RNA–Protein interactions for RNA: ENST00000589532.5

LSM7-205, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM7, Length 539 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM7-205ENST00000589532 NISCHQ9Y2I1 1504 aa59.86■■■■■ 7.17
LSM7-205ENST00000589532 CCDC180Q9P1Z9 1646 aa53.74■■■■■ 6.19
LSM7-205ENST00000589532 ABCC9O60706 1549 aa53.37■■■■■ 6.13
LSM7-205ENST00000589532 RB1CC1Q8TDY2 1594 aa50.95■■■■■ 5.75
LSM7-205ENST00000589532 NACADO15069 1562 aa50.67■■■■■ 5.7
LSM7-205ENST00000589532 MYO15BQ96JP2 1530 aa50.13■■■■■ 5.62
LSM7-205ENST00000589532 DCAF8L2P0C7V8 631 aa50.01■■■■■ 5.6
LSM7-205ENST00000589532 UNC13AQ9UPW8 1703 aa49.92■■■■■ 5.58
LSM7-205ENST00000589532 DNAJC5BQ9UF47 199 aa49.87■■■■■ 5.57
LSM7-205ENST00000589532 ZCCHC6Q5VYS8 1495 aaKnown RBP49.72■■■■■ 5.55
LSM7-205ENST00000589532 PABPN1Q86U42 306 aaKnown RBP eCLIP49.59■■■■■ 5.53
LSM7-205ENST00000589532 BICRAQ9NZM4 1560 aa49.58■■■■■ 5.53
LSM7-205ENST00000589532 DCAF1Q9Y4B6 1507 aa49.55■■■■■ 5.52
LSM7-205ENST00000589532 SHROOM4Q9ULL8 1493 aa48.94■■■■■ 5.43
LSM7-205ENST00000589532 SCRIBQ14160 1630 aa48.86■■■■■ 5.41
LSM7-205ENST00000589532 CC2D2AQ9P2K1 1620 aa48.3■■■■■ 5.32
LSM7-205ENST00000589532 EIF4G1Q04637 1599 aaKnown RBP48.28■■■■■ 5.32
LSM7-205ENST00000589532 CECR2Q9BXF3 1484 aa48.07■■■■■ 5.29
LSM7-205ENST00000589532 NCAPD3P42695 1498 aa46.76■■■■■ 5.08
LSM7-205ENST00000589532 SMARCA4P51532 1647 aa46.69■■■■■ 5.07
LSM7-205ENST00000589532 ATAD2BQ9ULI0 1458 aa46.64■■■■■ 5.06
LSM7-205ENST00000589532 SMARCA2P51531 1590 aa46.52■■■■■ 5.04
LSM7-205ENST00000589532 HMGXB3Q12766 1538 aa46.51■■■■■ 5.04
LSM7-205ENST00000589532 BAZ1AQ9NRL2 1556 aaPredicted RBP46.45■■■■■ 5.03
LSM7-205ENST00000589532 PEG3Q9GZU2 1588 aa46.32■■■■■ 5.01
LSM7-205ENST00000589532 BAZ1BQ9UIG0 1483 aaKnown RBP46.16■■■■■ 4.98
LSM7-205ENST00000589532 MROH2BQ7Z745 1585 aa46.12■■■■■ 4.97
LSM7-205ENST00000589532 ERCC6Q03468 1493 aa46■■■■■ 4.95
LSM7-205ENST00000589532 CUX2O14529 1486 aa46■■■■■ 4.95
LSM7-205ENST00000589532 NESP48681 1621 aa45.94■■■■■ 4.94
LSM7-205ENST00000589532 LAMC3Q9Y6N6 1575 aa45.71■■■■■ 4.91
LSM7-205ENST00000589532 DNAJC5Q9H3Z4 198 aa45.61■■■■■ 4.89
LSM7-205ENST00000589532 THOC2Q8NI27 1593 aaKnown RBP45.58■■■■■ 4.89
LSM7-205ENST00000589532 WIZO95785 1651 aa45.57■■■■■ 4.88
LSM7-205ENST00000589532 KIF21AQ7Z4S6 1674 aa45.44■■■■■ 4.86
LSM7-205ENST00000589532 PDS5BQ9NTI5 1447 aa45.31■■■■■ 4.84
LSM7-205ENST00000589532 CADPSQ9ULU8 1353 aa45.28■■■■■ 4.84
LSM7-205ENST00000589532 RSF1Q96T23 1441 aaPredicted RBP45.2■■■■■ 4.83
LSM7-205ENST00000589532 TOP2AP11388 1531 aaKnown RBP45.05■■■■■ 4.8
LSM7-205ENST00000589532 MRC2Q9UBG0 1479 aa44.99■■■■■ 4.79
LSM7-205ENST00000589532 WDR62O43379 1518 aa44.96■■■■■ 4.79
LSM7-205ENST00000589532 CFTRP13569 1480 aa44.89■■■■■ 4.78
LSM7-205ENST00000589532 CEP164Q9UPV0 1460 aa44.83■■■■■ 4.77
LSM7-205ENST00000589532 FANCD2Q9BXW9 1451 aa44.79■■■■■ 4.76
LSM7-205ENST00000589532 PRDM2Q13029 1718 aa44.55■■■■■ 4.72
LSM7-205ENST00000589532 URB2Q14146 1524 aaKnown RBP44.48■■■■■ 4.71
LSM7-205ENST00000589532 CCDC88BA6NC98 1476 aa44.45■■■■■ 4.71
LSM7-205ENST00000589532 TOPBP1Q92547 1522 aa44■■■■■ 4.63
LSM7-205ENST00000589532 IFT140Q96RY7 1462 aa43.94■■■■■ 4.62
LSM7-205ENST00000589532 DNMBPQ6XZF7 1577 aa43.89■■■■■ 4.62
LSM7-205ENST00000589532 ABCC8Q09428 1581 aa43.86■■■■■ 4.61
LSM7-205ENST00000589532 ZNF608Q9ULD9 1512 aaPredicted RBP43.86■■■■■ 4.61
LSM7-205ENST00000589532 EIF4G3O43432 1585 aaKnown RBP43.71■■■■■ 4.59
LSM7-205ENST00000589532 OSCARQ8IYS5 282 aa43.7■■■■■ 4.59
LSM7-205ENST00000589532 TARBP1Q13395 1621 aaKnown RBP43.68■■■■■ 4.58
LSM7-205ENST00000589532 POLA1P09884 1462 aaPredicted RBP43.58■■■■■ 4.57
LSM7-205ENST00000589532 TRIM41Q8WV44 630 aa43.55■■■■■ 4.56
LSM7-205ENST00000589532 AQRO60306 1485 aaKnown RBP eCLIP43.41■■■■■ 4.543e-7■■■■□ 21.6
LSM7-205ENST00000589532 RAD54L2Q9Y4B4 1467 aa43.35■■■■■ 4.53
LSM7-205ENST00000589532 RIMBP3CA6NJZ7 1639 aa43.34■■■■■ 4.53
LSM7-205ENST00000589532 RIMBP3BA6NNM3 1639 aa43.34■■■■■ 4.53
LSM7-205ENST00000589532 RIMBP3Q9UFD9 1639 aa43.34■■■■■ 4.53
LSM7-205ENST00000589532 CUX1P39880 1505 aa43.33■■■■■ 4.53
LSM7-205ENST00000589532 CHD1O14646 1710 aa43.31■■■■■ 4.52
LSM7-205ENST00000589532 FGD5Q6ZNL6 1462 aa43.31■■■■■ 4.52
LSM7-205ENST00000589532 WDR97A6NE52 1622 aa43.26■■■■■ 4.52
LSM7-205ENST00000589532 SOGA1O94964 1423 aa43.24■■■■■ 4.51
LSM7-205ENST00000589532 ARHGEF11O15085 1522 aa43.22■■■■■ 4.51
LSM7-205ENST00000589532 TDRD9Q8NDG6 1382 aaKnown RBP43.14■■■■■ 4.5
LSM7-205ENST00000589532 SUPT5HO00267 1087 aaKnown RBP43.04■■■■■ 4.48
LSM7-205ENST00000589532 SNAPC4Q5SXM2 1469 aa43.04■■■■■ 4.48
LSM7-205ENST00000589532 MAGI1Q96QZ7 1491 aaPredicted RBP42.95■■■■■ 4.47
LSM7-205ENST00000589532 GRIN2BQ13224 1484 aa42.93■■■■■ 4.46
LSM7-205ENST00000589532 CLASP1Q7Z460 1538 aa42.88■■■■■ 4.46
LSM7-205ENST00000589532 PBRM1Q86U86 1689 aa42.87■■■■■ 4.45
LSM7-205ENST00000589532 FBLN2P98095 1184 aa42.87■■■■■ 4.45
LSM7-205ENST00000589532 ABCA10Q8WWZ4 1543 aa42.86■■■■■ 4.45
LSM7-205ENST00000589532 ABCA5Q8WWZ7 1642 aa42.86■■■■■ 4.45
LSM7-205ENST00000589532 ARAP1Q96P48 1450 aa42.82■■■■■ 4.45
LSM7-205ENST00000589532 SYNJ2O15056 1496 aa42.8■■■■■ 4.44
LSM7-205ENST00000589532 GAPVD1Q14C86 1478 aa42.79■■■■■ 4.44
LSM7-205ENST00000589532 SYNJ1O43426 1573 aa42.76■■■■■ 4.44
LSM7-205ENST00000589532 BIVM-ERCC5R4GMW8 1640 aa42.75■■■■■ 4.43
LSM7-205ENST00000589532 TOP2BQ02880 1626 aa42.71■■■■■ 4.43
LSM7-205ENST00000589532 CHMP7Q8WUX9 453 aaPredicted RBP42.65■■■■■ 4.42
LSM7-205ENST00000589532 CYB5RLQ6IPT4 315 aa42.64■■■■■ 4.42
LSM7-205ENST00000589532 WRNQ14191 1432 aaPredicted RBP eCLIP42.61■■■■■ 4.41
LSM7-205ENST00000589532 ADAMTS12P58397 1594 aa42.5■■■■■ 4.39
LSM7-205ENST00000589532 GRIN2AQ12879 1464 aa42.43■■■■■ 4.38
LSM7-205ENST00000589532 ERICH3Q5RHP9 1530 aa42.32■■■■■ 4.37
LSM7-205ENST00000589532 NUP160Q12769 1436 aa42.31■■■■■ 4.36
LSM7-205ENST00000589532 CEP170Q5SW79 1584 aa42.31■■■■■ 4.36
LSM7-205ENST00000589532 FHAD1B1AJZ9 1412 aa42.26■■■■■ 4.36
LSM7-205ENST00000589532 ERCC6L2Q5T890 1561 aa42.18■■■■■ 4.34
LSM7-205ENST00000589532 SHROOM2Q13796 1616 aa42.17■■■■■ 4.34
LSM7-205ENST00000589532 TRHP20396 242 aaPredicted RBP42.03■■■■■ 4.32
LSM7-205ENST00000589532 RUSC2Q8N2Y8 1516 aa41.92■■■■■ 4.3
LSM7-205ENST00000589532 PRG4Q92954 1404 aaPredicted RBP41.76■■■■■ 4.28
LSM7-205ENST00000589532 CUL7Q14999 1698 aa41.75■■■■■ 4.27
LSM7-205ENST00000589532 KIF27Q86VH2 1401 aa41.75■■■■■ 4.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms