RNA–Protein interactions for RNA: ENST00000330137.11

SKA2-201, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA2, Length 2,798 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-201ENST00000330137 NISCHQ9Y2I1 1504 aa15.64■□□□□ 0.09
SKA2-201ENST00000330137 CHIC1Q5VXU3 224 aa14.47□□□□□ -0.09
SKA2-201ENST00000330137 PELP1Q8IZL8 1130 aaKnown RBP14.3□□□□□ -0.12
SKA2-201ENST00000330137 HRCP23327 699 aa14.21□□□□□ -0.13
SKA2-201ENST00000330137 AEBP2Q6ZN18 517 aaPredicted RBP14.21□□□□□ -0.13
SKA2-201ENST00000330137 MYT1Q01538 1121 aa13.94□□□□□ -0.18
SKA2-201ENST00000330137 CCDC180Q9P1Z9 1646 aa13.88□□□□□ -0.19
SKA2-201ENST00000330137 ABCC9O60706 1549 aa13.69□□□□□ -0.22
SKA2-201ENST00000330137 DCAF1Q9Y4B6 1507 aa13.66□□□□□ -0.22
SKA2-201ENST00000330137 PCGF6Q9BYE7 350 aa13.59□□□□□ -0.23
SKA2-201ENST00000330137 ZEB1P37275 1124 aaPredicted RBP13.53□□□□□ -0.24
SKA2-201ENST00000330137 MYO15BQ96JP2 1530 aa13.53□□□□□ -0.24
SKA2-201ENST00000330137 PPARGC1BQ86YN6 1023 aaKnown RBP13.52□□□□□ -0.24
SKA2-201ENST00000330137 TRIM26Q12899 539 aaPredicted RBP13.39□□□□□ -0.27
SKA2-201ENST00000330137 SCAF1Q9H7N4 1312 aaKnown RBP13.39□□□□□ -0.27
SKA2-201ENST00000330137 SUPT5HO00267 1087 aaKnown RBP13.37□□□□□ -0.27
SKA2-201ENST00000330137 DCAF8L2P0C7V8 631 aa13.3□□□□□ -0.28
SKA2-201ENST00000330137 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
SKA2-201ENST00000330137 ZCCHC6Q5VYS8 1495 aaKnown RBP13.24□□□□□ -0.29
SKA2-201ENST00000330137 TTBK1Q5TCY1 1321 aaPredicted RBP13.22□□□□□ -0.29
SKA2-201ENST00000330137 ACIN1Q9UKV3 1341 aaKnown RBP13.15□□□□□ -0.3
SKA2-201ENST00000330137 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
SKA2-201ENST00000330137 NACADO15069 1562 aa13.06□□□□□ -0.32
SKA2-201ENST00000330137 CENPBP07199 599 aaPredicted RBP13.04□□□□□ -0.32
SKA2-201ENST00000330137 PHF23Q9BUL5 403 aaPredicted RBP13.03□□□□□ -0.32
SKA2-201ENST00000330137 NEUROD1Q13562 356 aa12.95□□□□□ -0.34
SKA2-201ENST00000330137 LOC105371045A0A1W2PR82 267 aa12.94□□□□□ -0.34
SKA2-201ENST00000330137 GTF3C3Q9Y5Q9 886 aa12.91□□□□□ -0.34
SKA2-201ENST00000330137 PABPN1Q86U42 306 aaKnown RBP eCLIP12.82□□□□□ -0.36
SKA2-201ENST00000330137 UNC13AQ9UPW8 1703 aa12.81□□□□□ -0.36
SKA2-201ENST00000330137 SCRIBQ14160 1630 aa12.77□□□□□ -0.36
SKA2-201ENST00000330137 DIEXFQ68CQ4 756 aaKnown RBP12.77□□□□□ -0.37
SKA2-201ENST00000330137 CLSPNQ9HAW4 1339 aa12.75□□□□□ -0.37
SKA2-201ENST00000330137 TRIM41Q8WV44 630 aa12.68□□□□□ -0.38
SKA2-201ENST00000330137 BICRAQ9NZM4 1560 aa12.66□□□□□ -0.38
SKA2-201ENST00000330137 CCER1Q8TC90 406 aaPredicted RBP12.61□□□□□ -0.39
SKA2-201ENST00000330137 ZNF316A6NFI3 1004 aaPredicted RBP12.56□□□□□ -0.4
SKA2-201ENST00000330137 ANP32EQ9BTT0 268 aa12.54□□□□□ -0.4
SKA2-201ENST00000330137 BCL11AQ9H165 835 aa12.52□□□□□ -0.41
SKA2-201ENST00000330137 DNAJC5BQ9UF47 199 aa12.51□□□□□ -0.41
SKA2-201ENST00000330137 WRNQ14191 1432 aaPredicted RBP eCLIP12.51□□□□□ -0.41
SKA2-201ENST00000330137 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.5□□□□□ -0.41
SKA2-201ENST00000330137 RSF1Q96T23 1441 aaPredicted RBP12.43□□□□□ -0.42
SKA2-201ENST00000330137 EIF4G1Q04637 1599 aaKnown RBP12.37□□□□□ -0.43
SKA2-201ENST00000330137 FAM9AQ8IZU1 332 aaPredicted RBP12.34□□□□□ -0.43
SKA2-201ENST00000330137 CC2D2AQ9P2K1 1620 aa12.34□□□□□ -0.43
SKA2-201ENST00000330137 MIER1Q8N108 512 aa12.34□□□□□ -0.43
SKA2-201ENST00000330137 SUPT16HQ9Y5B9 1047 aaKnown RBP12.33□□□□□ -0.44
SKA2-201ENST00000330137 TSHZ2Q9NRE2 1034 aa12.32□□□□□ -0.44
SKA2-201ENST00000330137 YTHDC1Q96MU7 727 aaKnown RBP12.3□□□□□ -0.44
SKA2-201ENST00000330137 CECR2Q9BXF3 1484 aa12.27□□□□□ -0.44
SKA2-201ENST00000330137 ERICH6Q7L0X2 663 aa12.24□□□□□ -0.45
SKA2-201ENST00000330137 CSRNP3Q8WYN3 585 aa12.22□□□□□ -0.45
SKA2-201ENST00000330137 TNIKQ9UKE5 1360 aa12.21□□□□□ -0.46
SKA2-201ENST00000330137 MYT1LQ9UL68 1186 aa12.2□□□□□ -0.46
SKA2-201ENST00000330137 EEA1Q15075 1411 aa12.18□□□□□ -0.46
SKA2-201ENST00000330137 CEP162Q5TB80 1403 aa12.18□□□□□ -0.46
SKA2-201ENST00000330137 SMARCA4P51532 1647 aa12.15□□□□□ -0.46
SKA2-201ENST00000330137 BAZ1AQ9NRL2 1556 aaPredicted RBP12.14□□□□□ -0.47
SKA2-201ENST00000330137 PRKCSHP14314 528 aaPredicted RBP12.12□□□□□ -0.47
SKA2-201ENST00000330137 EHMT2Q96KQ7 1210 aa12.12□□□□□ -0.47
SKA2-201ENST00000330137 MROH2BQ7Z745 1585 aa12.07□□□□□ -0.48
SKA2-201ENST00000330137 SMARCA2P51531 1590 aa12.07□□□□□ -0.48
SKA2-201ENST00000330137 ATAD2BQ9ULI0 1458 aa12.07□□□□□ -0.48
SKA2-201ENST00000330137 PLPPR3Q6T4P5 718 aa12.07□□□□□ -0.48
SKA2-201ENST00000330137 NCAPD3P42695 1498 aa12.03□□□□□ -0.48
SKA2-201ENST00000330137 FANCIQ9NVI1 1328 aa12.03□□□□□ -0.48
SKA2-201ENST00000330137 RBM19Q9Y4C8 960 aaKnown RBP12.02□□□□□ -0.48
SKA2-201ENST00000330137 BAZ1BQ9UIG0 1483 aaKnown RBP12.02□□□□□ -0.48
SKA2-201ENST00000330137 GOLGA3Q08378 1498 aa12□□□□□ -0.49
SKA2-201ENST00000330137 APLP2Q06481 763 aa11.99□□□□□ -0.49
SKA2-201ENST00000330137 WIZO95785 1651 aa11.98□□□□□ -0.49
SKA2-201ENST00000330137 HMGXB3Q12766 1538 aa11.98□□□□□ -0.49
SKA2-201ENST00000330137 PEG3Q9GZU2 1588 aa11.96□□□□□ -0.5
SKA2-201ENST00000330137 KIF21BO75037 1637 aa11.93□□□□□ -0.5
SKA2-201ENST00000330137 NEFLP07196 543 aa11.93□□□□□ -0.5
SKA2-201ENST00000330137 ERICH6BQ5W0A0 696 aa11.92□□□□□ -0.5
SKA2-201ENST00000330137 DHX57Q6P158 1386 aaKnown RBP11.92□□□□□ -0.5
SKA2-201ENST00000330137 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
SKA2-201ENST00000330137 VPS8Q8N3P4 1428 aa11.91□□□□□ -0.5
SKA2-201ENST00000330137 CUX2O14529 1486 aa11.9□□□□□ -0.5
SKA2-201ENST00000330137 CEP164Q9UPV0 1460 aa11.89□□□□□ -0.51
SKA2-201ENST00000330137 FKBP8Q14318 412 aa11.89□□□□□ -0.51
SKA2-201ENST00000330137 ABCC8Q09428 1581 aa11.88□□□□□ -0.51
SKA2-201ENST00000330137 TOP2AP11388 1531 aaKnown RBP11.87□□□□□ -0.51
SKA2-201ENST00000330137 HNRNPUL2Q1KMD3 747 aaKnown RBP11.86□□□□□ -0.51
SKA2-201ENST00000330137 MSH5O43196 834 aa11.85□□□□□ -0.51
SKA2-201ENST00000330137 CCER2I3L3R5 266 aa11.85□□□□□ -0.51
SKA2-201ENST00000330137 SOGA1O94964 1423 aa11.85□□□□□ -0.51
SKA2-201ENST00000330137 CLIP1P30622 1438 aa11.84□□□□□ -0.51
SKA2-201ENST00000330137 ERCC6Q03468 1493 aa11.83□□□□□ -0.52
SKA2-201ENST00000330137 NESP48681 1621 aa11.82□□□□□ -0.52
SKA2-201ENST00000330137 UBTFP17480 764 aaKnown RBP11.82□□□□□ -0.52
SKA2-201ENST00000330137 CDK11AQ9UQ88 783 aaPredicted RBP11.79□□□□□ -0.52
SKA2-201ENST00000330137 RRBP1Q9P2E9 1410 aaKnown RBP11.78□□□□□ -0.52
SKA2-201ENST00000330137 DEKP35659 375 aaKnown RBP11.77□□□□□ -0.53
SKA2-201ENST00000330137 TIMELESSQ9UNS1 1208 aa11.77□□□□□ -0.53
SKA2-201ENST00000330137 BCANQ96GW7 911 aa11.76□□□□□ -0.53
SKA2-201ENST00000330137 SENP3Q9H4L4 574 aaPredicted RBP11.76□□□□□ -0.53
SKA2-201ENST00000330137 LAMC3Q9Y6N6 1575 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms