RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 NISCHQ9Y2I1 1504 aa47.42■■■■■ 5.18
PTPRF-207ENST00000436724 CCDC180Q9P1Z9 1646 aa41.14■■■■■ 4.18
PTPRF-207ENST00000436724 ZCCHC6Q5VYS8 1495 aaKnown RBP39.85■■■■□ 3.97
PTPRF-207ENST00000436724 DCAF8L2P0C7V8 631 aa39.38■■■■□ 3.89
PTPRF-207ENST00000436724 SHROOM4Q9ULL8 1493 aa39.08■■■■□ 3.85
PTPRF-207ENST00000436724 DCAF1Q9Y4B6 1507 aa39.06■■■■□ 3.84
PTPRF-207ENST00000436724 ABCC9O60706 1549 aa39.03■■■■□ 3.84
PTPRF-207ENST00000436724 MYO15BQ96JP2 1530 aa38.5■■■■□ 3.75
PTPRF-207ENST00000436724 NACADO15069 1562 aa38.31■■■■□ 3.72
PTPRF-207ENST00000436724 SCRIBQ14160 1630 aa38.08■■■■□ 3.69
PTPRF-207ENST00000436724 RB1CC1Q8TDY2 1594 aa37.97■■■■□ 3.67
PTPRF-207ENST00000436724 SUPT5HO00267 1087 aaKnown RBP37.66■■■■□ 3.62
PTPRF-207ENST00000436724 UNC13AQ9UPW8 1703 aa37.32■■■■□ 3.57
PTPRF-207ENST00000436724 CECR2Q9BXF3 1484 aa36.97■■■■□ 3.51
PTPRF-207ENST00000436724 BICRAQ9NZM4 1560 aa36.92■■■■□ 3.5
PTPRF-207ENST00000436724 PABPN1Q86U42 306 aaKnown RBP eCLIP36.92■■■■□ 3.5
PTPRF-207ENST00000436724 RSF1Q96T23 1441 aaPredicted RBP36.91■■■■□ 3.5
PTPRF-207ENST00000436724 MROH2BQ7Z745 1585 aa36.73■■■■□ 3.47
PTPRF-207ENST00000436724 BAZ1AQ9NRL2 1556 aaPredicted RBP36.56■■■■□ 3.44
PTPRF-207ENST00000436724 WIZO95785 1651 aa36.45■■■■□ 3.43
PTPRF-207ENST00000436724 SMARCA4P51532 1647 aa36.42■■■■□ 3.42
PTPRF-207ENST00000436724 CHIC1Q5VXU3 224 aa36.03■■■■□ 3.36
PTPRF-207ENST00000436724 TOP2AP11388 1531 aaKnown RBP35.95■■■■□ 3.35
PTPRF-207ENST00000436724 PEG3Q9GZU2 1588 aa35.89■■■■□ 3.34
PTPRF-207ENST00000436724 ATAD2BQ9ULI0 1458 aa35.8■■■■□ 3.32
PTPRF-207ENST00000436724 EIF4G1Q04637 1599 aaKnown RBP35.79■■■■□ 3.32
PTPRF-207ENST00000436724 SMARCA2P51531 1590 aa35.7■■■■□ 3.31
PTPRF-207ENST00000436724 CCDC88BA6NC98 1476 aa35.68■■■■□ 3.3
PTPRF-207ENST00000436724 BAZ1BQ9UIG0 1483 aaKnown RBP35.61■■■■□ 3.29
PTPRF-207ENST00000436724 NCAPD3P42695 1498 aa35.4■■■■□ 3.26
PTPRF-207ENST00000436724 HMGXB3Q12766 1538 aa35.33■■■■□ 3.25
PTPRF-207ENST00000436724 TRIM41Q8WV44 630 aa35.28■■■■□ 3.24
PTPRF-207ENST00000436724 CC2D2AQ9P2K1 1620 aa35.24■■■■□ 3.23
PTPRF-207ENST00000436724 ABCC8Q09428 1581 aa35.07■■■■□ 3.2
PTPRF-207ENST00000436724 FAM9AQ8IZU1 332 aaPredicted RBP34.8■■■■□ 3.16
PTPRF-207ENST00000436724 LOC105371045A0A1W2PR82 267 aa34.79■■■■□ 3.16
PTPRF-207ENST00000436724 WRNQ14191 1432 aaPredicted RBP eCLIP34.72■■■■□ 3.152e-8■■■■■ 75.2
PTPRF-207ENST00000436724 CFTRP13569 1480 aa34.7■■■■□ 3.15
PTPRF-207ENST00000436724 SYNJ1O43426 1573 aa34.61■■■■□ 3.13
PTPRF-207ENST00000436724 CADPSQ9ULU8 1353 aa34.56■■■■□ 3.12
PTPRF-207ENST00000436724 DNAJC5BQ9UF47 199 aa34.55■■■■□ 3.12
PTPRF-207ENST00000436724 PRDM2Q13029 1718 aa34.45■■■■□ 3.1
PTPRF-207ENST00000436724 SOGA1O94964 1423 aa34.44■■■■□ 3.1
PTPRF-207ENST00000436724 EHMT2Q96KQ7 1210 aa34.43■■■■□ 3.1
PTPRF-207ENST00000436724 TOP2BQ02880 1626 aa34.37■■■■□ 3.09
PTPRF-207ENST00000436724 NESP48681 1621 aa34.34■■■■□ 3.09
PTPRF-207ENST00000436724 RUSC2Q8N2Y8 1516 aa34.34■■■■□ 3.09
PTPRF-207ENST00000436724 BIVM-ERCC5R4GMW8 1640 aa34.3■■■■□ 3.08
PTPRF-207ENST00000436724 CUX1P39880 1505 aa34.3■■■■□ 3.08
PTPRF-207ENST00000436724 FANCD2Q9BXW9 1451 aa34.2■■■■□ 3.07
PTPRF-207ENST00000436724 EEA1Q15075 1411 aa34.17■■■■□ 3.06
PTPRF-207ENST00000436724 LAMC3Q9Y6N6 1575 aa34.15■■■■□ 3.06
PTPRF-207ENST00000436724 CSRNP3Q8WYN3 585 aa34.13■■■■□ 3.05
PTPRF-207ENST00000436724 CEP164Q9UPV0 1460 aa33.94■■■■□ 3.02
PTPRF-207ENST00000436724 PDS5BQ9NTI5 1447 aa33.91■■■■□ 3.02
PTPRF-207ENST00000436724 FGD5Q6ZNL6 1462 aa33.9■■■■□ 3.02
PTPRF-207ENST00000436724 DNMBPQ6XZF7 1577 aa33.86■■■■□ 3.01
PTPRF-207ENST00000436724 TOPBP1Q92547 1522 aa33.85■■■■□ 3.01
PTPRF-207ENST00000436724 KIF21AQ7Z4S6 1674 aa33.84■■■■□ 3.01
PTPRF-207ENST00000436724 GOLGA3Q08378 1498 aa33.8■■■■□ 3
PTPRF-207ENST00000436724 URB2Q14146 1524 aaKnown RBP33.79■■■■□ 3
PTPRF-207ENST00000436724 KIF27Q86VH2 1401 aa33.79■■■■□ 3
PTPRF-207ENST00000436724 UBTFP17480 764 aaKnown RBP33.78■■■■□ 3
PTPRF-207ENST00000436724 KIF21BO75037 1637 aa33.77■■■■□ 3
PTPRF-207ENST00000436724 TNIKQ9UKE5 1360 aa33.73■■■□□ 2.99
PTPRF-207ENST00000436724 CUX2O14529 1486 aa33.73■■■□□ 2.99
PTPRF-207ENST00000436724 POLA1P09884 1462 aaPredicted RBP33.72■■■□□ 2.99
PTPRF-207ENST00000436724 RAPGEF2Q9Y4G8 1499 aa33.7■■■□□ 2.99
PTPRF-207ENST00000436724 RAD54L2Q9Y4B4 1467 aa33.68■■■□□ 2.98
PTPRF-207ENST00000436724 CEP162Q5TB80 1403 aa33.64■■■□□ 2.98
PTPRF-207ENST00000436724 PRXQ9BXM0 1461 aa33.61■■■□□ 2.97
PTPRF-207ENST00000436724 ABCA10Q8WWZ4 1543 aa33.54■■■□□ 2.96
PTPRF-207ENST00000436724 IGF1RP08069 1367 aa33.53■■■□□ 2.96
PTPRF-207ENST00000436724 ERICH3Q5RHP9 1530 aa33.5■■■□□ 2.95
PTPRF-207ENST00000436724 MRC2Q9UBG0 1479 aa33.48■■■□□ 2.95
PTPRF-207ENST00000436724 WDR97A6NE52 1622 aa33.41■■■□□ 2.94
PTPRF-207ENST00000436724 ERCC6Q03468 1493 aa33.38■■■□□ 2.93
PTPRF-207ENST00000436724 RANGAP1P46060 587 aaPredicted RBP33.36■■■□□ 2.93
PTPRF-207ENST00000436724 CARMIL1Q5VZK9 1371 aa33.35■■■□□ 2.93
PTPRF-207ENST00000436724 TDRD9Q8NDG6 1382 aaKnown RBP33.35■■■□□ 2.93
PTPRF-207ENST00000436724 PCGF6Q9BYE7 350 aa33.34■■■□□ 2.93
PTPRF-207ENST00000436724 CLIP1P30622 1438 aa33.33■■■□□ 2.93
PTPRF-207ENST00000436724 TARBP1Q13395 1621 aaKnown RBP33.31■■■□□ 2.92
PTPRF-207ENST00000436724 WDR62O43379 1518 aa33.29■■■□□ 2.92
PTPRF-207ENST00000436724 ABCA5Q8WWZ7 1642 aa33.26■■■□□ 2.91
PTPRF-207ENST00000436724 PPARGC1BQ86YN6 1023 aaKnown RBP33.24■■■□□ 2.91
PTPRF-207ENST00000436724 GAPVD1Q14C86 1478 aa33.22■■■□□ 2.91
PTPRF-207ENST00000436724 THOC2Q8NI27 1593 aaKnown RBP33.18■■■□□ 2.9
PTPRF-207ENST00000436724 TRIM26Q12899 539 aaPredicted RBP33.15■■■□□ 2.9
PTPRF-207ENST00000436724 CUL7Q14999 1698 aa33.14■■■□□ 2.9
PTPRF-207ENST00000436724 AQRO60306 1485 aaKnown RBP eCLIP33.1■■■□□ 2.891e-6■□□□□ 8.9
PTPRF-207ENST00000436724 IFT140Q96RY7 1462 aa33.07■■■□□ 2.89
PTPRF-207ENST00000436724 ZNF608Q9ULD9 1512 aaPredicted RBP33.05■■■□□ 2.88
PTPRF-207ENST00000436724 VPS8Q8N3P4 1428 aa33.02■■■□□ 2.88
PTPRF-207ENST00000436724 PBRM1Q86U86 1689 aa33■■■□□ 2.87
PTPRF-207ENST00000436724 ARAP1Q96P48 1450 aa32.99■■■□□ 2.87
PTPRF-207ENST00000436724 TTBK1Q5TCY1 1321 aaPredicted RBP32.95■■■□□ 2.87
PTPRF-207ENST00000436724 ARHGAP35Q9NRY4 1499 aa32.95■■■□□ 2.87
PTPRF-207ENST00000436724 GRIN2BQ13224 1484 aa32.9■■■□□ 2.86
PTPRF-207ENST00000436724 EIF4G3O43432 1585 aaKnown RBP32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms