Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.171e-8■■■■□ 21
DDX55Q8NHQ9 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.041e-8■■■■□ 21
DDX55Q8NHQ9 LAMB2-205ENST00000467506 689 ntTSL 216.26■□□□□ 0.199e-7■■■■□ 21
DDX55Q8NHQ9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.41■■□□□ 1.024e-19■■■■□ 21
DDX55Q8NHQ9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.18■□□□□ 0.824e-19■■■■□ 21
DDX55Q8NHQ9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.74e-19■■■■□ 21
DDX55Q8NHQ9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.554e-19■■■■□ 21
DDX55Q8NHQ9 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.2■□□□□ 0.344e-19■■■■□ 21
DDX55Q8NHQ9 RNPS1-206ENST00000562205 2223 ntTSL 216.74■□□□□ 0.274e-19■■■■□ 21
DDX55Q8NHQ9 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.134e-19■■■■□ 21
DDX55Q8NHQ9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.72■■□□□ 1.876e-8■■■■□ 21
DDX55Q8NHQ9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.72■■□□□ 1.876e-8■■■■□ 21
DDX55Q8NHQ9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.226e-8■■■■□ 21
DDX55Q8NHQ9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.26e-8■■■■□ 21
DDX55Q8NHQ9 TRMT112-204ENST00000537918 559 ntTSL 1 (best)23.11■■□□□ 1.291e-10■■■■□ 21
DDX55Q8NHQ9 ERH-201ENST00000216520 668 ntTSL 318.67■□□□□ 0.586e-17■■■■□ 20.9
DDX55Q8NHQ9 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.526e-17■■■■□ 20.9
DDX55Q8NHQ9 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.112e-6■■■■□ 20.9
DDX55Q8NHQ9 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.112e-9■■■■□ 20.9
DDX55Q8NHQ9 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC8.72□□□□□ -1.016e-14■■■■□ 20.8
DDX55Q8NHQ9 TAF15-201ENST00000603067 580 ntTSL 57.44□□□□□ -1.226e-14■■■■□ 20.8
DDX55Q8NHQ9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.325e-8■■■■□ 20.8
DDX55Q8NHQ9 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.99■□□□□ 0.315e-8■■■■□ 20.8
DDX55Q8NHQ9 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.56■□□□□ 0.085e-8■■■■□ 20.8
DDX55Q8NHQ9 INPPL1-203ENST00000535985 353 ntTSL 214.7□□□□□ -0.065e-8■■■■□ 20.8
DDX55Q8NHQ9 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC15.35■□□□□ 0.054e-7■■■■□ 20.8
DDX55Q8NHQ9 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.028e-17■■■■□ 20.8
DDX55Q8NHQ9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.68■■□□□ 1.863e-15■■■■□ 20.8
DDX55Q8NHQ9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.553e-15■■■■□ 20.8
DDX55Q8NHQ9 PRC1-201ENST00000361188 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.452e-6■■■■□ 20.7
DDX55Q8NHQ9 PRC1-202ENST00000394249 3034 ntTSL 1 (best) BASIC11.59□□□□□ -0.552e-6■■■■□ 20.7
DDX55Q8NHQ9 PRC1-210ENST00000556972 728 ntTSL 57.16□□□□□ -1.262e-6■■■■□ 20.7
DDX55Q8NHQ9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.02■■□□□ 1.766e-7■■■■□ 20.7
DDX55Q8NHQ9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.835e-7■■■■□ 20.7
DDX55Q8NHQ9 CBX4-203ENST00000494546 432 ntTSL 340.79■■■■■ 4.125e-8■■■■□ 20.7
DDX55Q8NHQ9 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC35.3■■■■□ 3.245e-8■■■■□ 20.7
DDX55Q8NHQ9 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.445e-8■■■■□ 20.7
DDX55Q8NHQ9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.245e-8■■■■□ 20.7
DDX55Q8NHQ9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.71■■■□□ 2.195e-8■■■■□ 20.7
DDX55Q8NHQ9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27.56■■■□□ 25e-8■■■■□ 20.7
DDX55Q8NHQ9 EHBP1L1-203ENST00000527214 543 ntTSL 225.15■■□□□ 1.625e-8■■■■□ 20.7
DDX55Q8NHQ9 EHBP1L1-206ENST00000529596 799 ntTSL 524.9■■□□□ 1.585e-8■■■■□ 20.7
DDX55Q8NHQ9 EHBP1L1-204ENST00000529056 461 ntTSL 224.34■■□□□ 1.495e-8■■■■□ 20.7
DDX55Q8NHQ9 EHBP1L1-209ENST00000533364 769 ntTSL 223.96■■□□□ 1.435e-8■■■■□ 20.7
DDX55Q8NHQ9 STXBP2-209ENST00000595861 430 ntTSL 223.84■■□□□ 1.413e-6■■■■□ 20.7
DDX55Q8NHQ9 ASIC3-205ENST00000468325 1668 ntTSL 1 (best)23.54■■□□□ 1.365e-8■■■■□ 20.7
DDX55Q8NHQ9 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.8■■□□□ 1.083e-7■■■■□ 20.7
DDX55Q8NHQ9 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.52■□□□□ 0.885e-8■■■■□ 20.7
DDX55Q8NHQ9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.845e-8■■■■□ 20.7
DDX55Q8NHQ9 ASIC3-204ENST00000377904 2096 ntTSL 218.96■□□□□ 0.635e-8■■■■□ 20.7
DDX55Q8NHQ9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.48■□□□□ 0.555e-8■■■■□ 20.7
DDX55Q8NHQ9 PPIE-215ENST00000497370 913 ntTSL 59.03□□□□□ -0.963e-7■■■■□ 20.7
DDX55Q8NHQ9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.292e-8■■■■□ 20.6
DDX55Q8NHQ9 AUP1-204ENST00000463900 1645 ntTSL 1 (best)20.89■□□□□ 0.942e-8■■■■□ 20.6
DDX55Q8NHQ9 AUP1-202ENST00000425118 1581 ntTSL 1 (best)20.5■□□□□ 0.872e-8■■■■□ 20.6
DDX55Q8NHQ9 AUP1-206ENST00000466894 1658 ntTSL 519.62■□□□□ 0.732e-8■■■■□ 20.6
DDX55Q8NHQ9 AUP1-208ENST00000486234 984 ntTSL 515.63■□□□□ 0.092e-8■■■■□ 20.6
DDX55Q8NHQ9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.96■■□□□ 1.914e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.34■■□□□ 1.814e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC26.14■■□□□ 1.784e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.734e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC24.22■■□□□ 1.474e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC24.06■■□□□ 1.444e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.97■■□□□ 1.114e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.924e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.74e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.43■□□□□ 0.544e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-215ENST00000596822 823 ntTSL 3 BASIC17.58■□□□□ 0.44e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC17.19■□□□□ 0.344e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-212ENST00000596756 931 ntTSL 517■□□□□ 0.314e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-219ENST00000597636 2874 ntTSL 516.23■□□□□ 0.194e-6■■■■□ 20.6
DDX55Q8NHQ9 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC15.99■□□□□ 0.154e-6■■■■□ 20.6
DDX55Q8NHQ9 SART3-201ENST00000228284 4004 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.695e-21■■■■□ 20.6
DDX55Q8NHQ9 SART3-204ENST00000546728 3637 ntTSL 1 (best)9□□□□□ -0.975e-21■■■■□ 20.6
DDX55Q8NHQ9 HELLS-203ENST00000371327 4987 ntTSL 24.17□□□□□ -1.741e-6■■■■□ 20.5
DDX55Q8NHQ9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.797e-17■■■■□ 20.5
DDX55Q8NHQ9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.637e-17■■■■□ 20.5
DDX55Q8NHQ9 SLC39A7-204ENST00000463972 1410 ntTSL 215.21■□□□□ 0.037e-17■■■■□ 20.5
DDX55Q8NHQ9 RAD21-201ENST00000297338 3749 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.782e-13■■■■□ 20.5
DDX55Q8NHQ9 GRAMD1A-212ENST00000600231 2534 ntTSL 223.51■■□□□ 1.353e-6■■■■□ 20.5
DDX55Q8NHQ9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.293e-6■■■■□ 20.5
DDX55Q8NHQ9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.413e-6■■■■□ 20.5
DDX55Q8NHQ9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.56■□□□□ 0.43e-6■■■■□ 20.5
DDX55Q8NHQ9 LSM7-205ENST00000589532 539 ntTSL 329.7■■■□□ 2.352e-14■■■■□ 20.5
DDX55Q8NHQ9 LSM7-206ENST00000591515 710 ntTSL 228.52■■■□□ 2.162e-14■■■■□ 20.5
DDX55Q8NHQ9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.564e-7■■■■□ 20.4
DDX55Q8NHQ9 NDFIP1-202ENST00000503388 4164 ntTSL 25.24□□□□□ -1.574e-7■■■■□ 20.4
DDX55Q8NHQ9 ETV5-201ENST00000306376 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.171e-7■■■■□ 20.4
DDX55Q8NHQ9 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.177e-10■■■■□ 20.4
DDX55Q8NHQ9 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.483e-36■■■■□ 20.4
DDX55Q8NHQ9 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.323e-36■■■■□ 20.4
DDX55Q8NHQ9 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC16.61■□□□□ 0.253e-36■■■■□ 20.4
DDX55Q8NHQ9 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.12■□□□□ 0.173e-36■■■■□ 20.4
DDX55Q8NHQ9 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.173e-36■■■■□ 20.4
DDX55Q8NHQ9 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.123e-36■■■■□ 20.4
DDX55Q8NHQ9 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC15.12■□□□□ 0.013e-36■■■■□ 20.4
DDX55Q8NHQ9 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.322e-6■■■■□ 20.4
DDX55Q8NHQ9 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.282e-6■■■■□ 20.4
DDX55Q8NHQ9 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.152e-6■■■■□ 20.4
DDX55Q8NHQ9 TNFAIP3-206ENST00000612899 4735 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.268e-12■■■■□ 20.4
Retrieved 100 of 15,504 protein–RNA pairs in 105.1 ms