RNA–Protein interactions for RNA: ENST00000513341.5

PDLIM5-218, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-218ENST00000513341 AEBP2Q6ZN18 517 aaPredicted RBP24.59■■□□□ 1.53
PDLIM5-218ENST00000513341 CHIC1Q5VXU3 224 aa23.09■■□□□ 1.29
PDLIM5-218ENST00000513341 SENP3Q9H4L4 574 aaPredicted RBP21.11■□□□□ 0.97
PDLIM5-218ENST00000513341 PHF23Q9BUL5 403 aaPredicted RBP20.73■□□□□ 0.91
PDLIM5-218ENST00000513341 FOXD1Q16676 465 aa19.65■□□□□ 0.74
PDLIM5-218ENST00000513341 POTEDQ86YR6 584 aa18.94■□□□□ 0.62
PDLIM5-218ENST00000513341 MSH5O43196 834 aa18.61■□□□□ 0.57
PDLIM5-218ENST00000513341 PLPPR3Q6T4P5 718 aa18.3■□□□□ 0.52
PDLIM5-218ENST00000513341 PIAS4Q8N2W9 510 aaPredicted RBP18.25■□□□□ 0.51
PDLIM5-218ENST00000513341 PPP6R1Q9UPN7 881 aa18.07■□□□□ 0.48
PDLIM5-218ENST00000513341 ADRA2BP18089 450 aa17.97■□□□□ 0.47
PDLIM5-218ENST00000513341 DMRT2Q9Y5R5 561 aa16.69■□□□□ 0.26
PDLIM5-218ENST00000513341 MAPK8IP2Q13387 824 aaPredicted RBP16.59■□□□□ 0.25
PDLIM5-218ENST00000513341 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
PDLIM5-218ENST00000513341 CACNB1Q02641 598 aaPredicted RBP16.1■□□□□ 0.17
PDLIM5-218ENST00000513341 HOXD11P31277 338 aaPredicted RBP15.97■□□□□ 0.15
PDLIM5-218ENST00000513341 PPP4R3CPQ6ZMV5 832 aa15.94■□□□□ 0.14
PDLIM5-218ENST00000513341 DCAF8L1A6NGE4 600 aa15.84■□□□□ 0.13
PDLIM5-218ENST00000513341 RNF39Q9H2S5 420 aa15.82■□□□□ 0.12
PDLIM5-218ENST00000513341 CNKSR2Q8WXI2 1034 aa15.78■□□□□ 0.12
PDLIM5-218ENST00000513341 RNF216Q9NWF9 866 aaPredicted RBP15.75■□□□□ 0.11
PDLIM5-218ENST00000513341 DNAJC5BQ9UF47 199 aa15.63■□□□□ 0.09
PDLIM5-218ENST00000513341 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
PDLIM5-218ENST00000513341 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
PDLIM5-218ENST00000513341 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.1■□□□□ 0.012e-6■■□□□ 12.3
PDLIM5-218ENST00000513341 NPM3O75607 178 aaKnown RBP15□□□□□ -0.01
PDLIM5-218ENST00000513341 U3KPZ7 1027 aaPredicted RBP14.78□□□□□ -0.04
PDLIM5-218ENST00000513341 POTEHQ6S545 545 aa14.73□□□□□ -0.05
PDLIM5-218ENST00000513341 DSG3P32926 999 aa14.68□□□□□ -0.06
PDLIM5-218ENST00000513341 SPINK5Q9NQ38 1064 aaPredicted RBP14.61□□□□□ -0.07
PDLIM5-218ENST00000513341 CAPN15O75808 1086 aa14.6□□□□□ -0.07
PDLIM5-218ENST00000513341 APLP2Q06481 763 aa14.44□□□□□ -0.1
PDLIM5-218ENST00000513341 SLC4A2P04920 1241 aa14.42□□□□□ -0.1
PDLIM5-218ENST00000513341 KCNA4P22459 653 aa14.36□□□□□ -0.11
PDLIM5-218ENST00000513341 ZNF219Q9P2Y4 722 aaPredicted RBP14.36□□□□□ -0.11
PDLIM5-218ENST00000513341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.33□□□□□ -0.12
PDLIM5-218ENST00000513341 HNRNPUL2Q1KMD3 747 aaKnown RBP14.33□□□□□ -0.12
PDLIM5-218ENST00000513341 TRHP20396 242 aaPredicted RBP14.26□□□□□ -0.13
PDLIM5-218ENST00000513341 SAMD1Q6SPF0 538 aaPredicted RBP14.21□□□□□ -0.13
PDLIM5-218ENST00000513341 ABCB7O75027 752 aa14.18□□□□□ -0.14
PDLIM5-218ENST00000513341 RBM42Q9BTD8 480 aaKnown RBP14.07□□□□□ -0.16
PDLIM5-218ENST00000513341 MYCNP04198 464 aaPredicted RBP13.93□□□□□ -0.18
PDLIM5-218ENST00000513341 POLA2Q14181 598 aa13.85□□□□□ -0.19
PDLIM5-218ENST00000513341 CHRDL2Q6WN34 429 aa13.83□□□□□ -0.2
PDLIM5-218ENST00000513341 AKT1S1Q96B36 256 aa13.66□□□□□ -0.22
PDLIM5-218ENST00000513341 ZBTB12Q9Y330 459 aaPredicted RBP13.66□□□□□ -0.22
PDLIM5-218ENST00000513341 FOXD4L1Q9NU39 408 aa13.58□□□□□ -0.24
PDLIM5-218ENST00000513341 ATF5Q9Y2D1 282 aaPredicted RBP13.53□□□□□ -0.24
PDLIM5-218ENST00000513341 SP7Q8TDD2 431 aaPredicted RBP13.51□□□□□ -0.25
PDLIM5-218ENST00000513341 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
PDLIM5-218ENST00000513341 REM2Q8IYK8 340 aaPredicted RBP13.48□□□□□ -0.25
PDLIM5-218ENST00000513341 PIP4P2Q8N4L2 257 aa13.42□□□□□ -0.26
PDLIM5-218ENST00000513341 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
PDLIM5-218ENST00000513341 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
PDLIM5-218ENST00000513341 PITPNM1O00562 1244 aa13.31□□□□□ -0.28
PDLIM5-218ENST00000513341 ATXN8OSP0DMR3 200 aa13.29□□□□□ -0.28
PDLIM5-218ENST00000513341 HAX1O00165 279 aa13.22□□□□□ -0.29
PDLIM5-218ENST00000513341 ZBTB22O15209 634 aa13.19□□□□□ -0.3
PDLIM5-218ENST00000513341 SPDYE2BA6NHP3 402 aa13.18□□□□□ -0.3
PDLIM5-218ENST00000513341 SPDYE6P0CI01 402 aa13.18□□□□□ -0.3
PDLIM5-218ENST00000513341 SPDYE2Q495Y8 402 aa13.18□□□□□ -0.3
PDLIM5-218ENST00000513341 FBLN2P98095 1184 aa13.11□□□□□ -0.31
PDLIM5-218ENST00000513341 EVX2Q03828 476 aa13.02□□□□□ -0.33
PDLIM5-218ENST00000513341 SPDYE1Q8NFV5 336 aaPredicted RBP13.02□□□□□ -0.33
PDLIM5-218ENST00000513341 SSUH2Q9Y2M2 353 aa12.97□□□□□ -0.33
PDLIM5-218ENST00000513341 PRKAR2AP13861 404 aaKnown RBP12.96□□□□□ -0.33
PDLIM5-218ENST00000513341 MKRN4PQ13434 485 aaPredicted RBP12.94□□□□□ -0.34
PDLIM5-218ENST00000513341 C19orf67A6NJJ6 358 aa12.92□□□□□ -0.34
PDLIM5-218ENST00000513341 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-218ENST00000513341 CLEC11AQ9Y240 323 aa12.89□□□□□ -0.35
PDLIM5-218ENST00000513341 GABBR2O75899 941 aa12.77□□□□□ -0.37
PDLIM5-218ENST00000513341 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
PDLIM5-218ENST00000513341 PABPN1Q86U42 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
PDLIM5-218ENST00000513341 CHADLQ6NUI6 762 aa12.67□□□□□ -0.38
PDLIM5-218ENST00000513341 LHX8Q68G74 356 aa12.65□□□□□ -0.38
PDLIM5-218ENST00000513341 CLCN6P51797 869 aa12.63□□□□□ -0.39
PDLIM5-218ENST00000513341 FARP1Q9Y4F1 1045 aaPredicted RBP12.55□□□□□ -0.4
PDLIM5-218ENST00000513341 CD44P16070 742 aaKnown RBP12.53□□□□□ -0.4
PDLIM5-218ENST00000513341 PLSCR2Q9NRY7 297 aa12.52□□□□□ -0.41
PDLIM5-218ENST00000513341 POTEIP0CG38 1075 aa12.48□□□□□ -0.41
PDLIM5-218ENST00000513341 ZNF579Q8NAF0 562 aaKnown RBP12.39□□□□□ -0.43
PDLIM5-218ENST00000513341 STAG3Q9UJ98 1225 aa12.36□□□□□ -0.43
PDLIM5-218ENST00000513341 DCBLD2Q96PD2 775 aa12.33□□□□□ -0.44
PDLIM5-218ENST00000513341 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
PDLIM5-218ENST00000513341 CSRNP3Q8WYN3 585 aa12.3□□□□□ -0.44
PDLIM5-218ENST00000513341 ZRANB1Q9UGI0 708 aa12.29□□□□□ -0.44
PDLIM5-218ENST00000513341 GALR2O43603 387 aaPredicted RBP12.18□□□□□ -0.46
PDLIM5-218ENST00000513341 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
PDLIM5-218ENST00000513341 PAK3O75914 559 aaPredicted RBP12.15□□□□□ -0.46
PDLIM5-218ENST00000513341 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
PDLIM5-218ENST00000513341 MNX1P50219 401 aaPredicted RBP12.09□□□□□ -0.47
PDLIM5-218ENST00000513341 OTUD5Q96G74 571 aa12.09□□□□□ -0.47
PDLIM5-218ENST00000513341 PHF12Q96QT6 1004 aa12.05□□□□□ -0.48
PDLIM5-218ENST00000513341 POTEB2H3BUK9 544 aa12.04□□□□□ -0.48
PDLIM5-218ENST00000513341 ASTLQ6HA08 431 aaPredicted RBP11.99□□□□□ -0.49
PDLIM5-218ENST00000513341 PELP1Q8IZL8 1130 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-218ENST00000513341 POTEMA6NI47 508 aa11.96□□□□□ -0.49
PDLIM5-218ENST00000513341 C7P10643 843 aa11.94□□□□□ -0.5
PDLIM5-218ENST00000513341 SLC39A7Q92504 469 aa11.93□□□□□ -0.5
PDLIM5-218ENST00000513341 ATMINO43313 823 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms