RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 NISCHQ9Y2I1 1504 aa24.38■■□□□ 1.49
SKA2-204ENST00000578519 AEBP2Q6ZN18 517 aaPredicted RBP23.92■■□□□ 1.42
SKA2-204ENST00000578519 CHIC1Q5VXU3 224 aa22.35■■□□□ 1.17
SKA2-204ENST00000578519 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
SKA2-204ENST00000578519 SENP3Q9H4L4 574 aaPredicted RBP20.64■□□□□ 0.89
SKA2-204ENST00000578519 ZCCHC6Q5VYS8 1495 aaKnown RBP20.5■□□□□ 0.87
SKA2-204ENST00000578519 POTEDQ86YR6 584 aa20.39■□□□□ 0.85
SKA2-204ENST00000578519 DCAF1Q9Y4B6 1507 aa20.23■□□□□ 0.83
SKA2-204ENST00000578519 DCAF8L2P0C7V8 631 aa20.18■□□□□ 0.82
SKA2-204ENST00000578519 PHF23Q9BUL5 403 aaPredicted RBP20.16■□□□□ 0.82
SKA2-204ENST00000578519 SHROOM4Q9ULL8 1493 aa19.97■□□□□ 0.79
SKA2-204ENST00000578519 MYO15BQ96JP2 1530 aa19.95■□□□□ 0.78
SKA2-204ENST00000578519 ABCC9O60706 1549 aa19.79■□□□□ 0.76
SKA2-204ENST00000578519 NACADO15069 1562 aa19.74■□□□□ 0.75
SKA2-204ENST00000578519 RB1CC1Q8TDY2 1594 aa19.52■□□□□ 0.71
SKA2-204ENST00000578519 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
SKA2-204ENST00000578519 SCRIBQ14160 1630 aa19.4■□□□□ 0.7
SKA2-204ENST00000578519 FOXD1Q16676 465 aa19.37■□□□□ 0.69
SKA2-204ENST00000578519 RSF1Q96T23 1441 aaPredicted RBP18.98■□□□□ 0.63
SKA2-204ENST00000578519 BAZ1AQ9NRL2 1556 aaPredicted RBP18.86■□□□□ 0.61
SKA2-204ENST00000578519 UNC13AQ9UPW8 1703 aa18.85■□□□□ 0.61
SKA2-204ENST00000578519 CECR2Q9BXF3 1484 aa18.84■□□□□ 0.61
SKA2-204ENST00000578519 MROH2BQ7Z745 1585 aa18.76■□□□□ 0.59
SKA2-204ENST00000578519 BICRAQ9NZM4 1560 aa18.73■□□□□ 0.59
SKA2-204ENST00000578519 PABPN1Q86U42 306 aaKnown RBP eCLIP18.73■□□□□ 0.59
SKA2-204ENST00000578519 MSH5O43196 834 aa18.66■□□□□ 0.58
SKA2-204ENST00000578519 SMARCA4P51532 1647 aa18.66■□□□□ 0.58
SKA2-204ENST00000578519 WIZO95785 1651 aa18.59■□□□□ 0.57
SKA2-204ENST00000578519 TOP2AP11388 1531 aaKnown RBP18.52■□□□□ 0.56
SKA2-204ENST00000578519 PEG3Q9GZU2 1588 aa18.45■□□□□ 0.54
SKA2-204ENST00000578519 SMARCA2P51531 1590 aa18.42■□□□□ 0.54
SKA2-204ENST00000578519 ATAD2BQ9ULI0 1458 aa18.35■□□□□ 0.53
SKA2-204ENST00000578519 TRIM41Q8WV44 630 aa18.35■□□□□ 0.53
SKA2-204ENST00000578519 CCDC88BA6NC98 1476 aa18.32■□□□□ 0.52
SKA2-204ENST00000578519 BAZ1BQ9UIG0 1483 aaKnown RBP18.3■□□□□ 0.52
SKA2-204ENST00000578519 EIF4G1Q04637 1599 aaKnown RBP18.24■□□□□ 0.51
SKA2-204ENST00000578519 NCAPD3P42695 1498 aa18.2■□□□□ 0.5
SKA2-204ENST00000578519 HMGXB3Q12766 1538 aa18.17■□□□□ 0.5
SKA2-204ENST00000578519 WRNQ14191 1432 aaPredicted RBP eCLIP17.93■□□□□ 0.46
SKA2-204ENST00000578519 EEA1Q15075 1411 aa17.92■□□□□ 0.46
SKA2-204ENST00000578519 LOC105371045A0A1W2PR82 267 aa17.92■□□□□ 0.46
SKA2-204ENST00000578519 FAM9AQ8IZU1 332 aaPredicted RBP17.9■□□□□ 0.46
SKA2-204ENST00000578519 CC2D2AQ9P2K1 1620 aa17.9■□□□□ 0.46
SKA2-204ENST00000578519 ABCC8Q09428 1581 aa17.89■□□□□ 0.45
SKA2-204ENST00000578519 CFTRP13569 1480 aa17.83■□□□□ 0.45
SKA2-204ENST00000578519 CADPSQ9ULU8 1353 aa17.78■□□□□ 0.44
SKA2-204ENST00000578519 PIAS4Q8N2W9 510 aaPredicted RBP17.76■□□□□ 0.43
SKA2-204ENST00000578519 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
SKA2-204ENST00000578519 TOP2BQ02880 1626 aa17.69■□□□□ 0.42
SKA2-204ENST00000578519 SYNJ1O43426 1573 aa17.68■□□□□ 0.42
SKA2-204ENST00000578519 SOGA1O94964 1423 aa17.66■□□□□ 0.42
SKA2-204ENST00000578519 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
SKA2-204ENST00000578519 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
SKA2-204ENST00000578519 TNIKQ9UKE5 1360 aa17.59■□□□□ 0.41
SKA2-204ENST00000578519 GOLGA3Q08378 1498 aa17.57■□□□□ 0.4
SKA2-204ENST00000578519 CEP164Q9UPV0 1460 aa17.57■□□□□ 0.4
SKA2-204ENST00000578519 UBTFP17480 764 aaKnown RBP17.56■□□□□ 0.4
SKA2-204ENST00000578519 EHMT2Q96KQ7 1210 aa17.56■□□□□ 0.4
SKA2-204ENST00000578519 LAMC3Q9Y6N6 1575 aa17.54■□□□□ 0.4
SKA2-204ENST00000578519 CUX1P39880 1505 aa17.54■□□□□ 0.4
SKA2-204ENST00000578519 FANCD2Q9BXW9 1451 aa17.53■□□□□ 0.4
SKA2-204ENST00000578519 KIF27Q86VH2 1401 aa17.52■□□□□ 0.4
SKA2-204ENST00000578519 RUSC2Q8N2Y8 1516 aa17.52■□□□□ 0.39
SKA2-204ENST00000578519 PDS5BQ9NTI5 1447 aa17.5■□□□□ 0.39
SKA2-204ENST00000578519 KIF21BO75037 1637 aa17.5■□□□□ 0.39
SKA2-204ENST00000578519 TRIM26Q12899 539 aaPredicted RBP17.48■□□□□ 0.39
SKA2-204ENST00000578519 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
SKA2-204ENST00000578519 DNMBPQ6XZF7 1577 aa17.4■□□□□ 0.38
SKA2-204ENST00000578519 PCGF6Q9BYE7 350 aa17.4■□□□□ 0.38
SKA2-204ENST00000578519 ERICH3Q5RHP9 1530 aa17.38■□□□□ 0.37
SKA2-204ENST00000578519 FGD5Q6ZNL6 1462 aa17.37■□□□□ 0.37
SKA2-204ENST00000578519 NESP48681 1621 aa17.36■□□□□ 0.37
SKA2-204ENST00000578519 CUX2O14529 1486 aa17.35■□□□□ 0.37
SKA2-204ENST00000578519 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
SKA2-204ENST00000578519 TOPBP1Q92547 1522 aa17.34■□□□□ 0.37
SKA2-204ENST00000578519 RAPGEF2Q9Y4G8 1499 aa17.31■□□□□ 0.36
SKA2-204ENST00000578519 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
SKA2-204ENST00000578519 CLIP1P30622 1438 aa17.29■□□□□ 0.36
SKA2-204ENST00000578519 IGF1RP08069 1367 aa17.28■□□□□ 0.36
SKA2-204ENST00000578519 ABCA10Q8WWZ4 1543 aa17.26■□□□□ 0.35
SKA2-204ENST00000578519 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
SKA2-204ENST00000578519 APLP2Q06481 763 aa17.24■□□□□ 0.35
SKA2-204ENST00000578519 CARMIL1Q5VZK9 1371 aa17.24■□□□□ 0.35
SKA2-204ENST00000578519 DNAJC5BQ9UF47 199 aa17.22■□□□□ 0.35
SKA2-204ENST00000578519 URB2Q14146 1524 aaKnown RBP17.21■□□□□ 0.35
SKA2-204ENST00000578519 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
SKA2-204ENST00000578519 RAD54L2Q9Y4B4 1467 aa17.17■□□□□ 0.34
SKA2-204ENST00000578519 VPS8Q8N3P4 1428 aa17.16■□□□□ 0.34
SKA2-204ENST00000578519 KIF21AQ7Z4S6 1674 aa17.13■□□□□ 0.33
SKA2-204ENST00000578519 CUL7Q14999 1698 aa17.12■□□□□ 0.33
SKA2-204ENST00000578519 HRCP23327 699 aa17.11■□□□□ 0.33
SKA2-204ENST00000578519 PPP6R1Q9UPN7 881 aa17.1■□□□□ 0.33
SKA2-204ENST00000578519 GAPVD1Q14C86 1478 aa17.08■□□□□ 0.32
SKA2-204ENST00000578519 RANGAP1P46060 587 aaPredicted RBP17.08■□□□□ 0.32
SKA2-204ENST00000578519 ERCC6Q03468 1493 aa17.07■□□□□ 0.32
SKA2-204ENST00000578519 ZEB1P37275 1124 aaPredicted RBP17.06■□□□□ 0.32
SKA2-204ENST00000578519 TDRD9Q8NDG6 1382 aaKnown RBP17.04■□□□□ 0.32
SKA2-204ENST00000578519 WDR97A6NE52 1622 aa17.04■□□□□ 0.32
SKA2-204ENST00000578519 IFT140Q96RY7 1462 aa17.04■□□□□ 0.32
SKA2-204ENST00000578519 PPARGC1BQ86YN6 1023 aaKnown RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms