RNA–Protein interactions for RNA: ENST00000508531.1

PDLIM5-211, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4

Gene PDLIM5, Length 480 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-211ENST00000508531 AEBP2Q6ZN18 517 aaPredicted RBP26.44■■□□□ 1.82
PDLIM5-211ENST00000508531 CHIC1Q5VXU3 224 aa25.31■■□□□ 1.64
PDLIM5-211ENST00000508531 SENP3Q9H4L4 574 aaPredicted RBP22.48■■□□□ 1.19
PDLIM5-211ENST00000508531 PHF23Q9BUL5 403 aaPredicted RBP22.25■■□□□ 1.15
PDLIM5-211ENST00000508531 FOXD1Q16676 465 aa20.95■□□□□ 0.94
PDLIM5-211ENST00000508531 PLPPR3Q6T4P5 718 aa20.33■□□□□ 0.85
PDLIM5-211ENST00000508531 PPP6R1Q9UPN7 881 aa19.78■□□□□ 0.76
PDLIM5-211ENST00000508531 ADRA2BP18089 450 aa19.75■□□□□ 0.75
PDLIM5-211ENST00000508531 PIAS4Q8N2W9 510 aaPredicted RBP19.65■□□□□ 0.74
PDLIM5-211ENST00000508531 MSH5O43196 834 aa19.5■□□□□ 0.71
PDLIM5-211ENST00000508531 POTEDQ86YR6 584 aa18.66■□□□□ 0.58
PDLIM5-211ENST00000508531 MAPK8IP2Q13387 824 aaPredicted RBP18.08■□□□□ 0.48
PDLIM5-211ENST00000508531 SCAF1Q9H7N4 1312 aaKnown RBP18.01■□□□□ 0.47
PDLIM5-211ENST00000508531 PPP4R3CPQ6ZMV5 832 aa17.87■□□□□ 0.45
PDLIM5-211ENST00000508531 DMRT2Q9Y5R5 561 aa17.87■□□□□ 0.45
PDLIM5-211ENST00000508531 CNKSR2Q8WXI2 1034 aa17.46■□□□□ 0.39
PDLIM5-211ENST00000508531 HOXD11P31277 338 aaPredicted RBP17.29■□□□□ 0.36
PDLIM5-211ENST00000508531 RNF216Q9NWF9 866 aaPredicted RBP17.24■□□□□ 0.35
PDLIM5-211ENST00000508531 NCBP3Q53F19 620 aaKnown RBP17.23■□□□□ 0.35
PDLIM5-211ENST00000508531 DCAF8L1A6NGE4 600 aa17.19■□□□□ 0.34
PDLIM5-211ENST00000508531 NPM3O75607 178 aaKnown RBP17■□□□□ 0.31
PDLIM5-211ENST00000508531 KCNA4P22459 653 aa16.89■□□□□ 0.29
PDLIM5-211ENST00000508531 RNF39Q9H2S5 420 aa16.66■□□□□ 0.26
PDLIM5-211ENST00000508531 CACNB1Q02641 598 aaPredicted RBP16.62■□□□□ 0.25
PDLIM5-211ENST00000508531 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
PDLIM5-211ENST00000508531 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.52■□□□□ 0.24
PDLIM5-211ENST00000508531 C1QBPQ07021 282 aaKnown RBP16.41■□□□□ 0.22
PDLIM5-211ENST00000508531 U3KPZ7 1027 aaPredicted RBP16.19■□□□□ 0.18
PDLIM5-211ENST00000508531 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
PDLIM5-211ENST00000508531 SLC4A1APQ9BWU0 796 aaKnown RBP15.99■□□□□ 0.15
PDLIM5-211ENST00000508531 SPINK5Q9NQ38 1064 aaPredicted RBP15.91■□□□□ 0.14
PDLIM5-211ENST00000508531 CAPN15O75808 1086 aa15.87■□□□□ 0.13
PDLIM5-211ENST00000508531 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.77■□□□□ 0.12
PDLIM5-211ENST00000508531 HNRNPUL2Q1KMD3 747 aaKnown RBP15.77■□□□□ 0.12
PDLIM5-211ENST00000508531 APLP2Q06481 763 aa15.73■□□□□ 0.11
PDLIM5-211ENST00000508531 MYCNP04198 464 aaPredicted RBP15.71■□□□□ 0.11
PDLIM5-211ENST00000508531 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
PDLIM5-211ENST00000508531 DSG3P32926 999 aa15.69■□□□□ 0.1
PDLIM5-211ENST00000508531 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
PDLIM5-211ENST00000508531 FOXD4L1Q9NU39 408 aa15.68■□□□□ 0.1
PDLIM5-211ENST00000508531 ZNF219Q9P2Y4 722 aaPredicted RBP15.61■□□□□ 0.09
PDLIM5-211ENST00000508531 ZBTB22O15209 634 aa15.54■□□□□ 0.08
PDLIM5-211ENST00000508531 ABCB7O75027 752 aa15.54■□□□□ 0.08
PDLIM5-211ENST00000508531 ATF5Q9Y2D1 282 aaPredicted RBP15.37■□□□□ 0.05
PDLIM5-211ENST00000508531 POLA2Q14181 598 aa15.28■□□□□ 0.04
PDLIM5-211ENST00000508531 ATXN8OSP0DMR3 200 aa15.14■□□□□ 0.01
PDLIM5-211ENST00000508531 CSRNP3Q8WYN3 585 aa15.02■□□□□ -0
PDLIM5-211ENST00000508531 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
PDLIM5-211ENST00000508531 ZBTB12Q9Y330 459 aaPredicted RBP14.96□□□□□ -0.01
PDLIM5-211ENST00000508531 RBM42Q9BTD8 480 aaKnown RBP14.95□□□□□ -0.02
PDLIM5-211ENST00000508531 OSCARQ8IYS5 282 aa14.81□□□□□ -0.04
PDLIM5-211ENST00000508531 FBLN2P98095 1184 aa14.72□□□□□ -0.05
PDLIM5-211ENST00000508531 POTEHQ6S545 545 aa14.67□□□□□ -0.06
PDLIM5-211ENST00000508531 AKT1S1Q96B36 256 aa14.66□□□□□ -0.06
PDLIM5-211ENST00000508531 MKRN4PQ13434 485 aaPredicted RBP14.65□□□□□ -0.06
PDLIM5-211ENST00000508531 CHRDL2Q6WN34 429 aa14.54□□□□□ -0.08
PDLIM5-211ENST00000508531 REM2Q8IYK8 340 aaPredicted RBP14.54□□□□□ -0.08
PDLIM5-211ENST00000508531 SPDYE2BA6NHP3 402 aa14.53□□□□□ -0.08
PDLIM5-211ENST00000508531 SPDYE6P0CI01 402 aa14.53□□□□□ -0.08
PDLIM5-211ENST00000508531 SPDYE2Q495Y8 402 aa14.53□□□□□ -0.08
PDLIM5-211ENST00000508531 ZNF692Q9BU19 519 aaPredicted RBP14.42□□□□□ -0.1
PDLIM5-211ENST00000508531 PITPNM1O00562 1244 aa14.39□□□□□ -0.11
PDLIM5-211ENST00000508531 SSUH2Q9Y2M2 353 aa14.36□□□□□ -0.11
PDLIM5-211ENST00000508531 PIP4P2Q8N4L2 257 aa14.27□□□□□ -0.13
PDLIM5-211ENST00000508531 CLEC11AQ9Y240 323 aa14.24□□□□□ -0.13
PDLIM5-211ENST00000508531 PABPN1Q86U42 306 aaKnown RBP eCLIP14.22□□□□□ -0.13
PDLIM5-211ENST00000508531 SPDYE1Q8NFV5 336 aaPredicted RBP14.22□□□□□ -0.13
PDLIM5-211ENST00000508531 FXR2P51116 673 aaKnown RBP eCLIP14.2□□□□□ -0.14
PDLIM5-211ENST00000508531 SPDYE4A6NLX3 237 aa14.08□□□□□ -0.16
PDLIM5-211ENST00000508531 PRKAR2AP13861 404 aaKnown RBP14.03□□□□□ -0.16
PDLIM5-211ENST00000508531 PRR29P0C7W0 189 aa14.01□□□□□ -0.17
PDLIM5-211ENST00000508531 HAX1O00165 279 aa13.95□□□□□ -0.18
PDLIM5-211ENST00000508531 CHADLQ6NUI6 762 aa13.95□□□□□ -0.18
PDLIM5-211ENST00000508531 SP7Q8TDD2 431 aaPredicted RBP13.86□□□□□ -0.19
PDLIM5-211ENST00000508531 STAG3Q9UJ98 1225 aa13.84□□□□□ -0.19
PDLIM5-211ENST00000508531 EVX2Q03828 476 aa13.8□□□□□ -0.2
PDLIM5-211ENST00000508531 C19orf67A6NJJ6 358 aa13.74□□□□□ -0.21
PDLIM5-211ENST00000508531 PROM2Q8N271 834 aa13.74□□□□□ -0.21
PDLIM5-211ENST00000508531 CREBZFQ9NS37 354 aa13.72□□□□□ -0.21
PDLIM5-211ENST00000508531 FARP1Q9Y4F1 1045 aaPredicted RBP13.72□□□□□ -0.21
PDLIM5-211ENST00000508531 FKBP8Q14318 412 aa13.64□□□□□ -0.23
PDLIM5-211ENST00000508531 CD44P16070 742 aaKnown RBP13.6□□□□□ -0.23
PDLIM5-211ENST00000508531 GABBR2O75899 941 aa13.49□□□□□ -0.25
PDLIM5-211ENST00000508531 MNX1P50219 401 aaPredicted RBP13.49□□□□□ -0.25
PDLIM5-211ENST00000508531 NPM1P06748 294 aaKnown RBP eCLIP13.46□□□□□ -0.25
PDLIM5-211ENST00000508531 ZRANB1Q9UGI0 708 aa13.45□□□□□ -0.26
PDLIM5-211ENST00000508531 MIER1Q8N108 512 aa13.41□□□□□ -0.26
PDLIM5-211ENST00000508531 PAK3O75914 559 aaPredicted RBP13.37□□□□□ -0.27
PDLIM5-211ENST00000508531 ZNF579Q8NAF0 562 aaKnown RBP13.37□□□□□ -0.27
PDLIM5-211ENST00000508531 PLEKHG5O94827 1062 aa13.36□□□□□ -0.27
PDLIM5-211ENST00000508531 PLCD3Q8N3E9 789 aa13.34□□□□□ -0.27
PDLIM5-211ENST00000508531 CLCN6P51797 869 aa13.29□□□□□ -0.28
PDLIM5-211ENST00000508531 PHF12Q96QT6 1004 aa13.29□□□□□ -0.28
PDLIM5-211ENST00000508531 TSPYL2Q9H2G4 693 aaPredicted RBP13.26□□□□□ -0.29
PDLIM5-211ENST00000508531 GALR2O43603 387 aaPredicted RBP13.23□□□□□ -0.29
PDLIM5-211ENST00000508531 FBXO3Q9UK99 471 aa13.23□□□□□ -0.29
PDLIM5-211ENST00000508531 POTEIP0CG38 1075 aa13.21□□□□□ -0.29
PDLIM5-211ENST00000508531 RASEFQ8IZ41 740 aa13.18□□□□□ -0.3
PDLIM5-211ENST00000508531 DCBLD2Q96PD2 775 aa13.18□□□□□ -0.3
PDLIM5-211ENST00000508531 ZBTB47Q9UFB7 747 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms