RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 NISCHQ9Y2I1 1504 aa31.21■■■□□ 2.59
PTPRF-202ENST00000372405 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
PTPRF-202ENST00000372405 ZCCHC6Q5VYS8 1495 aaKnown RBP26.24■■□□□ 1.79
PTPRF-202ENST00000372405 DCAF1Q9Y4B6 1507 aa25.77■■□□□ 1.72
PTPRF-202ENST00000372405 DCAF8L2P0C7V8 631 aa25.71■■□□□ 1.71
PTPRF-202ENST00000372405 ABCC9O60706 1549 aa25.64■■□□□ 1.7
PTPRF-202ENST00000372405 SHROOM4Q9ULL8 1493 aa25.56■■□□□ 1.68
PTPRF-202ENST00000372405 MYO15BQ96JP2 1530 aa25.42■■□□□ 1.66
PTPRF-202ENST00000372405 NACADO15069 1562 aa25.25■■□□□ 1.63
PTPRF-202ENST00000372405 SCRIBQ14160 1630 aa25.04■■□□□ 1.6
PTPRF-202ENST00000372405 RB1CC1Q8TDY2 1594 aa25.02■■□□□ 1.6
PTPRF-202ENST00000372405 UNC13AQ9UPW8 1703 aa24.65■■□□□ 1.54
PTPRF-202ENST00000372405 SUPT5HO00267 1087 aaKnown RBP24.59■■□□□ 1.53
PTPRF-202ENST00000372405 BICRAQ9NZM4 1560 aa24.36■■□□□ 1.49
PTPRF-202ENST00000372405 CECR2Q9BXF3 1484 aa24.3■■□□□ 1.48
PTPRF-202ENST00000372405 RSF1Q96T23 1441 aaPredicted RBP24.26■■□□□ 1.47
PTPRF-202ENST00000372405 PABPN1Q86U42 306 aaKnown RBP eCLIP24.2■■□□□ 1.46
PTPRF-202ENST00000372405 MROH2BQ7Z745 1585 aa24.15■■□□□ 1.46
PTPRF-202ENST00000372405 BAZ1AQ9NRL2 1556 aaPredicted RBP24.07■■□□□ 1.44
PTPRF-202ENST00000372405 SMARCA4P51532 1647 aa23.99■■□□□ 1.43
PTPRF-202ENST00000372405 WIZO95785 1651 aa23.98■■□□□ 1.43
PTPRF-202ENST00000372405 PEG3Q9GZU2 1588 aa23.68■■□□□ 1.38
PTPRF-202ENST00000372405 TOP2AP11388 1531 aaKnown RBP23.67■■□□□ 1.38
PTPRF-202ENST00000372405 CHIC1Q5VXU3 224 aa23.6■■□□□ 1.37
PTPRF-202ENST00000372405 EIF4G1Q04637 1599 aaKnown RBP23.57■■□□□ 1.36
PTPRF-202ENST00000372405 ATAD2BQ9ULI0 1458 aa23.56■■□□□ 1.36
PTPRF-202ENST00000372405 SMARCA2P51531 1590 aa23.51■■□□□ 1.35
PTPRF-202ENST00000372405 CCDC88BA6NC98 1476 aa23.45■■□□□ 1.35
PTPRF-202ENST00000372405 BAZ1BQ9UIG0 1483 aaKnown RBP23.41■■□□□ 1.34
PTPRF-202ENST00000372405 NCAPD3P42695 1498 aa23.32■■□□□ 1.32
PTPRF-202ENST00000372405 HMGXB3Q12766 1538 aa23.3■■□□□ 1.32
PTPRF-202ENST00000372405 CC2D2AQ9P2K1 1620 aa23.21■■□□□ 1.31
PTPRF-202ENST00000372405 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
PTPRF-202ENST00000372405 ABCC8Q09428 1581 aa23.03■■□□□ 1.28
PTPRF-202ENST00000372405 CFTRP13569 1480 aa22.85■■□□□ 1.25
PTPRF-202ENST00000372405 WRNQ14191 1432 aaPredicted RBP eCLIP22.8■■□□□ 1.242e-8■■■■■ 75.2
PTPRF-202ENST00000372405 SYNJ1O43426 1573 aa22.77■■□□□ 1.24
PTPRF-202ENST00000372405 PRDM2Q13029 1718 aa22.76■■□□□ 1.23
PTPRF-202ENST00000372405 LOC105371045A0A1W2PR82 267 aa22.73■■□□□ 1.23
PTPRF-202ENST00000372405 CADPSQ9ULU8 1353 aa22.72■■□□□ 1.23
PTPRF-202ENST00000372405 FAM9AQ8IZU1 332 aaPredicted RBP22.7■■□□□ 1.23
PTPRF-202ENST00000372405 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
PTPRF-202ENST00000372405 TOP2BQ02880 1626 aa22.63■■□□□ 1.21
PTPRF-202ENST00000372405 BIVM-ERCC5R4GMW8 1640 aa22.61■■□□□ 1.21
PTPRF-202ENST00000372405 SOGA1O94964 1423 aa22.6■■□□□ 1.21
PTPRF-202ENST00000372405 NESP48681 1621 aa22.58■■□□□ 1.2
PTPRF-202ENST00000372405 CUX1P39880 1505 aa22.57■■□□□ 1.2
PTPRF-202ENST00000372405 RUSC2Q8N2Y8 1516 aa22.54■■□□□ 1.2
PTPRF-202ENST00000372405 LAMC3Q9Y6N6 1575 aa22.51■■□□□ 1.19
PTPRF-202ENST00000372405 FANCD2Q9BXW9 1451 aa22.49■■□□□ 1.19
PTPRF-202ENST00000372405 EEA1Q15075 1411 aa22.46■■□□□ 1.19
PTPRF-202ENST00000372405 EHMT2Q96KQ7 1210 aa22.41■■□□□ 1.18
PTPRF-202ENST00000372405 CSRNP3Q8WYN3 585 aa22.37■■□□□ 1.17
PTPRF-202ENST00000372405 CEP164Q9UPV0 1460 aa22.32■■□□□ 1.16
PTPRF-202ENST00000372405 KIF21AQ7Z4S6 1674 aa22.3■■□□□ 1.16
PTPRF-202ENST00000372405 DNMBPQ6XZF7 1577 aa22.3■■□□□ 1.16
PTPRF-202ENST00000372405 PDS5BQ9NTI5 1447 aa22.3■■□□□ 1.16
PTPRF-202ENST00000372405 FGD5Q6ZNL6 1462 aa22.29■■□□□ 1.16
PTPRF-202ENST00000372405 TOPBP1Q92547 1522 aa22.28■■□□□ 1.16
PTPRF-202ENST00000372405 URB2Q14146 1524 aaKnown RBP22.24■■□□□ 1.15
PTPRF-202ENST00000372405 KIF21BO75037 1637 aa22.23■■□□□ 1.15
PTPRF-202ENST00000372405 GOLGA3Q08378 1498 aa22.19■■□□□ 1.14
PTPRF-202ENST00000372405 KIF27Q86VH2 1401 aa22.19■■□□□ 1.14
PTPRF-202ENST00000372405 POLA1P09884 1462 aaPredicted RBP22.18■■□□□ 1.14
PTPRF-202ENST00000372405 TNIKQ9UKE5 1360 aa22.14■■□□□ 1.14
PTPRF-202ENST00000372405 CUX2O14529 1486 aa22.14■■□□□ 1.14
PTPRF-202ENST00000372405 RAD54L2Q9Y4B4 1467 aa22.13■■□□□ 1.13
PTPRF-202ENST00000372405 RAPGEF2Q9Y4G8 1499 aa22.13■■□□□ 1.13
PTPRF-202ENST00000372405 PRXQ9BXM0 1461 aa22.11■■□□□ 1.13
PTPRF-202ENST00000372405 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.13
PTPRF-202ENST00000372405 UBTFP17480 764 aaKnown RBP22.07■■□□□ 1.12
PTPRF-202ENST00000372405 CEP162Q5TB80 1403 aa22.06■■□□□ 1.12
PTPRF-202ENST00000372405 WDR97A6NE52 1622 aa22.05■■□□□ 1.12
PTPRF-202ENST00000372405 ERICH3Q5RHP9 1530 aa22.05■■□□□ 1.12
PTPRF-202ENST00000372405 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
PTPRF-202ENST00000372405 IGF1RP08069 1367 aa22.03■■□□□ 1.12
PTPRF-202ENST00000372405 TARBP1Q13395 1621 aaKnown RBP21.96■■□□□ 1.11
PTPRF-202ENST00000372405 WDR62O43379 1518 aa21.95■■□□□ 1.1
PTPRF-202ENST00000372405 ABCA5Q8WWZ7 1642 aa21.93■■□□□ 1.1
PTPRF-202ENST00000372405 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
PTPRF-202ENST00000372405 THOC2Q8NI27 1593 aaKnown RBP21.9■■□□□ 1.1
PTPRF-202ENST00000372405 CARMIL1Q5VZK9 1371 aa21.89■■□□□ 1.1
PTPRF-202ENST00000372405 TDRD9Q8NDG6 1382 aaKnown RBP21.88■■□□□ 1.09
PTPRF-202ENST00000372405 CLIP1P30622 1438 aa21.85■■□□□ 1.09
PTPRF-202ENST00000372405 GAPVD1Q14C86 1478 aa21.84■■□□□ 1.09
PTPRF-202ENST00000372405 CUL7Q14999 1698 aa21.83■■□□□ 1.08
PTPRF-202ENST00000372405 IFT140Q96RY7 1462 aa21.77■■□□□ 1.08
PTPRF-202ENST00000372405 PBRM1Q86U86 1689 aa21.75■■□□□ 1.07
PTPRF-202ENST00000372405 RANGAP1P46060 587 aaPredicted RBP21.74■■□□□ 1.07
PTPRF-202ENST00000372405 PCGF6Q9BYE7 350 aa21.74■■□□□ 1.07
PTPRF-202ENST00000372405 AQRO60306 1485 aaKnown RBP eCLIP21.74■■□□□ 1.071e-6■□□□□ 8.9
PTPRF-202ENST00000372405 ZNF608Q9ULD9 1512 aaPredicted RBP21.73■■□□□ 1.07
PTPRF-202ENST00000372405 ARAP1Q96P48 1450 aa21.68■■□□□ 1.06
PTPRF-202ENST00000372405 VPS8Q8N3P4 1428 aa21.68■■□□□ 1.06
PTPRF-202ENST00000372405 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
PTPRF-202ENST00000372405 PPARGC1BQ86YN6 1023 aaKnown RBP21.67■■□□□ 1.06
PTPRF-202ENST00000372405 ARHGAP35Q9NRY4 1499 aa21.65■■□□□ 1.06
PTPRF-202ENST00000372405 EIF4G3O43432 1585 aaKnown RBP21.64■■□□□ 1.05
PTPRF-202ENST00000372405 CTTNBP2Q8WZ74 1663 aa21.64■■□□□ 1.05
PTPRF-202ENST00000372405 GRIN2BQ13224 1484 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms