RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 NISCHQ9Y2I1 1504 aa24.04■■□□□ 1.44
UBR4-216ENST00000494503 ABCC9O60706 1549 aa21.79■■□□□ 1.08
UBR4-216ENST00000494503 CCDC180Q9P1Z9 1646 aa21.63■■□□□ 1.05
UBR4-216ENST00000494503 RB1CC1Q8TDY2 1594 aa20.66■□□□□ 0.9
UBR4-216ENST00000494503 DCAF8L2P0C7V8 631 aa20.53■□□□□ 0.88
UBR4-216ENST00000494503 NACADO15069 1562 aa20.45■□□□□ 0.86
UBR4-216ENST00000494503 DNAJC5BQ9UF47 199 aa20.39■□□□□ 0.85
UBR4-216ENST00000494503 PABPN1Q86U42 306 aaKnown RBP eCLIP20.28■□□□□ 0.84
UBR4-216ENST00000494503 UNC13AQ9UPW8 1703 aa20.22■□□□□ 0.83
UBR4-216ENST00000494503 MYO15BQ96JP2 1530 aa20.04■□□□□ 0.8
UBR4-216ENST00000494503 BICRAQ9NZM4 1560 aa19.99■□□□□ 0.79
UBR4-216ENST00000494503 ZCCHC6Q5VYS8 1495 aaKnown RBP19.91■□□□□ 0.78
UBR4-216ENST00000494503 SCRIBQ14160 1630 aa19.81■□□□□ 0.76
UBR4-216ENST00000494503 DCAF1Q9Y4B6 1507 aa19.78■□□□□ 0.76
UBR4-216ENST00000494503 SHROOM4Q9ULL8 1493 aa19.67■□□□□ 0.74
UBR4-216ENST00000494503 CC2D2AQ9P2K1 1620 aa19.65■□□□□ 0.74
UBR4-216ENST00000494503 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
UBR4-216ENST00000494503 EIF4G1Q04637 1599 aaKnown RBP19.56■□□□□ 0.72
UBR4-216ENST00000494503 ERCC6Q03468 1493 aa18.87■□□□□ 0.61
UBR4-216ENST00000494503 NCAPD3P42695 1498 aa18.83■□□□□ 0.6
UBR4-216ENST00000494503 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
UBR4-216ENST00000494503 ATAD2BQ9ULI0 1458 aa18.81■□□□□ 0.6
UBR4-216ENST00000494503 SMARCA2P51531 1590 aa18.79■□□□□ 0.6
UBR4-216ENST00000494503 DNAJC5Q9H3Z4 198 aa18.78■□□□□ 0.6
UBR4-216ENST00000494503 CUX2O14529 1486 aa18.73■□□□□ 0.59
UBR4-216ENST00000494503 HMGXB3Q12766 1538 aa18.73■□□□□ 0.59
UBR4-216ENST00000494503 BAZ1AQ9NRL2 1556 aaPredicted RBP18.7■□□□□ 0.58
UBR4-216ENST00000494503 BAZ1BQ9UIG0 1483 aaKnown RBP18.7■□□□□ 0.58
UBR4-216ENST00000494503 NESP48681 1621 aa18.67■□□□□ 0.58
UBR4-216ENST00000494503 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
UBR4-216ENST00000494503 PEG3Q9GZU2 1588 aa18.54■□□□□ 0.56
UBR4-216ENST00000494503 LAMC3Q9Y6N6 1575 aa18.49■□□□□ 0.55
UBR4-216ENST00000494503 KIF21AQ7Z4S6 1674 aa18.47■□□□□ 0.55
UBR4-216ENST00000494503 THOC2Q8NI27 1593 aaKnown RBP18.47■□□□□ 0.55
UBR4-216ENST00000494503 PDS5BQ9NTI5 1447 aa18.4■□□□□ 0.54
UBR4-216ENST00000494503 WIZO95785 1651 aa18.38■□□□□ 0.53
UBR4-216ENST00000494503 CADPSQ9ULU8 1353 aa18.3■□□□□ 0.52
UBR4-216ENST00000494503 MRC2Q9UBG0 1479 aa18.25■□□□□ 0.51
UBR4-216ENST00000494503 CEP164Q9UPV0 1460 aa18.2■□□□□ 0.5
UBR4-216ENST00000494503 WDR62O43379 1518 aa18.18■□□□□ 0.5
UBR4-216ENST00000494503 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.5
UBR4-216ENST00000494503 TRIM41Q8WV44 630 aa18.12■□□□□ 0.49
UBR4-216ENST00000494503 RSF1Q96T23 1441 aaPredicted RBP18.11■□□□□ 0.49
UBR4-216ENST00000494503 TOP2AP11388 1531 aaKnown RBP18.1■□□□□ 0.49
UBR4-216ENST00000494503 CFTRP13569 1480 aa18.06■□□□□ 0.48
UBR4-216ENST00000494503 PRDM2Q13029 1718 aa17.98■□□□□ 0.47
UBR4-216ENST00000494503 URB2Q14146 1524 aaKnown RBP17.97■□□□□ 0.47
UBR4-216ENST00000494503 OSCARQ8IYS5 282 aa17.9■□□□□ 0.46
UBR4-216ENST00000494503 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
UBR4-216ENST00000494503 IFT140Q96RY7 1462 aa17.79■□□□□ 0.44
UBR4-216ENST00000494503 ZNF608Q9ULD9 1512 aaPredicted RBP17.78■□□□□ 0.44
UBR4-216ENST00000494503 TOPBP1Q92547 1522 aa17.77■□□□□ 0.44
UBR4-216ENST00000494503 EIF4G3O43432 1585 aaKnown RBP17.72■□□□□ 0.43
UBR4-216ENST00000494503 ABCC8Q09428 1581 aa17.71■□□□□ 0.43
UBR4-216ENST00000494503 DNMBPQ6XZF7 1577 aa17.71■□□□□ 0.43
UBR4-216ENST00000494503 RIMBP3CA6NJZ7 1639 aa17.7■□□□□ 0.42
UBR4-216ENST00000494503 RIMBP3BA6NNM3 1639 aa17.7■□□□□ 0.42
UBR4-216ENST00000494503 RIMBP3Q9UFD9 1639 aa17.7■□□□□ 0.42
UBR4-216ENST00000494503 FBLN2P98095 1184 aa17.64■□□□□ 0.41
UBR4-216ENST00000494503 CHD1O14646 1710 aa17.64■□□□□ 0.41
UBR4-216ENST00000494503 AQRO60306 1485 aaKnown RBP eCLIP17.63■□□□□ 0.417e-7■■□□□ 14.5
UBR4-216ENST00000494503 ARHGEF11O15085 1522 aa17.62■□□□□ 0.41
UBR4-216ENST00000494503 TARBP1Q13395 1621 aaKnown RBP17.6■□□□□ 0.41
UBR4-216ENST00000494503 POLA1P09884 1462 aaPredicted RBP17.59■□□□□ 0.41
UBR4-216ENST00000494503 RAD54L2Q9Y4B4 1467 aa17.55■□□□□ 0.4
UBR4-216ENST00000494503 CYB5RLQ6IPT4 315 aa17.54■□□□□ 0.4
UBR4-216ENST00000494503 SOGA1O94964 1423 aa17.52■□□□□ 0.4
UBR4-216ENST00000494503 TDRD9Q8NDG6 1382 aaKnown RBP17.52■□□□□ 0.39
UBR4-216ENST00000494503 FGD5Q6ZNL6 1462 aa17.5■□□□□ 0.39
UBR4-216ENST00000494503 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
UBR4-216ENST00000494503 CUX1P39880 1505 aa17.44■□□□□ 0.38
UBR4-216ENST00000494503 TRHP20396 242 aaPredicted RBP17.44■□□□□ 0.38
UBR4-216ENST00000494503 CHMP7Q8WUX9 453 aaPredicted RBP17.43■□□□□ 0.38
UBR4-216ENST00000494503 SUPT5HO00267 1087 aaKnown RBP17.42■□□□□ 0.38
UBR4-216ENST00000494503 ARAP1Q96P48 1450 aa17.42■□□□□ 0.38
UBR4-216ENST00000494503 WDR97A6NE52 1622 aa17.4■□□□□ 0.38
UBR4-216ENST00000494503 SYNJ1O43426 1573 aa17.38■□□□□ 0.37
UBR4-216ENST00000494503 GRIN2BQ13224 1484 aa17.37■□□□□ 0.37
UBR4-216ENST00000494503 PBRM1Q86U86 1689 aa17.37■□□□□ 0.37
UBR4-216ENST00000494503 MAGI1Q96QZ7 1491 aaPredicted RBP17.37■□□□□ 0.37
UBR4-216ENST00000494503 CLASP1Q7Z460 1538 aa17.32■□□□□ 0.36
UBR4-216ENST00000494503 SYNJ2O15056 1496 aa17.32■□□□□ 0.36
UBR4-216ENST00000494503 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
UBR4-216ENST00000494503 ABCA5Q8WWZ7 1642 aa17.25■□□□□ 0.35
UBR4-216ENST00000494503 ABCA10Q8WWZ4 1543 aa17.23■□□□□ 0.35
UBR4-216ENST00000494503 WRNQ14191 1432 aaPredicted RBP eCLIP17.2■□□□□ 0.34
UBR4-216ENST00000494503 GRIN2AQ12879 1464 aa17.15■□□□□ 0.34
UBR4-216ENST00000494503 ADAMTS12P58397 1594 aa17.15■□□□□ 0.34
UBR4-216ENST00000494503 TOP2BQ02880 1626 aa17.14■□□□□ 0.33
UBR4-216ENST00000494503 BIVM-ERCC5R4GMW8 1640 aa17.14■□□□□ 0.33
UBR4-216ENST00000494503 CEP170Q5SW79 1584 aa17.1■□□□□ 0.33
UBR4-216ENST00000494503 ERCC6L2Q5T890 1561 aa17.1■□□□□ 0.33
UBR4-216ENST00000494503 FHAD1B1AJZ9 1412 aa17.06■□□□□ 0.32
UBR4-216ENST00000494503 NUP160Q12769 1436 aa17.04■□□□□ 0.32
UBR4-216ENST00000494503 ERICH3Q5RHP9 1530 aa17.03■□□□□ 0.32
UBR4-216ENST00000494503 AEBP2Q6ZN18 517 aaPredicted RBP17.01■□□□□ 0.31
UBR4-216ENST00000494503 SHROOM2Q13796 1616 aa16.99■□□□□ 0.31
UBR4-216ENST00000494503 PRG4Q92954 1404 aaPredicted RBP16.96■□□□□ 0.3
UBR4-216ENST00000494503 JPH4Q96JJ6 628 aa16.91■□□□□ 0.3
UBR4-216ENST00000494503 RUSC2Q8N2Y8 1516 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms