RNA–Protein interactions for RNA: ENST00000583380.5

SKA2-207, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 5 BASIC

Gene SKA2, Length 583 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-207ENST00000583380 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
SKA2-207ENST00000583380 PELP1Q8IZL8 1130 aaKnown RBP16.84■□□□□ 0.29
SKA2-207ENST00000583380 MYT1Q01538 1121 aa16.69■□□□□ 0.26
SKA2-207ENST00000583380 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
SKA2-207ENST00000583380 TTBK1Q5TCY1 1321 aaPredicted RBP15.96■□□□□ 0.15
SKA2-207ENST00000583380 NISCHQ9Y2I1 1504 aa15.84■□□□□ 0.13
SKA2-207ENST00000583380 HRCP23327 699 aa15.76■□□□□ 0.11
SKA2-207ENST00000583380 ZEB1P37275 1124 aaPredicted RBP15.18■□□□□ 0.02
SKA2-207ENST00000583380 SCAF1Q9H7N4 1312 aaKnown RBP14.9□□□□□ -0.02
SKA2-207ENST00000583380 DCAF1Q9Y4B6 1507 aa14.87□□□□□ -0.03
SKA2-207ENST00000583380 SENP3Q9H4L4 574 aaPredicted RBP14.87□□□□□ -0.03
SKA2-207ENST00000583380 ERICH6Q7L0X2 663 aa14.83□□□□□ -0.04
SKA2-207ENST00000583380 CENPBP07199 599 aaPredicted RBP14.79□□□□□ -0.04
SKA2-207ENST00000583380 PCGF6Q9BYE7 350 aa14.78□□□□□ -0.04
SKA2-207ENST00000583380 CCDC180Q9P1Z9 1646 aa14.73□□□□□ -0.05
SKA2-207ENST00000583380 ACIN1Q9UKV3 1341 aaKnown RBP14.69□□□□□ -0.06
SKA2-207ENST00000583380 TRIM26Q12899 539 aaPredicted RBP14.67□□□□□ -0.06
SKA2-207ENST00000583380 PPARGC1BQ86YN6 1023 aaKnown RBP14.65□□□□□ -0.06
SKA2-207ENST00000583380 PHF23Q9BUL5 403 aaPredicted RBP14.56□□□□□ -0.08
SKA2-207ENST00000583380 CLSPNQ9HAW4 1339 aa14.55□□□□□ -0.08
SKA2-207ENST00000583380 BCL11AQ9H165 835 aa14.42□□□□□ -0.1
SKA2-207ENST00000583380 GTF3C3Q9Y5Q9 886 aa14.38□□□□□ -0.11
SKA2-207ENST00000583380 MYO15BQ96JP2 1530 aa14.33□□□□□ -0.12
SKA2-207ENST00000583380 APLP2Q06481 763 aa14.33□□□□□ -0.12
SKA2-207ENST00000583380 NEUROD1Q13562 356 aa14.29□□□□□ -0.12
SKA2-207ENST00000583380 ANP32EQ9BTT0 268 aa14.28□□□□□ -0.12
SKA2-207ENST00000583380 PRKCSHP14314 528 aaPredicted RBP14.24□□□□□ -0.13
SKA2-207ENST00000583380 MYT1LQ9UL68 1186 aa14.21□□□□□ -0.13
SKA2-207ENST00000583380 DIEXFQ68CQ4 756 aaKnown RBP14.08□□□□□ -0.16
SKA2-207ENST00000583380 FAM9AQ8IZU1 332 aaPredicted RBP14.06□□□□□ -0.16
SKA2-207ENST00000583380 SUPT5HO00267 1087 aaKnown RBP14.05□□□□□ -0.16
SKA2-207ENST00000583380 TRIM41Q8WV44 630 aa13.88□□□□□ -0.19
SKA2-207ENST00000583380 ERICH6BQ5W0A0 696 aa13.86□□□□□ -0.19
SKA2-207ENST00000583380 FOXD1Q16676 465 aa13.82□□□□□ -0.2
SKA2-207ENST00000583380 ZNF316A6NFI3 1004 aaPredicted RBP13.8□□□□□ -0.2
SKA2-207ENST00000583380 CSRNP3Q8WYN3 585 aa13.76□□□□□ -0.21
SKA2-207ENST00000583380 CCER1Q8TC90 406 aaPredicted RBP13.75□□□□□ -0.21
SKA2-207ENST00000583380 SLC24A1O60721 1099 aa13.71□□□□□ -0.21
SKA2-207ENST00000583380 TSHZ2Q9NRE2 1034 aa13.71□□□□□ -0.21
SKA2-207ENST00000583380 SHROOM4Q9ULL8 1493 aa13.67□□□□□ -0.22
SKA2-207ENST00000583380 LOC105371045A0A1W2PR82 267 aa13.65□□□□□ -0.22
SKA2-207ENST00000583380 SUPT16HQ9Y5B9 1047 aaKnown RBP13.65□□□□□ -0.22
SKA2-207ENST00000583380 UBE2Q2Q8WVN8 375 aa13.61□□□□□ -0.23
SKA2-207ENST00000583380 ZCCHC6Q5VYS8 1495 aaKnown RBP13.61□□□□□ -0.23
SKA2-207ENST00000583380 DAXXQ9UER7 740 aaPredicted RBP13.59□□□□□ -0.23
SKA2-207ENST00000583380 FANCIQ9NVI1 1328 aa13.55□□□□□ -0.24
SKA2-207ENST00000583380 EIF5BO60841 1220 aaKnown RBP13.44□□□□□ -0.26
SKA2-207ENST00000583380 MIER1Q8N108 512 aa13.44□□□□□ -0.26
SKA2-207ENST00000583380 YTHDC1Q96MU7 727 aaKnown RBP13.44□□□□□ -0.26
SKA2-207ENST00000583380 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.41□□□□□ -0.26
SKA2-207ENST00000583380 NEFLP07196 543 aa13.41□□□□□ -0.26
SKA2-207ENST00000583380 WRNQ14191 1432 aaPredicted RBP eCLIP13.4□□□□□ -0.26
SKA2-207ENST00000583380 RBM19Q9Y4C8 960 aaKnown RBP13.4□□□□□ -0.26
SKA2-207ENST00000583380 GLIPR1L2Q4G1C9 344 aa13.32□□□□□ -0.28
SKA2-207ENST00000583380 POTEDQ86YR6 584 aa13.32□□□□□ -0.28
SKA2-207ENST00000583380 DEKP35659 375 aaKnown RBP13.31□□□□□ -0.28
SKA2-207ENST00000583380 CDK11AQ9UQ88 783 aaPredicted RBP13.25□□□□□ -0.29
SKA2-207ENST00000583380 ANO8Q9HCE9 1232 aaPredicted RBP13.2□□□□□ -0.3
SKA2-207ENST00000583380 MSH5O43196 834 aa13.17□□□□□ -0.3
SKA2-207ENST00000583380 RTL5Q5HYW3 569 aaPredicted RBP13.17□□□□□ -0.3
SKA2-207ENST00000583380 USP35Q9P2H5 1018 aa13.17□□□□□ -0.3
SKA2-207ENST00000583380 PKNOX2Q96KN3 472 aa13.13□□□□□ -0.31
SKA2-207ENST00000583380 C11orf95C9JLR9 678 aaPredicted RBP13.11□□□□□ -0.31
SKA2-207ENST00000583380 FKBP8Q14318 412 aa13.11□□□□□ -0.31
SKA2-207ENST00000583380 RSPH6AQ9H0K4 717 aa13.1□□□□□ -0.31
SKA2-207ENST00000583380 CCER2I3L3R5 266 aa13.06□□□□□ -0.32
SKA2-207ENST00000583380 NOP58Q9Y2X3 529 aaKnown RBP13.05□□□□□ -0.32
SKA2-207ENST00000583380 RB1CC1Q8TDY2 1594 aa13.03□□□□□ -0.32
SKA2-207ENST00000583380 SALL2Q9Y467 1007 aaPredicted RBP13.03□□□□□ -0.32
SKA2-207ENST00000583380 ABCC9O60706 1549 aa13.02□□□□□ -0.33
SKA2-207ENST00000583380 EEA1Q15075 1411 aa13.01□□□□□ -0.33
SKA2-207ENST00000583380 TNIKQ9UKE5 1360 aa12.97□□□□□ -0.33
SKA2-207ENST00000583380 CCDC136Q96JN2 1154 aa12.96□□□□□ -0.33
SKA2-207ENST00000583380 ANP32AP39687 249 aaKnown RBP12.94□□□□□ -0.34
SKA2-207ENST00000583380 PPP4R2Q9NY27 417 aa12.93□□□□□ -0.34
SKA2-207ENST00000583380 PODXL2Q9NZ53 605 aa12.92□□□□□ -0.34
SKA2-207ENST00000583380 PPM1GO15355 546 aaPredicted RBP12.91□□□□□ -0.34
SKA2-207ENST00000583380 WASHC2AQ641Q2 1341 aa12.9□□□□□ -0.34
SKA2-207ENST00000583380 PIAS4Q8N2W9 510 aaPredicted RBP12.9□□□□□ -0.34
SKA2-207ENST00000583380 TIMELESSQ9UNS1 1208 aa12.9□□□□□ -0.34
SKA2-207ENST00000583380 WASHC2CQ9Y4E1 1318 aa12.89□□□□□ -0.35
SKA2-207ENST00000583380 PLPPR3Q6T4P5 718 aa12.87□□□□□ -0.35
SKA2-207ENST00000583380 IPO9Q96P70 1041 aaKnown RBP12.87□□□□□ -0.35
SKA2-207ENST00000583380 ZBTB47Q9UFB7 747 aaPredicted RBP12.87□□□□□ -0.35
SKA2-207ENST00000583380 CEP162Q5TB80 1403 aa12.87□□□□□ -0.35
SKA2-207ENST00000583380 BCANQ96GW7 911 aa12.85□□□□□ -0.35
SKA2-207ENST00000583380 RSF1Q96T23 1441 aaPredicted RBP12.82□□□□□ -0.36
SKA2-207ENST00000583380 FAM43AQ8N2R8 423 aa12.82□□□□□ -0.36
SKA2-207ENST00000583380 PPP6R1Q9UPN7 881 aa12.82□□□□□ -0.36
SKA2-207ENST00000583380 RRP9O43818 475 aaKnown RBP12.79□□□□□ -0.36
SKA2-207ENST00000583380 ANP32CO43423 234 aa12.78□□□□□ -0.36
SKA2-207ENST00000583380 CUX2O14529 1486 aa12.73□□□□□ -0.37
SKA2-207ENST00000583380 DHX57Q6P158 1386 aaKnown RBP12.73□□□□□ -0.37
SKA2-207ENST00000583380 NBR1Q14596 966 aa12.73□□□□□ -0.37
SKA2-207ENST00000583380 ADRA2BP18089 450 aa12.72□□□□□ -0.37
SKA2-207ENST00000583380 IL27Q8NEV9 243 aa12.72□□□□□ -0.37
SKA2-207ENST00000583380 DDRGK1Q96HY6 314 aa12.71□□□□□ -0.37
SKA2-207ENST00000583380 NEFMP07197 916 aa12.69□□□□□ -0.38
SKA2-207ENST00000583380 GOLGA3Q08378 1498 aa12.69□□□□□ -0.38
SKA2-207ENST00000583380 CEP164Q9UPV0 1460 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms