Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 RB1CC1-205ENST00000518468 507 ntTSL 33.68□□□□□ -1.821e-6■■■■□ 25
SF3B1O75533 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.782e-6■■■■□ 25
SF3B1O75533 SRSF2-204ENST00000452355 1357 ntTSL 517.43■□□□□ 0.382e-6■■■■□ 25
SF3B1O75533 SRSF2-208ENST00000585202 1359 ntTSL 315.58■□□□□ 0.082e-6■■■■□ 25
SF3B1O75533 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.042e-6■■■■□ 25
SF3B1O75533 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.93■□□□□ 0.463e-8■■■■□ 25
SF3B1O75533 GOLGA2-205ENST00000462089 766 ntTSL 312.59□□□□□ -0.393e-8■■■■□ 25
SF3B1O75533 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.862e-8■■■■□ 25
SF3B1O75533 ZNF692-212ENST00000478107 1051 ntTSL 522.53■■□□□ 1.29e-7■■■■□ 25
SF3B1O75533 XIST-206ENST00000434839 2865 ntTSL 5 BASIC8.4□□□□□ -1.077e-7■■■■□ 25
SF3B1O75533 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.92□□□□□ -1.627e-7■■■■□ 25
SF3B1O75533 SRRM2-225ENST00000576076 914 nt18.11■□□□□ 0.491e-6■■■■□ 25
SF3B1O75533 SRRM2-209ENST00000572278 711 ntTSL 210.18□□□□□ -0.781e-6■■■■□ 25
SF3B1O75533 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.181e-6■■■■□ 25
SF3B1O75533 PRRC2A-210ENST00000483470 916 ntTSL 28.9□□□□□ -0.984e-7■■■■□ 24.9
SF3B1O75533 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.122e-8■■■■□ 24.9
SF3B1O75533 SLC1A5-204ENST00000593713 774 ntTSL 312.17□□□□□ -0.462e-6■■■■□ 24.9
SF3B1O75533 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.548e-7■■■■□ 24.9
SF3B1O75533 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.68■□□□□ 0.18e-7■■■■□ 24.9
SF3B1O75533 SF1-211ENST00000448404 2778 ntTSL 1 (best)15.03■□□□□ -08e-7■■■■□ 24.9
SF3B1O75533 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.088e-7■■■■□ 24.9
SF3B1O75533 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.13□□□□□ -0.158e-7■■■■□ 24.9
SF3B1O75533 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.04□□□□□ -0.168e-7■■■■□ 24.9
SF3B1O75533 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.428e-7■■■■□ 24.9
SF3B1O75533 NUP214-227ENST00000531929 593 ntTSL 41.4□□□□□ -2.193e-7■■■■□ 24.9
SF3B1O75533 UBR4-216ENST00000494503 598 ntTSL 310.67□□□□□ -0.72e-6■■■■□ 24.9
SF3B1O75533 RPL10-209ENST00000451365 713 ntTSL 1 (best)11.4□□□□□ -0.582e-9■■■■□ 24.9
SF3B1O75533 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.11■■□□□ 1.771e-7■■■■□ 24.9
SF3B1O75533 LMAN2-207ENST00000514458 616 ntTSL 522.74■■□□□ 1.231e-7■■■■□ 24.9
SF3B1O75533 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.121e-7■■■■□ 24.9
SF3B1O75533 TMEM242-202ENST00000400788 4043 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.855e-6■■■■□ 24.8
SF3B1O75533 ZNF451-216ENST00000510483 719 ntTSL 421.09■□□□□ 0.972e-6■■■■□ 24.8
SF3B1O75533 ZNF451-206ENST00000370711 609 ntTSL 414.59□□□□□ -0.072e-6■■■■□ 24.8
SF3B1O75533 ZNF451-215ENST00000509251 513 ntTSL 43.69□□□□□ -1.822e-6■■■■□ 24.8
SF3B1O75533 ZNF451-218ENST00000515290 581 ntTSL 43.16□□□□□ -1.92e-6■■■■□ 24.8
SF3B1O75533 ZNF451-214ENST00000509071 477 ntTSL 52.5□□□□□ -2.012e-6■■■■□ 24.8
SF3B1O75533 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.334e-17■■■■□ 24.8
SF3B1O75533 COX7B-201ENST00000373335 497 ntTSL 22.55□□□□□ -24e-17■■■■□ 24.8
SF3B1O75533 SF1-214ENST00000477596 802 ntTSL 224.35■■□□□ 1.491e-8■■■■□ 24.8
SF3B1O75533 SF1-216ENST00000486867 875 ntTSL 314.32□□□□□ -0.121e-8■■■■□ 24.8
SF3B1O75533 RPS2-207ENST00000527826 837 ntTSL 1 (best)28.27■■■□□ 2.122e-6■■■■□ 24.8
SF3B1O75533 RPS2-206ENST00000527302 719 ntTSL 328.15■■■□□ 2.12e-6■■■■□ 24.8
SF3B1O75533 RPS2-217ENST00000563194 170 ntTSL 52.68□□□□□ -1.982e-6■■■■□ 24.8
SF3B1O75533 FDFT1-215ENST00000529464 932 ntTSL 1 (best)15.72■□□□□ 0.112e-6■■■■□ 24.8
SF3B1O75533 FDFT1-204ENST00000525283 898 ntTSL 314□□□□□ -0.172e-6■■■■□ 24.8
SF3B1O75533 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.092e-9■■■■□ 24.8
SF3B1O75533 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.92e-9■■■■□ 24.8
SF3B1O75533 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.732e-9■■■■□ 24.8
SF3B1O75533 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.642e-9■■■■□ 24.8
SF3B1O75533 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.622e-9■■■■□ 24.8
SF3B1O75533 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.622e-9■■■■□ 24.8
SF3B1O75533 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.12e-9■■■■□ 24.8
SF3B1O75533 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.12e-9■■■■□ 24.8
SF3B1O75533 DKC1-204ENST00000426673 843 ntTSL 510.58□□□□□ -0.721e-6■■■■□ 24.7
SF3B1O75533 DKC1-209ENST00000475966 902 ntTSL 510.57□□□□□ -0.721e-6■■■■□ 24.7
SF3B1O75533 DKC1-202ENST00000412124 670 ntTSL 57.89□□□□□ -1.151e-6■■■■□ 24.7
SF3B1O75533 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.05□□□□□ -1.66e-6■■■■□ 24.7
SF3B1O75533 SLC3A2-207ENST00000535768 597 ntTSL 510.47□□□□□ -0.737e-7■■■■□ 24.7
SF3B1O75533 MEIOB-204ENST00000460494 605 ntTSL 323.61■■□□□ 1.375e-6■■■■□ 24.7
SF3B1O75533 CIRBP-205ENST00000585913 833 ntTSL 323.77■■□□□ 1.46e-7■■■■□ 24.7
SF3B1O75533 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.42■■□□□ 1.346e-7■■■■□ 24.7
SF3B1O75533 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.52■■□□□ 1.26e-7■■■■□ 24.7
SF3B1O75533 CIRBP-210ENST00000586636 938 ntTSL 220.23■□□□□ 0.836e-7■■■■□ 24.7
SF3B1O75533 CIRBP-232ENST00000591376 830 ntTSL 320.23■□□□□ 0.836e-7■■■■□ 24.7
SF3B1O75533 CIRBP-237ENST00000592234 571 ntTSL 520.23■□□□□ 0.836e-7■■■■□ 24.7
SF3B1O75533 CIRBP-203ENST00000444172 584 ntTSL 319.31■□□□□ 0.686e-7■■■■□ 24.7
SF3B1O75533 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.07■□□□□ 0.646e-7■■■■□ 24.7
SF3B1O75533 CIRBP-206ENST00000585914 1052 ntTSL 518.68■□□□□ 0.586e-7■■■■□ 24.7
SF3B1O75533 CIRBP-212ENST00000587169 3028 ntTSL 217.28■□□□□ 0.366e-7■■■■□ 24.7
SF3B1O75533 CIRBP-228ENST00000590347 3117 ntTSL 215.74■□□□□ 0.116e-7■■■■□ 24.7
SF3B1O75533 CIRBP-242ENST00000593093 3528 ntTSL 214.61□□□□□ -0.076e-7■■■■□ 24.7
SF3B1O75533 MVD-212ENST00000565842 285 ntTSL 326.57■■□□□ 1.843e-6■■■■□ 24.7
SF3B1O75533 MVD-204ENST00000562741 217 ntTSL 223.51■■□□□ 1.353e-6■■■■□ 24.7
SF3B1O75533 NAP1L4-214ENST00000528261 644 ntTSL 24.21□□□□□ -1.748e-7■■■■□ 24.6
SF3B1O75533 KMT2E-211ENST00000480368 679 ntTSL 521.8■■□□□ 1.088e-8■■■■□ 24.6
SF3B1O75533 PSMD12-205ENST00000579365 560 ntTSL 421.93■■□□□ 1.14e-10■■■■□ 24.6
SF3B1O75533 PSMD12-206ENST00000581618 613 ntTSL 420.17■□□□□ 0.824e-10■■■■□ 24.6
SF3B1O75533 PSMD12-208ENST00000584289 1090 ntTSL 1 (best)19.86■□□□□ 0.774e-10■■■■□ 24.6
SF3B1O75533 PSMD12-207ENST00000584008 1752 ntTSL 1 (best)19.41■□□□□ 0.74e-10■■■■□ 24.6
SF3B1O75533 PSMD12-204ENST00000578015 448 ntTSL 218.49■□□□□ 0.554e-10■■■■□ 24.6
SF3B1O75533 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.59■□□□□ 0.414e-10■■■■□ 24.6
SF3B1O75533 SLC39A7-204ENST00000463972 1410 ntTSL 214.01□□□□□ -0.173e-9■■■■□ 24.6
SF3B1O75533 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.324e-10■■■■□ 24.6
SF3B1O75533 DDX5-224ENST00000583239 474 ntTSL 412.5□□□□□ -0.414e-10■■■■□ 24.6
SF3B1O75533 DDX5-206ENST00000578190 582 ntTSL 38.07□□□□□ -1.124e-10■■■■□ 24.6
SF3B1O75533 DDX5-211ENST00000579091 531 ntTSL 46.82□□□□□ -1.324e-10■■■■□ 24.6
SF3B1O75533 DDX5-225ENST00000583562 465 ntTSL 1 (best)6.47□□□□□ -1.374e-10■■■■□ 24.6
SF3B1O75533 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.33e-6■■■■□ 24.5
SF3B1O75533 BRD2-206ENST00000456339 887 ntTSL 416.61■□□□□ 0.253e-6■■■■□ 24.5
SF3B1O75533 HMGN2-205ENST00000466194 952 ntTSL 219.8■□□□□ 0.761e-13■■■■□ 24.5
SF3B1O75533 HMGN2-209ENST00000493418 1496 ntTSL 26.78□□□□□ -1.321e-13■■■■□ 24.5
SF3B1O75533 TRIM28-210ENST00000597618 609 ntTSL 211.31□□□□□ -0.64e-6■■■■□ 24.4
SF3B1O75533 DGCR8-207ENST00000491892 630 ntTSL 217.39■□□□□ 0.372e-6■■■■□ 24.4
SF3B1O75533 PTRH2-204ENST00000579915 531 ntTSL 45.34□□□□□ -1.552e-6■■■■□ 24.4
SF3B1O75533 KMT5A-205ENST00000461103 1000 ntTSL 223.67■■□□□ 1.383e-6■■■■□ 24.4
SF3B1O75533 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.583e-6■■■■□ 24.4
SF3B1O75533 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.43e-6■■■■□ 24.4
SF3B1O75533 KMT5A-204ENST00000437519 1774 ntTSL 213.39□□□□□ -0.273e-6■■■■□ 24.4
SF3B1O75533 ANKRD28-203ENST00000439830 592 ntTSL 527.8■■■□□ 2.044e-6■■■■□ 24.3
SF3B1O75533 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.87■■■□□ 2.859e-10■■■■□ 24.3
Retrieved 100 of 46,956 protein–RNA pairs in 2484.9 ms