RNA–Protein interactions for RNA: ENST00000377394.7

SF1-205, Transcript of splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene SF1, Length 2,854 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-205ENST00000377394 NISCHQ9Y2I1 1504 aa28.47■■■□□ 2.15
SF1-205ENST00000377394 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
SF1-205ENST00000377394 CCDC180Q9P1Z9 1646 aa24.18■■□□□ 1.46
SF1-205ENST00000377394 ZCCHC6Q5VYS8 1495 aaKnown RBP24.11■■□□□ 1.45
SF1-205ENST00000377394 SUPT5HO00267 1087 aaKnown RBP23.78■■□□□ 1.4
SF1-205ENST00000377394 DCAF8L2P0C7V8 631 aa23.43■■□□□ 1.34
SF1-205ENST00000377394 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
SF1-205ENST00000377394 CHIC1Q5VXU3 224 aa23.24■■□□□ 1.31
SF1-205ENST00000377394 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
SF1-205ENST00000377394 HRCP23327 699 aa23.12■■□□□ 1.29
SF1-205ENST00000377394 PPARGC1BQ86YN6 1023 aaKnown RBP22.8■■□□□ 1.24
SF1-205ENST00000377394 ABCC9O60706 1549 aa22.76■■□□□ 1.23
SF1-205ENST00000377394 PCGF6Q9BYE7 350 aa22.65■■□□□ 1.22
SF1-205ENST00000377394 SCRIBQ14160 1630 aa22.62■■□□□ 1.21
SF1-205ENST00000377394 RSF1Q96T23 1441 aaPredicted RBP22.56■■□□□ 1.2
SF1-205ENST00000377394 LOC105371045A0A1W2PR82 267 aa22.52■■□□□ 1.19
SF1-205ENST00000377394 PELP1Q8IZL8 1130 aaKnown RBP22.37■■□□□ 1.17
SF1-205ENST00000377394 NACADO15069 1562 aa22.33■■□□□ 1.17
SF1-205ENST00000377394 RB1CC1Q8TDY2 1594 aa22.32■■□□□ 1.16
SF1-205ENST00000377394 CECR2Q9BXF3 1484 aa22.19■■□□□ 1.14
SF1-205ENST00000377394 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
SF1-205ENST00000377394 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
SF1-205ENST00000377394 MROH2BQ7Z745 1585 aa22.13■■□□□ 1.13
SF1-205ENST00000377394 SCAF1Q9H7N4 1312 aaKnown RBP22.04■■□□□ 1.12
SF1-205ENST00000377394 WIZO95785 1651 aa22■■□□□ 1.11
SF1-205ENST00000377394 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.1
SF1-205ENST00000377394 BAZ1AQ9NRL2 1556 aaPredicted RBP21.89■■□□□ 1.1
SF1-205ENST00000377394 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
SF1-205ENST00000377394 EHMT2Q96KQ7 1210 aa21.72■■□□□ 1.07
SF1-205ENST00000377394 TOP2AP11388 1531 aaKnown RBP21.68■■□□□ 1.06
SF1-205ENST00000377394 ZEB1P37275 1124 aaPredicted RBP21.68■■□□□ 1.06
SF1-205ENST00000377394 SMARCA4P51532 1647 aa21.66■■□□□ 1.06
SF1-205ENST00000377394 UNC13AQ9UPW8 1703 aa21.61■■□□□ 1.05
SF1-205ENST00000377394 CCDC88BA6NC98 1476 aa21.58■■□□□ 1.05
SF1-205ENST00000377394 SMARCA2P51531 1590 aa21.56■■□□□ 1.04
SF1-205ENST00000377394 ABCC8Q09428 1581 aa21.52■■□□□ 1.04
SF1-205ENST00000377394 MYT1Q01538 1121 aa21.46■■□□□ 1.03
SF1-205ENST00000377394 NEUROD1Q13562 356 aa21.38■■□□□ 1.01
SF1-205ENST00000377394 BICRAQ9NZM4 1560 aa21.37■■□□□ 1.01
SF1-205ENST00000377394 ACIN1Q9UKV3 1341 aaKnown RBP21.37■■□□□ 1.01
SF1-205ENST00000377394 SOGA1O94964 1423 aa21.35■■□□□ 1.01
SF1-205ENST00000377394 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1
SF1-205ENST00000377394 PABPN1Q86U42 306 aaKnown RBP eCLIP21.29■■□□□ 11e-6■□□□□ 9.3
SF1-205ENST00000377394 CEP162Q5TB80 1403 aa21.28■■□□□ 1
SF1-205ENST00000377394 PEG3Q9GZU2 1588 aa21.28■■□□□ 1
SF1-205ENST00000377394 EEA1Q15075 1411 aa21.27■■□□□ 1
SF1-205ENST00000377394 TNIKQ9UKE5 1360 aa21.27■■□□□ 1
SF1-205ENST00000377394 GTF3C3Q9Y5Q9 886 aa21.26■□□□□ 0.99
SF1-205ENST00000377394 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
SF1-205ENST00000377394 CSRNP3Q8WYN3 585 aa21.22■□□□□ 0.99
SF1-205ENST00000377394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.98
SF1-205ENST00000377394 CCER1Q8TC90 406 aaPredicted RBP21.14■□□□□ 0.97
SF1-205ENST00000377394 GOLGA3Q08378 1498 aa21.12■□□□□ 0.97
SF1-205ENST00000377394 UBTFP17480 764 aaKnown RBP21.09■□□□□ 0.97
SF1-205ENST00000377394 ATAD2BQ9ULI0 1458 aa21.09■□□□□ 0.97
SF1-205ENST00000377394 SYNJ1O43426 1573 aa21.07■□□□□ 0.96
SF1-205ENST00000377394 TTBK1Q5TCY1 1321 aaPredicted RBP21.05■□□□□ 0.96
SF1-205ENST00000377394 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
SF1-205ENST00000377394 CENPBP07199 599 aaPredicted RBP21■□□□□ 0.95
SF1-205ENST00000377394 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
SF1-205ENST00000377394 KIF21BO75037 1637 aa20.99■□□□□ 0.95
SF1-205ENST00000377394 DIEXFQ68CQ4 756 aaKnown RBP20.93■□□□□ 0.94
SF1-205ENST00000377394 CLIP1P30622 1438 aa20.86■□□□□ 0.93
SF1-205ENST00000377394 RAPGEF2Q9Y4G8 1499 aa20.83■□□□□ 0.92
SF1-205ENST00000377394 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
SF1-205ENST00000377394 VPS8Q8N3P4 1428 aa20.8■□□□□ 0.92
SF1-205ENST00000377394 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
SF1-205ENST00000377394 YTHDC1Q96MU7 727 aaKnown RBP20.72■□□□□ 0.91
SF1-205ENST00000377394 HMGXB3Q12766 1538 aa20.68■□□□□ 0.9
SF1-205ENST00000377394 NCAPD3P42695 1498 aa20.68■□□□□ 0.9
SF1-205ENST00000377394 HNRNPUL2Q1KMD3 747 aaKnown RBP20.67■□□□□ 0.9
SF1-205ENST00000377394 PRXQ9BXM0 1461 aa20.65■□□□□ 0.9
SF1-205ENST00000377394 ERICH3Q5RHP9 1530 aa20.64■□□□□ 0.9
SF1-205ENST00000377394 ZNF316A6NFI3 1004 aaPredicted RBP20.64■□□□□ 0.89
SF1-205ENST00000377394 APLP2Q06481 763 aa20.62■□□□□ 0.89
SF1-205ENST00000377394 CUX1P39880 1505 aa20.6■□□□□ 0.89
SF1-205ENST00000377394 RANGAP1P46060 587 aaPredicted RBP20.6■□□□□ 0.89
SF1-205ENST00000377394 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
SF1-205ENST00000377394 CFTRP13569 1480 aa20.53■□□□□ 0.88
SF1-205ENST00000377394 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
SF1-205ENST00000377394 MIER1Q8N108 512 aa20.44■□□□□ 0.86
SF1-205ENST00000377394 KANK4Q5T7N3 995 aaPredicted RBP20.43■□□□□ 0.86
SF1-205ENST00000377394 ARHGAP35Q9NRY4 1499 aa20.36■□□□□ 0.85
SF1-205ENST00000377394 DHX57Q6P158 1386 aaKnown RBP20.36■□□□□ 0.85
SF1-205ENST00000377394 CLSPNQ9HAW4 1339 aa20.36■□□□□ 0.85
SF1-205ENST00000377394 RRBP1Q9P2E9 1410 aaKnown RBP20.36■□□□□ 0.85
SF1-205ENST00000377394 PRDM2Q13029 1718 aa20.35■□□□□ 0.85
SF1-205ENST00000377394 BCL11AQ9H165 835 aa20.33■□□□□ 0.84
SF1-205ENST00000377394 IGF1RP08069 1367 aa20.3■□□□□ 0.84
SF1-205ENST00000377394 CUX2O14529 1486 aa20.28■□□□□ 0.84
SF1-205ENST00000377394 CADPSQ9ULU8 1353 aa20.27■□□□□ 0.84
SF1-205ENST00000377394 CCNB3Q8WWL7 1395 aa20.23■□□□□ 0.83
SF1-205ENST00000377394 ANP32EQ9BTT0 268 aa20.2■□□□□ 0.83
SF1-205ENST00000377394 FGD5Q6ZNL6 1462 aa20.2■□□□□ 0.82
SF1-205ENST00000377394 CARMIL1Q5VZK9 1371 aa20.18■□□□□ 0.82
SF1-205ENST00000377394 SUPT16HQ9Y5B9 1047 aaKnown RBP20.17■□□□□ 0.82
SF1-205ENST00000377394 MAP3K1Q13233 1512 aa20.17■□□□□ 0.82
SF1-205ENST00000377394 TIAM1Q13009 1591 aa20.15■□□□□ 0.82
SF1-205ENST00000377394 TSHZ2Q9NRE2 1034 aa20.14■□□□□ 0.82
SF1-205ENST00000377394 LRRC9Q6ZRR7 1453 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms