RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 NISCHQ9Y2I1 1504 aa25.92■■□□□ 1.74
TRIM28-210ENST00000597618 ABCC9O60706 1549 aa23.74■■□□□ 1.39
TRIM28-210ENST00000597618 CCDC180Q9P1Z9 1646 aa23.41■■□□□ 1.34
TRIM28-210ENST00000597618 DNAJC5BQ9UF47 199 aa22.54■■□□□ 1.2
TRIM28-210ENST00000597618 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
TRIM28-210ENST00000597618 NACADO15069 1562 aa22.24■■□□□ 1.15
TRIM28-210ENST00000597618 PABPN1Q86U42 306 aaKnown RBP eCLIP22.03■■□□□ 1.12
TRIM28-210ENST00000597618 DCAF8L2P0C7V8 631 aa21.98■■□□□ 1.11
TRIM28-210ENST00000597618 UNC13AQ9UPW8 1703 aa21.86■■□□□ 1.09
TRIM28-210ENST00000597618 MYO15BQ96JP2 1530 aa21.84■■□□□ 1.09
TRIM28-210ENST00000597618 BICRAQ9NZM4 1560 aa21.79■■□□□ 1.08
TRIM28-210ENST00000597618 SHROOM4Q9ULL8 1493 aa21.57■■□□□ 1.04
TRIM28-210ENST00000597618 CECR2Q9BXF3 1484 aa21.45■■□□□ 1.02
TRIM28-210ENST00000597618 CC2D2AQ9P2K1 1620 aa21.43■■□□□ 1.02
TRIM28-210ENST00000597618 ZCCHC6Q5VYS8 1495 aaKnown RBP21.42■■□□□ 1.02
TRIM28-210ENST00000597618 DCAF1Q9Y4B6 1507 aa21.42■■□□□ 1.02
TRIM28-210ENST00000597618 EIF4G1Q04637 1599 aaKnown RBP21.31■■□□□ 1
TRIM28-210ENST00000597618 SCRIBQ14160 1630 aa21.29■■□□□ 1
TRIM28-210ENST00000597618 DNAJC5Q9H3Z4 198 aa21.01■□□□□ 0.95
TRIM28-210ENST00000597618 CUX2O14529 1486 aa20.66■□□□□ 0.9
TRIM28-210ENST00000597618 ERCC6Q03468 1493 aa20.56■□□□□ 0.88
TRIM28-210ENST00000597618 NCAPD3P42695 1498 aa20.53■□□□□ 0.88
TRIM28-210ENST00000597618 ATAD2BQ9ULI0 1458 aa20.41■□□□□ 0.86
TRIM28-210ENST00000597618 HMGXB3Q12766 1538 aa20.36■□□□□ 0.85
TRIM28-210ENST00000597618 SMARCA2P51531 1590 aa20.35■□□□□ 0.85
TRIM28-210ENST00000597618 SMARCA4P51532 1647 aa20.28■□□□□ 0.84
TRIM28-210ENST00000597618 NESP48681 1621 aa20.27■□□□□ 0.84
TRIM28-210ENST00000597618 BAZ1BQ9UIG0 1483 aaKnown RBP20.2■□□□□ 0.82
TRIM28-210ENST00000597618 THOC2Q8NI27 1593 aaKnown RBP20.17■□□□□ 0.82
TRIM28-210ENST00000597618 BAZ1AQ9NRL2 1556 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-210ENST00000597618 PEG3Q9GZU2 1588 aa20.12■□□□□ 0.81
TRIM28-210ENST00000597618 LAMC3Q9Y6N6 1575 aa20.12■□□□□ 0.81
TRIM28-210ENST00000597618 PDS5BQ9NTI5 1447 aa20.03■□□□□ 0.8
TRIM28-210ENST00000597618 KIF21AQ7Z4S6 1674 aa19.99■□□□□ 0.79
TRIM28-210ENST00000597618 MROH2BQ7Z745 1585 aa19.94■□□□□ 0.78
TRIM28-210ENST00000597618 TRIM41Q8WV44 630 aa19.92■□□□□ 0.78
TRIM28-210ENST00000597618 CADPSQ9ULU8 1353 aa19.88■□□□□ 0.77
TRIM28-210ENST00000597618 MRC2Q9UBG0 1479 aa19.87■□□□□ 0.77
TRIM28-210ENST00000597618 WDR62O43379 1518 aa19.84■□□□□ 0.77
TRIM28-210ENST00000597618 CEP164Q9UPV0 1460 aa19.73■□□□□ 0.75
TRIM28-210ENST00000597618 FANCD2Q9BXW9 1451 aa19.67■□□□□ 0.74
TRIM28-210ENST00000597618 WIZO95785 1651 aa19.65■□□□□ 0.74
TRIM28-210ENST00000597618 OSCARQ8IYS5 282 aa19.62■□□□□ 0.73
TRIM28-210ENST00000597618 CFTRP13569 1480 aa19.59■□□□□ 0.73
TRIM28-210ENST00000597618 URB2Q14146 1524 aaKnown RBP19.51■□□□□ 0.71
TRIM28-210ENST00000597618 TOP2AP11388 1531 aaKnown RBP19.45■□□□□ 0.7
TRIM28-210ENST00000597618 RSF1Q96T23 1441 aaPredicted RBP19.42■□□□□ 0.7
TRIM28-210ENST00000597618 RIMBP3CA6NJZ7 1639 aa19.39■□□□□ 0.69
TRIM28-210ENST00000597618 RIMBP3BA6NNM3 1639 aa19.39■□□□□ 0.69
TRIM28-210ENST00000597618 RIMBP3Q9UFD9 1639 aa19.39■□□□□ 0.69
TRIM28-210ENST00000597618 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
TRIM28-210ENST00000597618 ZNF608Q9ULD9 1512 aaPredicted RBP19.32■□□□□ 0.68
TRIM28-210ENST00000597618 ARHGEF11O15085 1522 aa19.31■□□□□ 0.68
TRIM28-210ENST00000597618 PRDM2Q13029 1718 aa19.31■□□□□ 0.68
TRIM28-210ENST00000597618 TOPBP1Q92547 1522 aa19.24■□□□□ 0.67
TRIM28-210ENST00000597618 EIF4G3O43432 1585 aaKnown RBP19.2■□□□□ 0.66
TRIM28-210ENST00000597618 ABCC8Q09428 1581 aa19.2■□□□□ 0.66
TRIM28-210ENST00000597618 CCDC88BA6NC98 1476 aa19.2■□□□□ 0.66
TRIM28-210ENST00000597618 CYB5RLQ6IPT4 315 aa19.17■□□□□ 0.66
TRIM28-210ENST00000597618 DNMBPQ6XZF7 1577 aa19.15■□□□□ 0.66
TRIM28-210ENST00000597618 AQRO60306 1485 aaKnown RBP eCLIP19.09■□□□□ 0.656e-12■■■■■ 63.4
TRIM28-210ENST00000597618 ARAP1Q96P48 1450 aa19.09■□□□□ 0.65
TRIM28-210ENST00000597618 CHD1O14646 1710 aa19.08■□□□□ 0.65
TRIM28-210ENST00000597618 TARBP1Q13395 1621 aaKnown RBP19.08■□□□□ 0.65
TRIM28-210ENST00000597618 TRHP20396 242 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-210ENST00000597618 FBLN2P98095 1184 aa19.04■□□□□ 0.64
TRIM28-210ENST00000597618 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-210ENST00000597618 RAD54L2Q9Y4B4 1467 aa18.93■□□□□ 0.62
TRIM28-210ENST00000597618 TDRD9Q8NDG6 1382 aaKnown RBP18.93■□□□□ 0.62
TRIM28-210ENST00000597618 SOGA1O94964 1423 aa18.92■□□□□ 0.62
TRIM28-210ENST00000597618 WDR97A6NE52 1622 aa18.92■□□□□ 0.62
TRIM28-210ENST00000597618 SNAPC4Q5SXM2 1469 aa18.91■□□□□ 0.62
TRIM28-210ENST00000597618 CLASP1Q7Z460 1538 aa18.9■□□□□ 0.62
TRIM28-210ENST00000597618 SYNJ1O43426 1573 aa18.88■□□□□ 0.61
TRIM28-210ENST00000597618 MAGI1Q96QZ7 1491 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-210ENST00000597618 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
TRIM28-210ENST00000597618 FGD5Q6ZNL6 1462 aa18.84■□□□□ 0.61
TRIM28-210ENST00000597618 GRIN2BQ13224 1484 aa18.83■□□□□ 0.6
TRIM28-210ENST00000597618 SYNJ2O15056 1496 aa18.81■□□□□ 0.6
TRIM28-210ENST00000597618 AEBP2Q6ZN18 517 aaPredicted RBP18.8■□□□□ 0.6
TRIM28-210ENST00000597618 CUX1P39880 1505 aa18.77■□□□□ 0.6
TRIM28-210ENST00000597618 GAPVD1Q14C86 1478 aa18.74■□□□□ 0.59
TRIM28-210ENST00000597618 PBRM1Q86U86 1689 aa18.67■□□□□ 0.58
TRIM28-210ENST00000597618 ABCA10Q8WWZ4 1543 aa18.64■□□□□ 0.57
TRIM28-210ENST00000597618 ABCA5Q8WWZ7 1642 aa18.62■□□□□ 0.57
TRIM28-210ENST00000597618 GRIN2AQ12879 1464 aa18.58■□□□□ 0.56
TRIM28-210ENST00000597618 ERCC6L2Q5T890 1561 aa18.55■□□□□ 0.56
TRIM28-210ENST00000597618 NUP160Q12769 1436 aa18.53■□□□□ 0.56
TRIM28-210ENST00000597618 CEP170Q5SW79 1584 aa18.52■□□□□ 0.56
TRIM28-210ENST00000597618 ADAMTS12P58397 1594 aa18.51■□□□□ 0.55
TRIM28-210ENST00000597618 WRNQ14191 1432 aaPredicted RBP eCLIP18.49■□□□□ 0.55
TRIM28-210ENST00000597618 SHROOM2Q13796 1616 aa18.47■□□□□ 0.55
TRIM28-210ENST00000597618 FHAD1B1AJZ9 1412 aa18.46■□□□□ 0.55
TRIM28-210ENST00000597618 ERICH3Q5RHP9 1530 aa18.39■□□□□ 0.54
TRIM28-210ENST00000597618 TOP2BQ02880 1626 aa18.38■□□□□ 0.53
TRIM28-210ENST00000597618 PRG4Q92954 1404 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-210ENST00000597618 BIVM-ERCC5R4GMW8 1640 aa18.37■□□□□ 0.53
TRIM28-210ENST00000597618 KIF13AQ9H1H9 1805 aa18.37■□□□□ 0.53
TRIM28-210ENST00000597618 JPH4Q96JJ6 628 aa18.31■□□□□ 0.52
TRIM28-210ENST00000597618 ABCC10Q5T3U5 1492 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms