RNA–Protein interactions for RNA: ENST00000599564.5

GRAMD1A-211, Transcript of GRAM domain containing 1A, humanhuman

TSL 5 BASIC

Gene GRAMD1A, Length 2,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD1A-211ENST00000599564 NISCHQ9Y2I1 1504 aa31.92■■■□□ 2.7
GRAMD1A-211ENST00000599564 SHROOM4Q9ULL8 1493 aa28.54■■■□□ 2.16
GRAMD1A-211ENST00000599564 HRCP23327 699 aa28.39■■■□□ 2.14
GRAMD1A-211ENST00000599564 SUPT5HO00267 1087 aaKnown RBP28.38■■■□□ 2.13
GRAMD1A-211ENST00000599564 PPARGC1BQ86YN6 1023 aaKnown RBP28.03■■■□□ 2.08
GRAMD1A-211ENST00000599564 PCGF6Q9BYE7 350 aa28.02■■■□□ 2.08
GRAMD1A-211ENST00000599564 MYO15BQ96JP2 1530 aa27.94■■■□□ 2.06
GRAMD1A-211ENST00000599564 CHIC1Q5VXU3 224 aa27.73■■■□□ 2.03
GRAMD1A-211ENST00000599564 LOC105371045A0A1W2PR82 267 aa27.23■■□□□ 1.95
GRAMD1A-211ENST00000599564 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
GRAMD1A-211ENST00000599564 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
GRAMD1A-211ENST00000599564 PELP1Q8IZL8 1130 aaKnown RBP27.03■■□□□ 1.92
GRAMD1A-211ENST00000599564 TRIM26Q12899 539 aaPredicted RBP26.98■■□□□ 1.91
GRAMD1A-211ENST00000599564 DCAF8L2P0C7V8 631 aa26.97■■□□□ 1.91
GRAMD1A-211ENST00000599564 SCAF1Q9H7N4 1312 aaKnown RBP26.89■■□□□ 1.9
GRAMD1A-211ENST00000599564 CCDC180Q9P1Z9 1646 aa26.77■■□□□ 1.88
GRAMD1A-211ENST00000599564 ZEB1P37275 1124 aaPredicted RBP26.62■■□□□ 1.85
GRAMD1A-211ENST00000599564 EHMT2Q96KQ7 1210 aa26.33■■□□□ 1.8
GRAMD1A-211ENST00000599564 FAM9AQ8IZU1 332 aaPredicted RBP26.29■■□□□ 1.8
GRAMD1A-211ENST00000599564 NEUROD1Q13562 356 aa26.21■■□□□ 1.79
GRAMD1A-211ENST00000599564 ACIN1Q9UKV3 1341 aaKnown RBP26.19■■□□□ 1.78
GRAMD1A-211ENST00000599564 TRIM41Q8WV44 630 aa26.14■■□□□ 1.77
GRAMD1A-211ENST00000599564 GTF3C3Q9Y5Q9 886 aa26.06■■□□□ 1.76
GRAMD1A-211ENST00000599564 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.03■■□□□ 1.76
GRAMD1A-211ENST00000599564 CCER1Q8TC90 406 aaPredicted RBP25.91■■□□□ 1.74
GRAMD1A-211ENST00000599564 MYT1Q01538 1121 aa25.85■■□□□ 1.73
GRAMD1A-211ENST00000599564 DIEXFQ68CQ4 756 aaKnown RBP25.85■■□□□ 1.73
GRAMD1A-211ENST00000599564 CENPBP07199 599 aaPredicted RBP25.83■■□□□ 1.73
GRAMD1A-211ENST00000599564 ABCC9O60706 1549 aa25.76■■□□□ 1.72
GRAMD1A-211ENST00000599564 RSF1Q96T23 1441 aaPredicted RBP25.73■■□□□ 1.71
GRAMD1A-211ENST00000599564 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
GRAMD1A-211ENST00000599564 TTBK1Q5TCY1 1321 aaPredicted RBP25.65■■□□□ 1.7
GRAMD1A-211ENST00000599564 YTHDC1Q96MU7 727 aaKnown RBP25.59■■□□□ 1.69
GRAMD1A-211ENST00000599564 SCRIBQ14160 1630 aa25.44■■□□□ 1.66
GRAMD1A-211ENST00000599564 ZNF316A6NFI3 1004 aaPredicted RBP25.32■■□□□ 1.64
GRAMD1A-211ENST00000599564 MIER1Q8N108 512 aa25.24■■□□□ 1.63
GRAMD1A-211ENST00000599564 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
GRAMD1A-211ENST00000599564 MROH2BQ7Z745 1585 aa25.03■■□□□ 1.6
GRAMD1A-211ENST00000599564 CEP162Q5TB80 1403 aa25■■□□□ 1.59
GRAMD1A-211ENST00000599564 WRNQ14191 1432 aaPredicted RBP eCLIP24.98■■□□□ 1.599e-6■■■■■ 50.1
GRAMD1A-211ENST00000599564 WIZO95785 1651 aa24.97■■□□□ 1.59
GRAMD1A-211ENST00000599564 HNRNPUL2Q1KMD3 747 aaKnown RBP24.94■■□□□ 1.58
GRAMD1A-211ENST00000599564 CCDC88BA6NC98 1476 aa24.86■■□□□ 1.57
GRAMD1A-211ENST00000599564 UBTFP17480 764 aaKnown RBP24.86■■□□□ 1.57
GRAMD1A-211ENST00000599564 ABCC8Q09428 1581 aa24.85■■□□□ 1.57
GRAMD1A-211ENST00000599564 SOGA1O94964 1423 aa24.8■■□□□ 1.56
GRAMD1A-211ENST00000599564 SUPT16HQ9Y5B9 1047 aaKnown RBP24.78■■□□□ 1.56
GRAMD1A-211ENST00000599564 EIF4G1Q04637 1599 aaKnown RBP24.76■■□□□ 1.55
GRAMD1A-211ENST00000599564 TNIKQ9UKE5 1360 aa24.76■■□□□ 1.55
GRAMD1A-211ENST00000599564 RUSC2Q8N2Y8 1516 aa24.67■■□□□ 1.54
GRAMD1A-211ENST00000599564 CSRNP3Q8WYN3 585 aa24.66■■□□□ 1.54
GRAMD1A-211ENST00000599564 BAZ1AQ9NRL2 1556 aaPredicted RBP24.65■■□□□ 1.54
GRAMD1A-211ENST00000599564 TSHZ2Q9NRE2 1034 aa24.64■■□□□ 1.54
GRAMD1A-211ENST00000599564 NACADO15069 1562 aa24.59■■□□□ 1.53
GRAMD1A-211ENST00000599564 ANP32EQ9BTT0 268 aa24.59■■□□□ 1.53
GRAMD1A-211ENST00000599564 BCL11AQ9H165 835 aa24.52■■□□□ 1.52
GRAMD1A-211ENST00000599564 RANGAP1P46060 587 aaPredicted RBP24.49■■□□□ 1.51
GRAMD1A-211ENST00000599564 GOLGA3Q08378 1498 aa24.47■■□□□ 1.51
GRAMD1A-211ENST00000599564 CLSPNQ9HAW4 1339 aa24.46■■□□□ 1.51
GRAMD1A-211ENST00000599564 BCANQ96GW7 911 aa24.44■■□□□ 1.5
GRAMD1A-211ENST00000599564 APLP2Q06481 763 aa24.39■■□□□ 1.5
GRAMD1A-211ENST00000599564 EEA1Q15075 1411 aa24.39■■□□□ 1.5
GRAMD1A-211ENST00000599564 KCNH8Q96L42 1107 aa24.36■■□□□ 1.49
GRAMD1A-211ENST00000599564 TOP2AP11388 1531 aaKnown RBP24.35■■□□□ 1.49
GRAMD1A-211ENST00000599564 CLIP1P30622 1438 aa24.34■■□□□ 1.49
GRAMD1A-211ENST00000599564 SMARCA2P51531 1590 aa24.34■■□□□ 1.49
GRAMD1A-211ENST00000599564 DHX57Q6P158 1386 aaKnown RBP24.28■■□□□ 1.48
GRAMD1A-211ENST00000599564 VPS8Q8N3P4 1428 aa24.26■■□□□ 1.47
GRAMD1A-211ENST00000599564 FKBP8Q14318 412 aa24.21■■□□□ 1.47
GRAMD1A-211ENST00000599564 CEP164Q9UPV0 1460 aa24.2■■□□□ 1.46
GRAMD1A-211ENST00000599564 SMARCA4P51532 1647 aa24.12■■□□□ 1.45
GRAMD1A-211ENST00000599564 RAPGEF2Q9Y4G8 1499 aa24.09■■□□□ 1.45
GRAMD1A-211ENST00000599564 RBM19Q9Y4C8 960 aaKnown RBP24.08■■□□□ 1.45
GRAMD1A-211ENST00000599564 KIF21BO75037 1637 aa24.07■■□□□ 1.44
GRAMD1A-211ENST00000599564 ITGAEP38570 1179 aa24.06■■□□□ 1.44
GRAMD1A-211ENST00000599564 KANK4Q5T7N3 995 aaPredicted RBP24.04■■□□□ 1.44
GRAMD1A-211ENST00000599564 SYNJ1O43426 1573 aa24.02■■□□□ 1.43
GRAMD1A-211ENST00000599564 DDX10Q13206 875 aaKnown RBP23.97■■□□□ 1.43
GRAMD1A-211ENST00000599564 NEFLP07196 543 aa23.93■■□□□ 1.42
GRAMD1A-211ENST00000599564 TRIM52Q96A61 297 aa23.93■■□□□ 1.42
GRAMD1A-211ENST00000599564 BAZ1BQ9UIG0 1483 aaKnown RBP23.92■■□□□ 1.42
GRAMD1A-211ENST00000599564 MSH5O43196 834 aa23.88■■□□□ 1.41
GRAMD1A-211ENST00000599564 HIRIP3Q9BW71 556 aaPredicted RBP23.86■■□□□ 1.41
GRAMD1A-211ENST00000599564 ARAP1Q96P48 1450 aa23.79■■□□□ 1.4
GRAMD1A-211ENST00000599564 RRBP1Q9P2E9 1410 aaKnown RBP23.77■■□□□ 1.4
GRAMD1A-211ENST00000599564 SIN3AQ96ST3 1273 aa23.76■■□□□ 1.39
GRAMD1A-211ENST00000599564 CCNB3Q8WWL7 1395 aa23.75■■□□□ 1.39
GRAMD1A-211ENST00000599564 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
GRAMD1A-211ENST00000599564 RAB3GAP2Q9H2M9 1393 aa23.74■■□□□ 1.39
GRAMD1A-211ENST00000599564 MAPKBP1O60336 1514 aa23.71■■□□□ 1.39
GRAMD1A-211ENST00000599564 WDR97A6NE52 1622 aa23.7■■□□□ 1.38
GRAMD1A-211ENST00000599564 IRX6P78412 446 aaPredicted RBP23.7■■□□□ 1.38
GRAMD1A-211ENST00000599564 PABPN1Q86U42 306 aaKnown RBP eCLIP23.7■■□□□ 1.381e-6■■□□□ 12.1
GRAMD1A-211ENST00000599564 PPP1R15AO75807 674 aaPredicted RBP23.69■■□□□ 1.38
GRAMD1A-211ENST00000599564 CUX2O14529 1486 aa23.68■■□□□ 1.38
GRAMD1A-211ENST00000599564 ERICH6Q7L0X2 663 aa23.65■■□□□ 1.38
GRAMD1A-211ENST00000599564 ANP32CO43423 234 aa23.64■■□□□ 1.37
GRAMD1A-211ENST00000599564 CCER2I3L3R5 266 aa23.56■■□□□ 1.36
GRAMD1A-211ENST00000599564 CDK11AQ9UQ88 783 aaPredicted RBP23.55■■□□□ 1.36
GRAMD1A-211ENST00000599564 PRXQ9BXM0 1461 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms