Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SSU72-203ENST00000378725 619 ntTSL 223.69■■□□□ 1.384e-8■□□□□ 8.4
YBX3P16989 SKA2-209ENST00000583976 570 ntTSL 221.62■■□□□ 1.054e-8■□□□□ 8.4
YBX3P16989 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.26■□□□□ 0.514e-8■□□□□ 8.4
YBX3P16989 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.47■□□□□ 0.394e-8■□□□□ 8.4
YBX3P16989 CNOT1-210ENST00000567133 553 ntTSL 514.49□□□□□ -0.094e-8■□□□□ 8.4
YBX3P16989 SKA2-208ENST00000583927 533 ntTSL 213.04□□□□□ -0.324e-8■□□□□ 8.4
YBX3P16989 SKA2-206ENST00000581068 595 ntTSL 2 BASIC13.01□□□□□ -0.334e-8■□□□□ 8.4
YBX3P16989 WNK1-212ENST00000540885 874 ntTSL 1 (best)12.87□□□□□ -0.354e-8■□□□□ 8.4
YBX3P16989 ACSL3-204ENST00000413316 650 ntTSL 412.41□□□□□ -0.424e-8■□□□□ 8.4
YBX3P16989 SKA2-204ENST00000578519 894 ntTSL 312.21□□□□□ -0.454e-8■□□□□ 8.4
YBX3P16989 MTHFD1-203ENST00000553391 568 ntTSL 410.38□□□□□ -0.754e-8■□□□□ 8.4
YBX3P16989 SEL1L-201ENST00000336735 7925 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.824e-8■□□□□ 8.4
YBX3P16989 SKA2-207ENST00000583380 583 ntTSL 5 BASIC9.71□□□□□ -0.864e-8■□□□□ 8.4
YBX3P16989 ARID2-201ENST00000334344 8642 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.914e-8■□□□□ 8.4
YBX3P16989 SKA2-203ENST00000578105 689 ntTSL 2 BASIC8.7□□□□□ -1.024e-8■□□□□ 8.4
YBX3P16989 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.024e-8■□□□□ 8.4
YBX3P16989 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.47□□□□□ -1.694e-8■□□□□ 8.4
YBX3P16989 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.11□□□□□ -1.754e-8■□□□□ 8.4
YBX3P16989 ARID2-208ENST00000479608 7761 ntTSL 1 (best)3.94□□□□□ -1.784e-8■□□□□ 8.4
YBX3P16989 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC34.37■■■■□ 3.094e-7■□□□□ 8.4
YBX3P16989 PTPRF-207ENST00000436724 2168 ntTSL 1 (best)24.01■■□□□ 1.434e-7■□□□□ 8.4
YBX3P16989 PTPRF-214ENST00000496043 415 ntTSL 517.07■□□□□ 0.324e-7■□□□□ 8.4
YBX3P16989 PTPRF-213ENST00000481019 459 ntTSL 315.89■□□□□ 0.134e-7■□□□□ 8.4
YBX3P16989 PTPRF-202ENST00000372405 1962 ntTSL 1 (best)15.73■□□□□ 0.114e-7■□□□□ 8.4
YBX3P16989 DCTN2-208ENST00000547480 599 ntTSL 220.45■□□□□ 0.867e-8■□□□□ 8.4
YBX3P16989 DCTN2-217ENST00000550750 567 ntTSL 220.45■□□□□ 0.867e-8■□□□□ 8.4
YBX3P16989 DCTN2-207ENST00000547345 566 ntTSL 28.32□□□□□ -1.087e-8■□□□□ 8.4
YBX3P16989 DCTN2-203ENST00000546559 471 ntTSL 37.86□□□□□ -1.157e-8■□□□□ 8.4
YBX3P16989 DCTN2-213ENST00000549712 211 ntTSL 53.36□□□□□ -1.877e-8■□□□□ 8.4
YBX3P16989 LYPLA1-208ENST00000520718 577 ntTSL 1 (best)6.95□□□□□ -1.35e-16■□□□□ 8.4
YBX3P16989 CUL4A-205ENST00000463426 893 ntTSL 332.57■■■□□ 2.81e-8■□□□□ 8.4
YBX3P16989 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.91■■■□□ 2.541e-8■□□□□ 8.4
YBX3P16989 B2M-213ENST00000623550 2329 nt7.27□□□□□ -1.251e-6■□□□□ 8.4
YBX3P16989 MED24-225ENST00000580885 1963 ntTSL 519.15■□□□□ 0.662e-6■□□□□ 8.3
YBX3P16989 MED24-219ENST00000578901 728 ntTSL 1 (best)11.6□□□□□ -0.552e-6■□□□□ 8.3
YBX3P16989 ASAH1-209ENST00000520051 667 ntTSL 523.17■■□□□ 1.37e-8■□□□□ 8.3
YBX3P16989 PAM16-205ENST00000571986 606 ntTSL 323.05■■□□□ 1.281e-6■□□□□ 8.3
YBX3P16989 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.951e-6■□□□□ 8.3
YBX3P16989 PAM16-209ENST00000573614 650 ntTSL 520.28■□□□□ 0.841e-6■□□□□ 8.3
YBX3P16989 PAM16-202ENST00000571178 353 ntTSL 319.78■□□□□ 0.761e-6■□□□□ 8.3
YBX3P16989 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.61e-6■□□□□ 8.3
YBX3P16989 CORO7-PAM16-203ENST00000575334 3815 ntTSL 217.91■□□□□ 0.461e-6■□□□□ 8.3
YBX3P16989 CORO7-PAM16-202ENST00000572467 3284 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31e-6■□□□□ 8.3
YBX3P16989 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC22.69■■□□□ 1.228e-11■□□□□ 8.3
YBX3P16989 PDCD6-203ENST00000505526 1484 ntTSL 1 (best)21.62■■□□□ 1.058e-11■□□□□ 8.3
YBX3P16989 PDCD6-211ENST00000515587 855 ntTSL 1 (best)19.53■□□□□ 0.728e-11■□□□□ 8.3
YBX3P16989 PDLIM5-213ENST00000509357 554 ntTSL 511.49□□□□□ -0.576e-8■□□□□ 8.3
YBX3P16989 PDLIM5-211ENST00000508531 480 ntTSL 47.31□□□□□ -1.246e-8■□□□□ 8.3
YBX3P16989 PDLIM5-218ENST00000513341 794 ntTSL 36.95□□□□□ -1.36e-8■□□□□ 8.3
YBX3P16989 PDLIM5-214ENST00000510099 554 ntTSL 45.17□□□□□ -1.586e-8■□□□□ 8.3
YBX3P16989 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC29.69■■■□□ 2.342e-8■□□□□ 8.3
YBX3P16989 FBXO7-204ENST00000425028 1921 ntTSL 523.47■■□□□ 1.352e-8■□□□□ 8.3
YBX3P16989 FBXO7-203ENST00000420700 1900 ntTSL 519.74■□□□□ 0.752e-8■□□□□ 8.3
YBX3P16989 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.492e-8■□□□□ 8.3
YBX3P16989 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC8.9□□□□□ -0.982e-8■□□□□ 8.3
YBX3P16989 FBXO7-209ENST00000492535 6884 ntTSL 58.02□□□□□ -1.132e-8■□□□□ 8.3
YBX3P16989 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.935e-7■□□□□ 8.3
YBX3P16989 FOXN3-217ENST00000557572 513 ntTSL 38.61□□□□□ -1.035e-7■□□□□ 8.3
YBX3P16989 MKRN1-212ENST00000481705 636 ntTSL 535.06■■■■□ 3.24e-6■□□□□ 8.3
YBX3P16989 PPP4C-211ENST00000567642 658 ntTSL 228.23■■■□□ 2.113e-9■□□□□ 8.3
YBX3P16989 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.484e-6■□□□□ 8.3
YBX3P16989 COMMD7-203ENST00000474815 488 ntTSL 523.24■■□□□ 1.314e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-212ENST00000600231 2534 ntTSL 223.18■■□□□ 1.34e-6■□□□□ 8.3
YBX3P16989 PSTPIP2-203ENST00000588801 1023 ntTSL 523.08■■□□□ 1.294e-6■□□□□ 8.3
YBX3P16989 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.274e-6■□□□□ 8.3
YBX3P16989 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.24e-6■□□□□ 8.3
YBX3P16989 BRD9-201ENST00000466684 1417 ntTSL 222.54■■□□□ 1.24e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.194e-6■□□□□ 8.3
YBX3P16989 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC22.26■■□□□ 1.154e-6■□□□□ 8.3
YBX3P16989 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.134e-6■□□□□ 8.3
YBX3P16989 GLB1-210ENST00000461475 816 ntTSL 321.99■■□□□ 1.114e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-213ENST00000603669 552 ntTSL 521.48■■□□□ 1.034e-6■□□□□ 8.3
YBX3P16989 GLB1-218ENST00000497796 899 ntTSL 321.2■□□□□ 0.984e-6■□□□□ 8.3
YBX3P16989 C8orf76-205ENST00000521310 948 ntTSL 321.02■□□□□ 0.964e-6■□□□□ 8.3
YBX3P16989 PEF1-206ENST00000489164 865 ntTSL 520.92■□□□□ 0.944e-6■□□□□ 8.3
YBX3P16989 BRD9-205ENST00000483234 2211 ntTSL 219.87■□□□□ 0.774e-6■□□□□ 8.3
YBX3P16989 CUL4B-205ENST00000467641 836 ntTSL 319.76■□□□□ 0.754e-6■□□□□ 8.3
YBX3P16989 C8orf76-204ENST00000519791 569 ntTSL 219.64■□□□□ 0.734e-6■□□□□ 8.3
YBX3P16989 WDR18-205ENST00000590354 678 ntTSL 219.59■□□□□ 0.734e-6■□□□□ 8.3
YBX3P16989 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.654e-6■□□□□ 8.3
YBX3P16989 BRD9-217ENST00000519112 861 ntTSL 318.77■□□□□ 0.64e-6■□□□□ 8.3
YBX3P16989 BRD9-218ENST00000519838 396 ntTSL 218.77■□□□□ 0.64e-6■□□□□ 8.3
YBX3P16989 PSTPIP2-202ENST00000587042 859 ntTSL 218.36■□□□□ 0.534e-6■□□□□ 8.3
YBX3P16989 GRSF1-202ENST00000499044 2491 ntTSL 218.2■□□□□ 0.54e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.98■□□□□ 0.474e-6■□□□□ 8.3
YBX3P16989 BRD9-212ENST00000495265 2843 ntTSL 217.91■□□□□ 0.464e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.334e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.93■□□□□ 0.34e-6■□□□□ 8.3
YBX3P16989 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.294e-6■□□□□ 8.3
YBX3P16989 BRD9-210ENST00000493082 750 ntTSL 516.48■□□□□ 0.234e-6■□□□□ 8.3
YBX3P16989 BRD9-208ENST00000489816 3170 ntTSL 1 (best)16.22■□□□□ 0.194e-6■□□□□ 8.3
YBX3P16989 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC16.06■□□□□ 0.164e-6■□□□□ 8.3
YBX3P16989 PEF1-202ENST00000461006 732 ntTSL 515.76■□□□□ 0.114e-6■□□□□ 8.3
YBX3P16989 MRPL54-202ENST00000589174 491 ntTSL 315.41■□□□□ 0.064e-6■□□□□ 8.3
YBX3P16989 PEF1-205ENST00000478502 750 ntTSL 215.31■□□□□ 0.044e-6■□□□□ 8.3
YBX3P16989 SGTA-205ENST00000591984 882 ntTSL 215.29■□□□□ 0.044e-6■□□□□ 8.3
YBX3P16989 BRD9-203ENST00000475706 744 ntTSL 1 (best)15.09■□□□□ 0.014e-6■□□□□ 8.3
YBX3P16989 BRD9-204ENST00000483173 2120 ntTSL 2 BASIC14.72□□□□□ -0.054e-6■□□□□ 8.3
YBX3P16989 GRSF1-207ENST00000514161 1765 ntTSL 214.63□□□□□ -0.074e-6■□□□□ 8.3
YBX3P16989 ATP6V1A-205ENST00000475322 754 ntTSL 314.3□□□□□ -0.124e-6■□□□□ 8.3
Retrieved 100 of 29,075 protein–RNA pairs in 758.1 ms