RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 NISCHQ9Y2I1 1504 aa31.31■■■□□ 2.6
SF1-211ENST00000448404 SHROOM4Q9ULL8 1493 aa27.05■■□□□ 1.92
SF1-211ENST00000448404 DCAF8L2P0C7V8 631 aa26.67■■□□□ 1.86
SF1-211ENST00000448404 CCDC180Q9P1Z9 1646 aa26.48■■□□□ 1.83
SF1-211ENST00000448404 ZCCHC6Q5VYS8 1495 aaKnown RBP26.38■■□□□ 1.81
SF1-211ENST00000448404 SUPT5HO00267 1087 aaKnown RBP26.34■■□□□ 1.81
SF1-211ENST00000448404 DCAF1Q9Y4B6 1507 aa25.4■■□□□ 1.66
SF1-211ENST00000448404 ABCC9O60706 1549 aa25.37■■□□□ 1.65
SF1-211ENST00000448404 CHIC1Q5VXU3 224 aa25.24■■□□□ 1.63
SF1-211ENST00000448404 SCRIBQ14160 1630 aa25.22■■□□□ 1.63
SF1-211ENST00000448404 MYO15BQ96JP2 1530 aa25.13■■□□□ 1.61
SF1-211ENST00000448404 RSF1Q96T23 1441 aaPredicted RBP24.78■■□□□ 1.56
SF1-211ENST00000448404 LOC105371045A0A1W2PR82 267 aa24.73■■□□□ 1.55
SF1-211ENST00000448404 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.55
SF1-211ENST00000448404 NACADO15069 1562 aa24.65■■□□□ 1.54
SF1-211ENST00000448404 RB1CC1Q8TDY2 1594 aa24.53■■□□□ 1.52
SF1-211ENST00000448404 EHMT2Q96KQ7 1210 aa24.49■■□□□ 1.51
SF1-211ENST00000448404 MROH2BQ7Z745 1585 aa24.49■■□□□ 1.51
SF1-211ENST00000448404 FAM9AQ8IZU1 332 aaPredicted RBP24.45■■□□□ 1.5
SF1-211ENST00000448404 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.491e-6■□□□□ 9.3
SF1-211ENST00000448404 TRIM41Q8WV44 630 aa24.35■■□□□ 1.49
SF1-211ENST00000448404 WIZO95785 1651 aa24.32■■□□□ 1.48
SF1-211ENST00000448404 PCGF6Q9BYE7 350 aa24.32■■□□□ 1.48
SF1-211ENST00000448404 UNC13AQ9UPW8 1703 aa24.08■■□□□ 1.45
SF1-211ENST00000448404 BAZ1AQ9NRL2 1556 aaPredicted RBP24■■□□□ 1.43
SF1-211ENST00000448404 SMARCA4P51532 1647 aa23.89■■□□□ 1.41
SF1-211ENST00000448404 BICRAQ9NZM4 1560 aa23.86■■□□□ 1.41
SF1-211ENST00000448404 HRCP23327 699 aa23.86■■□□□ 1.41
SF1-211ENST00000448404 PPARGC1BQ86YN6 1023 aaKnown RBP23.83■■□□□ 1.4
SF1-211ENST00000448404 CCDC88BA6NC98 1476 aa23.82■■□□□ 1.4
SF1-211ENST00000448404 ABCC8Q09428 1581 aa23.79■■□□□ 1.4
SF1-211ENST00000448404 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
SF1-211ENST00000448404 SMARCA2P51531 1590 aa23.69■■□□□ 1.38
SF1-211ENST00000448404 EIF4G1Q04637 1599 aaKnown RBP23.66■■□□□ 1.38
SF1-211ENST00000448404 TRIM26Q12899 539 aaPredicted RBP23.63■■□□□ 1.37
SF1-211ENST00000448404 TTBK1Q5TCY1 1321 aaPredicted RBP23.56■■□□□ 1.36
SF1-211ENST00000448404 SOGA1O94964 1423 aa23.53■■□□□ 1.36
SF1-211ENST00000448404 RUSC2Q8N2Y8 1516 aa23.48■■□□□ 1.35
SF1-211ENST00000448404 ATAD2BQ9ULI0 1458 aa23.43■■□□□ 1.34
SF1-211ENST00000448404 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
SF1-211ENST00000448404 UBTFP17480 764 aaKnown RBP23.31■■□□□ 1.32
SF1-211ENST00000448404 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.32
SF1-211ENST00000448404 RANGAP1P46060 587 aaPredicted RBP23.27■■□□□ 1.32
SF1-211ENST00000448404 CSRNP3Q8WYN3 585 aa23.27■■□□□ 1.32
SF1-211ENST00000448404 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.31
SF1-211ENST00000448404 SYNJ1O43426 1573 aa23.19■■□□□ 1.3
SF1-211ENST00000448404 CEP162Q5TB80 1403 aa23.15■■□□□ 1.3
SF1-211ENST00000448404 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.08■■□□□ 1.29
SF1-211ENST00000448404 TNIKQ9UKE5 1360 aa23.01■■□□□ 1.27
SF1-211ENST00000448404 GOLGA3Q08378 1498 aa22.93■■□□□ 1.26
SF1-211ENST00000448404 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
SF1-211ENST00000448404 EEA1Q15075 1411 aa22.91■■□□□ 1.26
SF1-211ENST00000448404 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
SF1-211ENST00000448404 CCER1Q8TC90 406 aaPredicted RBP22.85■■□□□ 1.25
SF1-211ENST00000448404 CEP164Q9UPV0 1460 aa22.8■■□□□ 1.24
SF1-211ENST00000448404 HMGXB3Q12766 1538 aa22.79■■□□□ 1.24
SF1-211ENST00000448404 CLIP1P30622 1438 aa22.78■■□□□ 1.24
SF1-211ENST00000448404 CUX1P39880 1505 aa22.77■■□□□ 1.24
SF1-211ENST00000448404 TOP2BQ02880 1626 aa22.76■■□□□ 1.23
SF1-211ENST00000448404 ZEB1P37275 1124 aaPredicted RBP22.75■■□□□ 1.23
SF1-211ENST00000448404 HNRNPUL2Q1KMD3 747 aaKnown RBP22.72■■□□□ 1.23
SF1-211ENST00000448404 CFTRP13569 1480 aa22.7■■□□□ 1.22
SF1-211ENST00000448404 DNAJC5BQ9UF47 199 aa22.68■■□□□ 1.22
SF1-211ENST00000448404 KIF21BO75037 1637 aa22.67■■□□□ 1.22
SF1-211ENST00000448404 CC2D2AQ9P2K1 1620 aa22.64■■□□□ 1.21
SF1-211ENST00000448404 BIVM-ERCC5R4GMW8 1640 aa22.61■■□□□ 1.21
SF1-211ENST00000448404 CADPSQ9ULU8 1353 aa22.57■■□□□ 1.2
SF1-211ENST00000448404 APLP2Q06481 763 aa22.56■■□□□ 1.2
SF1-211ENST00000448404 VPS8Q8N3P4 1428 aa22.55■■□□□ 1.2
SF1-211ENST00000448404 NESP48681 1621 aa22.53■■□□□ 1.2
SF1-211ENST00000448404 PRXQ9BXM0 1461 aa22.53■■□□□ 1.2
SF1-211ENST00000448404 KIF27Q86VH2 1401 aa22.52■■□□□ 1.2
SF1-211ENST00000448404 KANK4Q5T7N3 995 aaPredicted RBP22.5■■□□□ 1.19
SF1-211ENST00000448404 CUX2O14529 1486 aa22.5■■□□□ 1.19
SF1-211ENST00000448404 FGD5Q6ZNL6 1462 aa22.43■■□□□ 1.18
SF1-211ENST00000448404 ARAP1Q96P48 1450 aa22.43■■□□□ 1.18
SF1-211ENST00000448404 P3H3Q8IVL6 736 aa22.43■■□□□ 1.18
SF1-211ENST00000448404 IGF1RP08069 1367 aa22.41■■□□□ 1.18
SF1-211ENST00000448404 FANCD2Q9BXW9 1451 aa22.38■■□□□ 1.17
SF1-211ENST00000448404 RAD54L2Q9Y4B4 1467 aa22.38■■□□□ 1.17
SF1-211ENST00000448404 ERICH3Q5RHP9 1530 aa22.34■■□□□ 1.17
SF1-211ENST00000448404 ITGAEP38570 1179 aa22.34■■□□□ 1.17
SF1-211ENST00000448404 PELP1Q8IZL8 1130 aaKnown RBP22.31■■□□□ 1.16
SF1-211ENST00000448404 ATP1B4Q9UN42 357 aaPredicted RBP22.31■■□□□ 1.16
SF1-211ENST00000448404 CARMIL1Q5VZK9 1371 aa22.3■■□□□ 1.16
SF1-211ENST00000448404 ARHGAP35Q9NRY4 1499 aa22.29■■□□□ 1.16
SF1-211ENST00000448404 PRDM2Q13029 1718 aa22.22■■□□□ 1.15
SF1-211ENST00000448404 POLA1P09884 1462 aaPredicted RBP22.19■■□□□ 1.14
SF1-211ENST00000448404 TDRD9Q8NDG6 1382 aaKnown RBP22.18■■□□□ 1.14
SF1-211ENST00000448404 TOPBP1Q92547 1522 aa22.18■■□□□ 1.14
SF1-211ENST00000448404 DIEXFQ68CQ4 756 aaKnown RBP22.16■■□□□ 1.14
SF1-211ENST00000448404 URB2Q14146 1524 aaKnown RBP22.11■■□□□ 1.13
SF1-211ENST00000448404 DNMBPQ6XZF7 1577 aa22.08■■□□□ 1.12
SF1-211ENST00000448404 FHOD3Q2V2M9 1422 aa22.08■■□□□ 1.12
SF1-211ENST00000448404 SCAF1Q9H7N4 1312 aaKnown RBP22.02■■□□□ 1.12
SF1-211ENST00000448404 ABCA10Q8WWZ4 1543 aa22.01■■□□□ 1.11
SF1-211ENST00000448404 ZNF316A6NFI3 1004 aaPredicted RBP22■■□□□ 1.11
SF1-211ENST00000448404 FAM50AQ14320 339 aaKnown RBP21.99■■□□□ 1.11
SF1-211ENST00000448404 CCNB3Q8WWL7 1395 aa21.98■■□□□ 1.11
SF1-211ENST00000448404 DHX57Q6P158 1386 aaKnown RBP21.95■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms