RNA–Protein interactions for RNA: ENST00000334944.9

SF1-202, Transcript of splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene SF1, Length 3,094 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-202ENST00000334944 NISCHQ9Y2I1 1504 aa28.8■■■□□ 2.2
SF1-202ENST00000334944 SHROOM4Q9ULL8 1493 aa24.85■■□□□ 1.57
SF1-202ENST00000334944 DCAF8L2P0C7V8 631 aa24.45■■□□□ 1.5
SF1-202ENST00000334944 CCDC180Q9P1Z9 1646 aa24.38■■□□□ 1.49
SF1-202ENST00000334944 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
SF1-202ENST00000334944 SUPT5HO00267 1087 aaKnown RBP24.27■■□□□ 1.48
SF1-202ENST00000334944 DCAF1Q9Y4B6 1507 aa23.42■■□□□ 1.34
SF1-202ENST00000334944 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
SF1-202ENST00000334944 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
SF1-202ENST00000334944 ABCC9O60706 1549 aa23.18■■□□□ 1.3
SF1-202ENST00000334944 SCRIBQ14160 1630 aa23.15■■□□□ 1.3
SF1-202ENST00000334944 HRCP23327 699 aa23.05■■□□□ 1.28
SF1-202ENST00000334944 PPARGC1BQ86YN6 1023 aaKnown RBP22.95■■□□□ 1.26
SF1-202ENST00000334944 RSF1Q96T23 1441 aaPredicted RBP22.8■■□□□ 1.24
SF1-202ENST00000334944 LOC105371045A0A1W2PR82 267 aa22.79■■□□□ 1.24
SF1-202ENST00000334944 PCGF6Q9BYE7 350 aa22.68■■□□□ 1.22
SF1-202ENST00000334944 NACADO15069 1562 aa22.67■■□□□ 1.22
SF1-202ENST00000334944 CECR2Q9BXF3 1484 aa22.65■■□□□ 1.22
SF1-202ENST00000334944 RB1CC1Q8TDY2 1594 aa22.57■■□□□ 1.2
SF1-202ENST00000334944 FAM9AQ8IZU1 332 aaPredicted RBP22.51■■□□□ 1.19
SF1-202ENST00000334944 EHMT2Q96KQ7 1210 aa22.5■■□□□ 1.19
SF1-202ENST00000334944 MROH2BQ7Z745 1585 aa22.49■■□□□ 1.19
SF1-202ENST00000334944 TRIM41Q8WV44 630 aa22.48■■□□□ 1.19
SF1-202ENST00000334944 PELP1Q8IZL8 1130 aaKnown RBP22.48■■□□□ 1.19
SF1-202ENST00000334944 WIZO95785 1651 aa22.35■■□□□ 1.17
SF1-202ENST00000334944 PABPN1Q86U42 306 aaKnown RBP eCLIP22.27■■□□□ 1.151e-6■□□□□ 9.3
SF1-202ENST00000334944 SCAF1Q9H7N4 1312 aaKnown RBP22.16■■□□□ 1.14
SF1-202ENST00000334944 BAZ1AQ9NRL2 1556 aaPredicted RBP22.1■■□□□ 1.13
SF1-202ENST00000334944 UNC13AQ9UPW8 1703 aa22.08■■□□□ 1.12
SF1-202ENST00000334944 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
SF1-202ENST00000334944 TRIM26Q12899 539 aaPredicted RBP21.95■■□□□ 1.1
SF1-202ENST00000334944 CCDC88BA6NC98 1476 aa21.9■■□□□ 1.1
SF1-202ENST00000334944 ABCC8Q09428 1581 aa21.87■■□□□ 1.09
SF1-202ENST00000334944 TOP2AP11388 1531 aaKnown RBP21.86■■□□□ 1.09
SF1-202ENST00000334944 BICRAQ9NZM4 1560 aa21.84■■□□□ 1.09
SF1-202ENST00000334944 SMARCA2P51531 1590 aa21.79■■□□□ 1.08
SF1-202ENST00000334944 EIF4G1Q04637 1599 aaKnown RBP21.78■■□□□ 1.08
SF1-202ENST00000334944 TTBK1Q5TCY1 1321 aaPredicted RBP21.68■■□□□ 1.06
SF1-202ENST00000334944 SOGA1O94964 1423 aa21.64■■□□□ 1.05
SF1-202ENST00000334944 RUSC2Q8N2Y8 1516 aa21.57■■□□□ 1.04
SF1-202ENST00000334944 MYT1Q01538 1121 aa21.57■■□□□ 1.04
SF1-202ENST00000334944 UBTFP17480 764 aaKnown RBP21.51■■□□□ 1.03
SF1-202ENST00000334944 ATAD2BQ9ULI0 1458 aa21.5■■□□□ 1.03
SF1-202ENST00000334944 BAZ1BQ9UIG0 1483 aaKnown RBP21.46■■□□□ 1.03
SF1-202ENST00000334944 CSRNP3Q8WYN3 585 aa21.46■■□□□ 1.03
SF1-202ENST00000334944 NEUROD1Q13562 356 aa21.45■■□□□ 1.02
SF1-202ENST00000334944 WRNQ14191 1432 aaPredicted RBP eCLIP21.44■■□□□ 1.02
SF1-202ENST00000334944 PEG3Q9GZU2 1588 aa21.41■■□□□ 1.02
SF1-202ENST00000334944 ACIN1Q9UKV3 1341 aaKnown RBP21.38■■□□□ 1.01
SF1-202ENST00000334944 GTF3C3Q9Y5Q9 886 aa21.38■■□□□ 1.01
SF1-202ENST00000334944 CEP162Q5TB80 1403 aa21.38■■□□□ 1.01
SF1-202ENST00000334944 RANGAP1P46060 587 aaPredicted RBP21.37■■□□□ 1.01
SF1-202ENST00000334944 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
SF1-202ENST00000334944 SYNJ1O43426 1573 aa21.32■■□□□ 1
SF1-202ENST00000334944 ZEB1P37275 1124 aaPredicted RBP21.32■■□□□ 1
SF1-202ENST00000334944 TNIKQ9UKE5 1360 aa21.27■□□□□ 0.99
SF1-202ENST00000334944 EEA1Q15075 1411 aa21.21■□□□□ 0.99
SF1-202ENST00000334944 CCER1Q8TC90 406 aaPredicted RBP21.19■□□□□ 0.98
SF1-202ENST00000334944 GOLGA3Q08378 1498 aa21.19■□□□□ 0.98
SF1-202ENST00000334944 RAPGEF2Q9Y4G8 1499 aa21.08■□□□□ 0.96
SF1-202ENST00000334944 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
SF1-202ENST00000334944 NCAPD3P42695 1498 aa21.04■□□□□ 0.96
SF1-202ENST00000334944 CLIP1P30622 1438 aa21.03■□□□□ 0.96
SF1-202ENST00000334944 CENPBP07199 599 aaPredicted RBP21■□□□□ 0.95
SF1-202ENST00000334944 HNRNPUL2Q1KMD3 747 aaKnown RBP20.98■□□□□ 0.95
SF1-202ENST00000334944 TOP2BQ02880 1626 aa20.97■□□□□ 0.95
SF1-202ENST00000334944 KIF21BO75037 1637 aa20.95■□□□□ 0.94
SF1-202ENST00000334944 HMGXB3Q12766 1538 aa20.95■□□□□ 0.94
SF1-202ENST00000334944 CUX1P39880 1505 aa20.91■□□□□ 0.94
SF1-202ENST00000334944 YTHDC1Q96MU7 727 aaKnown RBP20.9■□□□□ 0.94
SF1-202ENST00000334944 APLP2Q06481 763 aa20.9■□□□□ 0.94
SF1-202ENST00000334944 DIEXFQ68CQ4 756 aaKnown RBP20.89■□□□□ 0.94
SF1-202ENST00000334944 CFTRP13569 1480 aa20.85■□□□□ 0.93
SF1-202ENST00000334944 BIVM-ERCC5R4GMW8 1640 aa20.84■□□□□ 0.93
SF1-202ENST00000334944 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.93
SF1-202ENST00000334944 KIF27Q86VH2 1401 aa20.76■□□□□ 0.91
SF1-202ENST00000334944 PRXQ9BXM0 1461 aa20.76■□□□□ 0.91
SF1-202ENST00000334944 CADPSQ9ULU8 1353 aa20.72■□□□□ 0.91
SF1-202ENST00000334944 KANK4Q5T7N3 995 aaPredicted RBP20.72■□□□□ 0.91
SF1-202ENST00000334944 CC2D2AQ9P2K1 1620 aa20.71■□□□□ 0.91
SF1-202ENST00000334944 CUX2O14529 1486 aa20.69■□□□□ 0.9
SF1-202ENST00000334944 ARAP1Q96P48 1450 aa20.66■□□□□ 0.9
SF1-202ENST00000334944 ERICH3Q5RHP9 1530 aa20.64■□□□□ 0.89
SF1-202ENST00000334944 BCL11AQ9H165 835 aa20.63■□□□□ 0.89
SF1-202ENST00000334944 FGD5Q6ZNL6 1462 aa20.61■□□□□ 0.89
SF1-202ENST00000334944 IGF1RP08069 1367 aa20.6■□□□□ 0.89
SF1-202ENST00000334944 DNAJC5BQ9UF47 199 aa20.59■□□□□ 0.89
SF1-202ENST00000334944 NESP48681 1621 aa20.59■□□□□ 0.89
SF1-202ENST00000334944 P3H3Q8IVL6 736 aa20.59■□□□□ 0.89
SF1-202ENST00000334944 ITGAEP38570 1179 aa20.58■□□□□ 0.88
SF1-202ENST00000334944 FANCD2Q9BXW9 1451 aa20.54■□□□□ 0.88
SF1-202ENST00000334944 ARHGAP35Q9NRY4 1499 aa20.53■□□□□ 0.88
SF1-202ENST00000334944 CARMIL1Q5VZK9 1371 aa20.53■□□□□ 0.88
SF1-202ENST00000334944 ATP1B4Q9UN42 357 aaPredicted RBP20.52■□□□□ 0.88
SF1-202ENST00000334944 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.87
SF1-202ENST00000334944 PRDM2Q13029 1718 aa20.48■□□□□ 0.87
SF1-202ENST00000334944 ZNF316A6NFI3 1004 aaPredicted RBP20.44■□□□□ 0.86
SF1-202ENST00000334944 MIER1Q8N108 512 aa20.4■□□□□ 0.86
SF1-202ENST00000334944 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
SF1-202ENST00000334944 TOPBP1Q92547 1522 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms