RNA–Protein interactions for RNA: ENST00000578105.1

SKA2-203, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-203ENST00000578105 AEBP2Q6ZN18 517 aaPredicted RBP24.31■■□□□ 1.48
SKA2-203ENST00000578105 CHIC1Q5VXU3 224 aa22.62■■□□□ 1.21
SKA2-203ENST00000578105 SENP3Q9H4L4 574 aaPredicted RBP20.88■□□□□ 0.93
SKA2-203ENST00000578105 POTEDQ86YR6 584 aa20.81■□□□□ 0.92
SKA2-203ENST00000578105 PHF23Q9BUL5 403 aaPredicted RBP20.46■□□□□ 0.87
SKA2-203ENST00000578105 FOXD1Q16676 465 aa19.68■□□□□ 0.74
SKA2-203ENST00000578105 MSH5O43196 834 aa18.89■□□□□ 0.61
SKA2-203ENST00000578105 PIAS4Q8N2W9 510 aaPredicted RBP18.03■□□□□ 0.48
SKA2-203ENST00000578105 NISCHQ9Y2I1 1504 aa17.91■□□□□ 0.46
SKA2-203ENST00000578105 PPP6R1Q9UPN7 881 aa17.39■□□□□ 0.37
SKA2-203ENST00000578105 ADRA2BP18089 450 aa17.24■□□□□ 0.35
SKA2-203ENST00000578105 CACNB1Q02641 598 aaPredicted RBP17.08■□□□□ 0.32
SKA2-203ENST00000578105 PLPPR3Q6T4P5 718 aa16.71■□□□□ 0.27
SKA2-203ENST00000578105 DMRT2Q9Y5R5 561 aa16.36■□□□□ 0.21
SKA2-203ENST00000578105 MAPK8IP2Q13387 824 aaPredicted RBP16.27■□□□□ 0.2
SKA2-203ENST00000578105 POTEHQ6S545 545 aa16.03■□□□□ 0.16
SKA2-203ENST00000578105 RNF39Q9H2S5 420 aa16.02■□□□□ 0.16
SKA2-203ENST00000578105 DCAF8L1A6NGE4 600 aa15.78■□□□□ 0.12
SKA2-203ENST00000578105 SCAF1Q9H7N4 1312 aaKnown RBP15.69■□□□□ 0.1
SKA2-203ENST00000578105 C1QBPQ07021 282 aaKnown RBP15.69■□□□□ 0.1
SKA2-203ENST00000578105 CCDC180Q9P1Z9 1646 aa15.57■□□□□ 0.08
SKA2-203ENST00000578105 HOXD11P31277 338 aaPredicted RBP15.22■□□□□ 0.03
SKA2-203ENST00000578105 ZCCHC6Q5VYS8 1495 aaKnown RBP15.13■□□□□ 0.01
SKA2-203ENST00000578105 DCAF1Q9Y4B6 1507 aa14.95□□□□□ -0.02
SKA2-203ENST00000578105 DNAJC5BQ9UF47 199 aa14.93□□□□□ -0.02
SKA2-203ENST00000578105 RNF216Q9NWF9 866 aaPredicted RBP14.73□□□□□ -0.05
SKA2-203ENST00000578105 MYO15BQ96JP2 1530 aa14.69□□□□□ -0.06
SKA2-203ENST00000578105 SHROOM4Q9ULL8 1493 aa14.58□□□□□ -0.08
SKA2-203ENST00000578105 DSG3P32926 999 aa14.56□□□□□ -0.08
SKA2-203ENST00000578105 CNKSR2Q8WXI2 1034 aa14.52□□□□□ -0.09
SKA2-203ENST00000578105 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.51□□□□□ -0.092e-10■□□□□ 10.6
SKA2-203ENST00000578105 PPP4R3CPQ6ZMV5 832 aa14.5□□□□□ -0.09
SKA2-203ENST00000578105 DCAF8L2P0C7V8 631 aa14.47□□□□□ -0.09
SKA2-203ENST00000578105 NACADO15069 1562 aa14.41□□□□□ -0.1
SKA2-203ENST00000578105 SP7Q8TDD2 431 aaPredicted RBP14.37□□□□□ -0.11
SKA2-203ENST00000578105 CAPN15O75808 1086 aa14.3□□□□□ -0.12
SKA2-203ENST00000578105 SPINK5Q9NQ38 1064 aaPredicted RBP14.29□□□□□ -0.12
SKA2-203ENST00000578105 SUPT5HO00267 1087 aaKnown RBP14.24□□□□□ -0.13
SKA2-203ENST00000578105 ABCC9O60706 1549 aa14.21□□□□□ -0.13
SKA2-203ENST00000578105 RB1CC1Q8TDY2 1594 aa14.18□□□□□ -0.14
SKA2-203ENST00000578105 SCRIBQ14160 1630 aa14.15□□□□□ -0.14
SKA2-203ENST00000578105 CHRDL2Q6WN34 429 aa14.15□□□□□ -0.14
SKA2-203ENST00000578105 U3KPZ7 1027 aaPredicted RBP14.05□□□□□ -0.16
SKA2-203ENST00000578105 RSF1Q96T23 1441 aaPredicted RBP13.98□□□□□ -0.17
SKA2-203ENST00000578105 ABCB7O75027 752 aa13.87□□□□□ -0.19
SKA2-203ENST00000578105 RBM42Q9BTD8 480 aaKnown RBP13.87□□□□□ -0.19
SKA2-203ENST00000578105 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
SKA2-203ENST00000578105 UNC13AQ9UPW8 1703 aa13.79□□□□□ -0.2
SKA2-203ENST00000578105 PLSCR2Q9NRY7 297 aa13.79□□□□□ -0.2
SKA2-203ENST00000578105 MROH2BQ7Z745 1585 aa13.77□□□□□ -0.21
SKA2-203ENST00000578105 CECR2Q9BXF3 1484 aa13.76□□□□□ -0.21
SKA2-203ENST00000578105 TRHP20396 242 aaPredicted RBP13.76□□□□□ -0.21
SKA2-203ENST00000578105 SMARCA4P51532 1647 aa13.69□□□□□ -0.22
SKA2-203ENST00000578105 HAX1O00165 279 aa13.66□□□□□ -0.22
SKA2-203ENST00000578105 WIZO95785 1651 aa13.66□□□□□ -0.22
SKA2-203ENST00000578105 BICRAQ9NZM4 1560 aa13.64□□□□□ -0.23
SKA2-203ENST00000578105 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
SKA2-203ENST00000578105 ZNF219Q9P2Y4 722 aaPredicted RBP13.63□□□□□ -0.23
SKA2-203ENST00000578105 PEG3Q9GZU2 1588 aa13.6□□□□□ -0.23
SKA2-203ENST00000578105 PIP4P2Q8N4L2 257 aa13.54□□□□□ -0.24
SKA2-203ENST00000578105 EIF4G1Q04637 1599 aaKnown RBP13.49□□□□□ -0.25
SKA2-203ENST00000578105 NCBP3Q53F19 620 aaKnown RBP13.48□□□□□ -0.25
SKA2-203ENST00000578105 TRIM41Q8WV44 630 aa13.48□□□□□ -0.25
SKA2-203ENST00000578105 SMARCA2P51531 1590 aa13.47□□□□□ -0.25
SKA2-203ENST00000578105 LHX8Q68G74 356 aa13.47□□□□□ -0.25
SKA2-203ENST00000578105 APLP2Q06481 763 aa13.44□□□□□ -0.26
SKA2-203ENST00000578105 CCDC88BA6NC98 1476 aa13.43□□□□□ -0.26
SKA2-203ENST00000578105 EVX2Q03828 476 aa13.43□□□□□ -0.26
SKA2-203ENST00000578105 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
SKA2-203ENST00000578105 PABPN1Q86U42 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
SKA2-203ENST00000578105 NPM3O75607 178 aaKnown RBP13.33□□□□□ -0.28
SKA2-203ENST00000578105 BAZ1BQ9UIG0 1483 aaKnown RBP13.32□□□□□ -0.28
SKA2-203ENST00000578105 EEA1Q15075 1411 aa13.3□□□□□ -0.28
SKA2-203ENST00000578105 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
SKA2-203ENST00000578105 AKT1S1Q96B36 256 aa13.28□□□□□ -0.28
SKA2-203ENST00000578105 NCAPD3P42695 1498 aa13.26□□□□□ -0.29
SKA2-203ENST00000578105 LOC105371045A0A1W2PR82 267 aa13.25□□□□□ -0.29
SKA2-203ENST00000578105 FXR2P51116 673 aaKnown RBP eCLIP13.22□□□□□ -0.29
SKA2-203ENST00000578105 REM2Q8IYK8 340 aaPredicted RBP13.19□□□□□ -0.3
SKA2-203ENST00000578105 ABCC8Q09428 1581 aa13.17□□□□□ -0.3
SKA2-203ENST00000578105 WRNQ14191 1432 aaPredicted RBP eCLIP13.17□□□□□ -0.3
SKA2-203ENST00000578105 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.12□□□□□ -0.31
SKA2-203ENST00000578105 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
SKA2-203ENST00000578105 SLC4A2P04920 1241 aa13.11□□□□□ -0.31
SKA2-203ENST00000578105 TRIM26Q12899 539 aaPredicted RBP13.11□□□□□ -0.31
SKA2-203ENST00000578105 FAM9AQ8IZU1 332 aaPredicted RBP13.08□□□□□ -0.32
SKA2-203ENST00000578105 POLA2Q14181 598 aa13.07□□□□□ -0.32
SKA2-203ENST00000578105 PITPNM1O00562 1244 aa13.06□□□□□ -0.32
SKA2-203ENST00000578105 TOP2BQ02880 1626 aa13.06□□□□□ -0.32
SKA2-203ENST00000578105 TNIKQ9UKE5 1360 aa13.06□□□□□ -0.32
SKA2-203ENST00000578105 BIVM-ERCC5R4GMW8 1640 aa13.06□□□□□ -0.32
SKA2-203ENST00000578105 SYNJ1O43426 1573 aa13.04□□□□□ -0.32
SKA2-203ENST00000578105 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
SKA2-203ENST00000578105 PRDM2Q13029 1718 aa13.04□□□□□ -0.32
SKA2-203ENST00000578105 CFTRP13569 1480 aa13.04□□□□□ -0.32
SKA2-203ENST00000578105 HRCP23327 699 aa13.03□□□□□ -0.32
SKA2-203ENST00000578105 PCGF6Q9BYE7 350 aa13.03□□□□□ -0.32
SKA2-203ENST00000578105 GOLGA3Q08378 1498 aa13.03□□□□□ -0.32
SKA2-203ENST00000578105 KIF21BO75037 1637 aa13.02□□□□□ -0.32
SKA2-203ENST00000578105 GABBR2O75899 941 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms