RNA–Protein interactions for RNA: ENST00000591515.6

LSM7-206, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM7, Length 710 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-206ENST00000591515 NISCHQ9Y2I1 1504 aa57.35■■■■■ 6.77
LSM7-206ENST00000591515 ABCC9O60706 1549 aa52.53■■■■■ 6
LSM7-206ENST00000591515 CCDC180Q9P1Z9 1646 aa51.89■■■■■ 5.9
LSM7-206ENST00000591515 DNAJC5BQ9UF47 199 aa49.92■■■■■ 5.58
LSM7-206ENST00000591515 RB1CC1Q8TDY2 1594 aa49.68■■■■■ 5.54
LSM7-206ENST00000591515 NACADO15069 1562 aa49.15■■■■■ 5.46
LSM7-206ENST00000591515 UNC13AQ9UPW8 1703 aa48.75■■■■■ 5.39
LSM7-206ENST00000591515 PABPN1Q86U42 306 aaKnown RBP eCLIP48.71■■■■■ 5.39
LSM7-206ENST00000591515 DCAF8L2P0C7V8 631 aa48.57■■■■■ 5.37
LSM7-206ENST00000591515 BICRAQ9NZM4 1560 aa48.34■■■■■ 5.33
LSM7-206ENST00000591515 MYO15BQ96JP2 1530 aa48.21■■■■■ 5.31
LSM7-206ENST00000591515 SHROOM4Q9ULL8 1493 aa47.52■■■■■ 5.2
LSM7-206ENST00000591515 CC2D2AQ9P2K1 1620 aa47.47■■■■■ 5.19
LSM7-206ENST00000591515 ZCCHC6Q5VYS8 1495 aaKnown RBP47.4■■■■■ 5.18
LSM7-206ENST00000591515 CECR2Q9BXF3 1484 aa47.38■■■■■ 5.17
LSM7-206ENST00000591515 DCAF1Q9Y4B6 1507 aa47.32■■■■■ 5.17
LSM7-206ENST00000591515 SCRIBQ14160 1630 aa47.2■■■■■ 5.15
LSM7-206ENST00000591515 EIF4G1Q04637 1599 aaKnown RBP47.17■■■■■ 5.14
LSM7-206ENST00000591515 DNAJC5Q9H3Z4 198 aa46.35■■■■■ 5.01
LSM7-206ENST00000591515 CUX2O14529 1486 aa45.57■■■■■ 4.89
LSM7-206ENST00000591515 ERCC6Q03468 1493 aa45.36■■■■■ 4.85
LSM7-206ENST00000591515 NCAPD3P42695 1498 aa45.35■■■■■ 4.85
LSM7-206ENST00000591515 ATAD2BQ9ULI0 1458 aa45.12■■■■■ 4.81
LSM7-206ENST00000591515 HMGXB3Q12766 1538 aa45.01■■■■■ 4.8
LSM7-206ENST00000591515 SMARCA2P51531 1590 aa44.96■■■■■ 4.79
LSM7-206ENST00000591515 SMARCA4P51532 1647 aa44.95■■■■■ 4.79
LSM7-206ENST00000591515 NESP48681 1621 aa44.94■■■■■ 4.79
LSM7-206ENST00000591515 THOC2Q8NI27 1593 aaKnown RBP44.71■■■■■ 4.75
LSM7-206ENST00000591515 BAZ1BQ9UIG0 1483 aaKnown RBP44.64■■■■■ 4.74
LSM7-206ENST00000591515 BAZ1AQ9NRL2 1556 aaPredicted RBP44.56■■■■■ 4.72
LSM7-206ENST00000591515 PEG3Q9GZU2 1588 aa44.52■■■■■ 4.72
LSM7-206ENST00000591515 LAMC3Q9Y6N6 1575 aa44.49■■■■■ 4.71
LSM7-206ENST00000591515 KIF21AQ7Z4S6 1674 aa44.44■■■■■ 4.7
LSM7-206ENST00000591515 MROH2BQ7Z745 1585 aa44.21■■■■■ 4.67
LSM7-206ENST00000591515 PDS5BQ9NTI5 1447 aa44.17■■■■■ 4.66
LSM7-206ENST00000591515 TRIM41Q8WV44 630 aa43.99■■■■■ 4.63
LSM7-206ENST00000591515 MRC2Q9UBG0 1479 aa43.9■■■■■ 4.62
LSM7-206ENST00000591515 CADPSQ9ULU8 1353 aa43.9■■■■■ 4.62
LSM7-206ENST00000591515 WDR62O43379 1518 aa43.87■■■■■ 4.61
LSM7-206ENST00000591515 WIZO95785 1651 aa43.68■■■■■ 4.58
LSM7-206ENST00000591515 CEP164Q9UPV0 1460 aa43.57■■■■■ 4.57
LSM7-206ENST00000591515 FANCD2Q9BXW9 1451 aa43.45■■■■■ 4.55
LSM7-206ENST00000591515 CFTRP13569 1480 aa43.29■■■■■ 4.52
LSM7-206ENST00000591515 OSCARQ8IYS5 282 aa43.25■■■■■ 4.51
LSM7-206ENST00000591515 URB2Q14146 1524 aaKnown RBP43.18■■■■■ 4.5
LSM7-206ENST00000591515 TOP2AP11388 1531 aaKnown RBP43.04■■■■■ 4.48
LSM7-206ENST00000591515 PRDM2Q13029 1718 aa42.98■■■■■ 4.47
LSM7-206ENST00000591515 RIMBP3CA6NJZ7 1639 aa42.97■■■■■ 4.47
LSM7-206ENST00000591515 RIMBP3BA6NNM3 1639 aa42.97■■■■■ 4.47
LSM7-206ENST00000591515 RIMBP3Q9UFD9 1639 aa42.97■■■■■ 4.47
LSM7-206ENST00000591515 RSF1Q96T23 1441 aaPredicted RBP42.96■■■■■ 4.47
LSM7-206ENST00000591515 ZNF608Q9ULD9 1512 aaPredicted RBP42.77■■■■■ 4.44
LSM7-206ENST00000591515 ARHGEF11O15085 1522 aa42.71■■■■■ 4.43
LSM7-206ENST00000591515 IFT140Q96RY7 1462 aa42.71■■■■■ 4.43
LSM7-206ENST00000591515 TOPBP1Q92547 1522 aa42.57■■■■■ 4.41
LSM7-206ENST00000591515 EIF4G3O43432 1585 aaKnown RBP42.56■■■■■ 4.4
LSM7-206ENST00000591515 CCDC88BA6NC98 1476 aa42.51■■■■■ 4.4
LSM7-206ENST00000591515 CHD1O14646 1710 aa42.44■■■■■ 4.38
LSM7-206ENST00000591515 DNMBPQ6XZF7 1577 aa42.37■■■■■ 4.37
LSM7-206ENST00000591515 ABCC8Q09428 1581 aa42.35■■■■■ 4.37
LSM7-206ENST00000591515 CYB5RLQ6IPT4 315 aa42.32■■■■■ 4.37
LSM7-206ENST00000591515 TARBP1Q13395 1621 aaKnown RBP42.31■■■■■ 4.36
LSM7-206ENST00000591515 ARAP1Q96P48 1450 aa42.25■■■■■ 4.35
LSM7-206ENST00000591515 AQRO60306 1485 aaKnown RBP eCLIP42.23■■■■■ 4.353e-7■■■■□ 21.6
LSM7-206ENST00000591515 POLA1P09884 1462 aaPredicted RBP42.09■■■■■ 4.33
LSM7-206ENST00000591515 TRHP20396 242 aaPredicted RBP42.07■■■■■ 4.33
LSM7-206ENST00000591515 FBLN2P98095 1184 aa42.02■■■■■ 4.32
LSM7-206ENST00000591515 RAD54L2Q9Y4B4 1467 aa41.93■■■■■ 4.3
LSM7-206ENST00000591515 CLASP1Q7Z460 1538 aa41.86■■■■■ 4.29
LSM7-206ENST00000591515 TDRD9Q8NDG6 1382 aaKnown RBP41.84■■■■■ 4.29
LSM7-206ENST00000591515 SNAPC4Q5SXM2 1469 aa41.82■■■■■ 4.29
LSM7-206ENST00000591515 SOGA1O94964 1423 aa41.8■■■■■ 4.28
LSM7-206ENST00000591515 WDR97A6NE52 1622 aa41.78■■■■■ 4.28
LSM7-206ENST00000591515 FGD5Q6ZNL6 1462 aa41.72■■■■■ 4.27
LSM7-206ENST00000591515 SYNJ1O43426 1573 aa41.71■■■■■ 4.27
LSM7-206ENST00000591515 MAGI1Q96QZ7 1491 aaPredicted RBP41.66■■■■■ 4.26
LSM7-206ENST00000591515 CUX1P39880 1505 aa41.59■■■■■ 4.25
LSM7-206ENST00000591515 CHMP7Q8WUX9 453 aaPredicted RBP41.58■■■■■ 4.25
LSM7-206ENST00000591515 GRIN2BQ13224 1484 aa41.56■■■■■ 4.24
LSM7-206ENST00000591515 SYNJ2O15056 1496 aa41.53■■■■■ 4.24
LSM7-206ENST00000591515 PBRM1Q86U86 1689 aa41.5■■■■■ 4.23
LSM7-206ENST00000591515 GAPVD1Q14C86 1478 aa41.4■■■■■ 4.22
LSM7-206ENST00000591515 AEBP2Q6ZN18 517 aaPredicted RBP41.38■■■■■ 4.21
LSM7-206ENST00000591515 ABCA5Q8WWZ7 1642 aa41.27■■■■■ 4.2
LSM7-206ENST00000591515 SUPT5HO00267 1087 aaKnown RBP41.26■■■■■ 4.2
LSM7-206ENST00000591515 ABCA10Q8WWZ4 1543 aa41.18■■■■■ 4.18
LSM7-206ENST00000591515 ERCC6L2Q5T890 1561 aa41.17■■■■■ 4.18
LSM7-206ENST00000591515 GRIN2AQ12879 1464 aa41.05■■■■■ 4.16
LSM7-206ENST00000591515 ADAMTS12P58397 1594 aa41.01■■■■■ 4.16
LSM7-206ENST00000591515 CEP170Q5SW79 1584 aa41.01■■■■■ 4.16
LSM7-206ENST00000591515 NUP160Q12769 1436 aa40.95■■■■■ 4.15
LSM7-206ENST00000591515 SHROOM2Q13796 1616 aa40.93■■■■■ 4.14
LSM7-206ENST00000591515 KIF13AQ9H1H9 1805 aa40.88■■■■■ 4.13
LSM7-206ENST00000591515 WRNQ14191 1432 aaPredicted RBP eCLIP40.8■■■■■ 4.12
LSM7-206ENST00000591515 BIVM-ERCC5R4GMW8 1640 aa40.77■■■■■ 4.12
LSM7-206ENST00000591515 FHAD1B1AJZ9 1412 aa40.75■■■■■ 4.11
LSM7-206ENST00000591515 TOP2BQ02880 1626 aa40.71■■■■■ 4.11
LSM7-206ENST00000591515 ERICH3Q5RHP9 1530 aa40.66■■■■■ 4.1
LSM7-206ENST00000591515 PRG4Q92954 1404 aaPredicted RBP40.58■■■■■ 4.09
LSM7-206ENST00000591515 RUSC2Q8N2Y8 1516 aa40.46■■■■■ 4.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms