUP50-203ENST00000407019 PEG3Q9GZU2 1588 aa26.86■■□□□ 1.89
NUP50-203ENST00000407019 ABCC8Q09428 1581 aa26.81■■□□□ 1.88
NUP50-203ENST00000407019 EHMT2Q96KQ7 1210 aa26.76■■□□□ 1.87
NUP50-203ENST00000407019 ATAD2BQ9ULI0 1458 aa26.63■■□□□ 1.85
NUP50-203ENST00000407019 BAZ1BQ9UIG0 1483 aaKnown RBP26.55■■□□□ 1.84
NUP50-203ENST00000407019 PPARGC1BQ86YN6 1023 aaKnown RBP26.53■■□□□ 1.84
NUP50-203ENST00000407019 EEA1Q15075 1411 aa26.51■■□□□ 1.83
NUP50-203ENST00000407019 SOGA1O94964 1423 aa26.49■■□□□ 1.83
NUP50-203ENST00000407019 WRNQ14191 1432 aaPredicted RBP eCLIP26.47■■□□□ 1.83
NUP50-203ENST00000407019 RUSC2Q8N2Y8 1516 aa26.35■■□□□ 1.81
NUP50-203ENST00000407019 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
NUP50-203ENST00000407019 TNIKQ9UKE5 1360 aa26.34■■□□□ 1.81
NUP50-203ENST00000407019 SYNJ1O43426 1573 aa26.33■■□□□ 1.81
NUP50-203ENST00000407019 ZEB1P37275 1124 aaPredicted RBP26.32■■□□□ 1.8
NUP50-203ENST00000407019 CEP162Q5TB80 1403 aa26.32■■□□□ 1.8
NUP50-203ENST00000407019 GOLGA3Q08378 1498 aa26.25■■□□□ 1.79
NUP50-203ENST00000407019 HMGXB3Q12766 1538 aa26.22■■□□□ 1.79
NUP50-203ENST00000407019 NCAPD3P42695 1498 aa26.19■■□□□ 1.78
NUP50-203ENST00000407019 UBTFP17480 764 aaKnown RBP26.16■■□□□ 1.78
NUP50-203ENST00000407019 KIF21BO75037 1637 aa26.14■■□□□ 1.78
NUP50-203ENST00000407019 CEP164Q9UPV0 1460 aa26.14■■□□□ 1.77
NUP50-203ENST00000407019 TOP2BQ02880 1626 aa26.1■■□□□ 1.77
NUP50-203ENST00000407019 BIVM-ERCC5R4GMW8 1640 aa26.04■■□□□ 1.76
NUP50-203ENST00000407019 RAPGEF2Q9Y4G8 1499 aa25.9■■□□□ 1.74
NUP50-203ENST00000407019 CFTRP13569 1480 aa25.89■■□□□ 1.74
NUP50-203ENST00000407019 CLIP1P30622 1438 aa25.89■■□□□ 1.73
NUP50-203ENST00000407019 TTBK1Q5TCY1 1321 aaPredicted RBP25.87■■□□□ 1.73
NUP50-203ENST00000407019 CUX1P39880 1505 aa25.85■■□□□ 1.73
NUP50-203ENST00000407019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.81■■□□□ 1.72
NUP50-203ENST00000407019 CCER1Q8TC90 406 aaPredicted RBP25.79■■□□□ 1.72
NUP50-203ENST00000407019 VPS8Q8N3P4 1428 aa25.78■■□□□ 1.72
NUP50-203ENST00000407019 ERICH3Q5RHP9 1530 aa25.78■■□□□ 1.72
NUP50-203ENST00000407019 PRDM2Q13029 1718 aa25.76■■□□□ 1.71
NUP50-203ENST00000407019 PRXQ9BXM0 1461 aa25.75■■□□□ 1.71
NUP50-203ENST00000407019 KIF27Q86VH2 1401 aa25.69■■□□□ 1.7
NUP50-203ENST00000407019 CADPSQ9ULU8 1353 aa25.63■■□□□ 1.69
NUP50-203ENST00000407019 CC2D2AQ9P2K1 1620 aa25.61■■□□□ 1.69
NUP50-203ENST00000407019 APLP2Q06481 763 aa25.59■■□□□ 1.69
NUP50-203ENST00000407019 RANGAP1P46060 587 aaPredicted RBP25.57■■□□□ 1.68
NUP50-203ENST00000407019 ARAP1Q96P48 1450 aa25.52■■□□□ 1.68
NUP50-203ENST00000407019 CUX2O14529 1486 aa25.46■■□□□ 1.67
NUP50-203ENST00000407019 FGD5Q6ZNL6 1462 aa25.43■■□□□ 1.66
NUP50-203ENST00000407019 IGF1RP08069 1367 aa25.38■■□□□ 1.65
NUP50-203ENST00000407019 HNRNPUL2Q1KMD3 747 aaKnown RBP25.38■■□□□ 1.65
NUP50-203ENST00000407019 FANCD2Q9BXW9 1451 aa25.38■■□□□ 1.65
NUP50-203ENST00000407019 ARHGAP35Q9NRY4 1499 aa25.33■■□□□ 1.65
NUP50-203ENST00000407019 DNMBPQ6XZF7 1577 aa25.28■■□□□ 1.64
NUP50-203ENST00000407019 CARMIL1Q5VZK9 1371 aa25.28■■□□□ 1.64
NUP50-203ENST00000407019 KANK4Q5T7N3 995 aaPredicted RBP25.22■■□□□ 1.63
NUP50-203ENST00000407019 TOPBP1Q92547 1522 aa25.2■■□□□ 1.63
NUP50-203ENST00000407019 NESP48681 1621 aa25.19■■□□□ 1.62
NUP50-203ENST00000407019 ABCA10Q8WWZ4 1543 aa25.18■■□□□ 1.62
NUP50-203ENST00000407019 POLA1P09884 1462 aaPredicted RBP25.16■■□□□ 1.62
NUP50-203ENST00000407019 RRBP1Q9P2E9 1410 aaKnown RBP25.15■■□□□ 1.62
NUP50-203ENST00000407019 LAMC3Q9Y6N6 1575 aa25.14■■□□□ 1.62
NUP50-203ENST00000407019 RAD54L2Q9Y4B4 1467 aa25.14■■□□□ 1.61
NUP50-203ENST00000407019 DIEXFQ68CQ4 756 aaKnown RBP25.13■■□□□ 1.61
NUP50-203ENST00000407019 MAP3K1Q13233 1512 aa25.09■■□□□ 1.61
NUP50-203ENST00000407019 ZNF316A6NFI3 1004 aaPredicted RBP25.06■■□□□ 1.6
NUP50-203ENST00000407019 TIAM1Q13009 1591 aa25.06■■□□□ 1.6
NUP50-203ENST00000407019 CUL7Q14999 1698 aa25.05■■□□□ 1.6
NUP50-203ENST00000407019 CCNB3Q8WWL7 1395 aa25.02■■□□□ 1.6
NUP50-203ENST00000407019 URB2Q14146 1524 aaKnown RBP25.02■■□□□ 1.6
NUP50-203ENST00000407019 FHAD1B1AJZ9 1412 aa25.01■■□□□ 1.59
NUP50-203ENST00000407019 CLSPNQ9HAW4 1339 aa25■■□□□ 1.59
NUP50-203ENST00000407019 WDR97A6NE52 1622 aa24.99■■□□□ 1.59
NUP50-203ENST00000407019 DHX57Q6P158 1386 aaKnown RBP24.97■■□□□ 1.59
NUP50-203ENST00000407019 EFCAB5A4FU69 1503 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms