Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.473e-8■□□□□ 9.3
YBX3P16989 PSMD6-206ENST00000476464 2052 ntTSL 217.87■□□□□ 0.454e-9■□□□□ 9.3
YBX3P16989 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.81■□□□□ 0.443e-8■□□□□ 9.3
YBX3P16989 C18orf21-201ENST00000269194 703 ntTSL 216.7■□□□□ 0.264e-7■□□□□ 9.3
YBX3P16989 PSMD6-209ENST00000482510 1176 ntTSL 5 BASIC15.98■□□□□ 0.154e-9■□□□□ 9.3
YBX3P16989 C18orf21-204ENST00000587873 656 ntTSL 1 (best)15.8■□□□□ 0.124e-7■□□□□ 9.3
YBX3P16989 CHCHD6-206ENST00000513253 690 ntTSL 315.04■□□□□ -05e-6■□□□□ 9.3
YBX3P16989 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.483e-8■□□□□ 9.3
YBX3P16989 TPST2-206ENST00000445720 675 ntTSL 211.14□□□□□ -0.634e-9■□□□□ 9.3
YBX3P16989 UQCRC2-208ENST00000565464 929 ntTSL 510.44□□□□□ -0.744e-9■□□□□ 9.3
YBX3P16989 STRADB-205ENST00000458269 772 ntTSL 510.25□□□□□ -0.774e-9■□□□□ 9.3
YBX3P16989 UQCRC2-213ENST00000630839 535 ntTSL 4 BASIC9.42□□□□□ -0.94e-9■□□□□ 9.3
YBX3P16989 UQCRC2-210ENST00000567757 538 ntTSL 49.16□□□□□ -0.944e-9■□□□□ 9.3
YBX3P16989 NSUN2-205ENST00000505892 3558 ntTSL 1 (best)8.79□□□□□ -15e-6■□□□□ 9.3
YBX3P16989 UQCRC2-207ENST00000565331 565 ntTSL 37.78□□□□□ -1.164e-9■□□□□ 9.3
YBX3P16989 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.63□□□□□ -1.194e-9■□□□□ 9.3
YBX3P16989 PSMD6-208ENST00000480205 657 ntTSL 37.53□□□□□ -1.24e-9■□□□□ 9.3
YBX3P16989 PSMD6-211ENST00000497315 701 ntTSL 36.88□□□□□ -1.314e-9■□□□□ 9.3
YBX3P16989 HK2-203ENST00000472302 395 ntTSL 36.6□□□□□ -1.352e-10■□□□□ 9.3
YBX3P16989 UQCRC2-206ENST00000564095 542 ntTSL 45.44□□□□□ -1.544e-9■□□□□ 9.3
YBX3P16989 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC23.71■■□□□ 1.391e-7■□□□□ 9.3
YBX3P16989 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC23.18■■□□□ 1.31e-7■□□□□ 9.3
YBX3P16989 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.711e-7■□□□□ 9.3
YBX3P16989 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.411e-7■□□□□ 9.3
YBX3P16989 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.46e-11■□□□□ 9.3
YBX3P16989 TGFBI-206ENST00000507018 2469 ntTSL 512.52□□□□□ -0.46e-11■□□□□ 9.3
YBX3P16989 TGFBI-205ENST00000506699 3159 ntTSL 211.55□□□□□ -0.566e-11■□□□□ 9.3
YBX3P16989 TGFBI-210ENST00000509749 437 ntTSL 210.76□□□□□ -0.696e-11■□□□□ 9.3
YBX3P16989 TGFBI-214ENST00000515433 4661 ntTSL 29.84□□□□□ -0.836e-11■□□□□ 9.3
YBX3P16989 TGFBI-208ENST00000508767 582 ntTSL 38.7□□□□□ -1.026e-11■□□□□ 9.3
YBX3P16989 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.567e-9■□□□□ 9.3
YBX3P16989 SMS-203ENST00000457085 931 ntTSL 532.76■■■□□ 2.837e-9■□□□□ 9.3
YBX3P16989 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.93■■□□□ 1.13e-8■□□□□ 9.3
YBX3P16989 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.953e-8■□□□□ 9.3
YBX3P16989 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.673e-8■□□□□ 9.3
YBX3P16989 RAC2-205ENST00000441619 705 ntTSL 511.03□□□□□ -0.643e-8■□□□□ 9.3
YBX3P16989 SLC16A1-204ENST00000458229 2201 ntTSL 221.18■□□□□ 0.985e-7■□□□□ 9.3
YBX3P16989 PKM-203ENST00000389093 2279 ntTSL 5 BASIC26.92■■□□□ 1.95e-18■□□□□ 9.3
YBX3P16989 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.58■■□□□ 1.535e-18■□□□□ 9.3
YBX3P16989 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.83■■□□□ 1.415e-18■□□□□ 9.3
YBX3P16989 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.545e-18■□□□□ 9.3
YBX3P16989 PKM-219ENST00000567118 2254 ntTSL 213.27□□□□□ -0.295e-18■□□□□ 9.3
YBX3P16989 PKM-222ENST00000568883 1863 ntTSL 5 BASIC12.92□□□□□ -0.345e-18■□□□□ 9.3
YBX3P16989 PKM-202ENST00000335181 2318 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.435e-18■□□□□ 9.3
YBX3P16989 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.093e-8■□□□□ 9.3
YBX3P16989 HSPA8-208ENST00000526686 740 ntTSL 1 (best)4.61□□□□□ -1.671e-15■□□□□ 9.3
YBX3P16989 HIST1H2BH-201ENST00000619466 2060 ntAPPRIS P1 BASIC13.02□□□□□ -0.337e-7■□□□□ 9.3
YBX3P16989 USP1-203ENST00000442679 502 ntTSL 215.68■□□□□ 0.16e-8■□□□□ 9.3
YBX3P16989 USP1-204ENST00000452143 893 ntTSL 315□□□□□ -0.016e-8■□□□□ 9.3
YBX3P16989 USP1-201ENST00000339950 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.456e-8■□□□□ 9.3
YBX3P16989 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC8.57□□□□□ -1.046e-8■□□□□ 9.3
YBX3P16989 EIF2AK1-208ENST00000474029 609 ntTSL 39.77□□□□□ -0.852e-10■□□□□ 9.3
YBX3P16989 NSD3-211ENST00000534155 577 ntTSL 424.01■■□□□ 1.431e-6■□□□□ 9.3
YBX3P16989 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.09■□□□□ 0.491e-6■□□□□ 9.3
YBX3P16989 NSD3-203ENST00000433384 5276 ntTSL 1 (best) BASIC12.51□□□□□ -0.411e-6■□□□□ 9.3
YBX3P16989 NSD3-202ENST00000317025 10776 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.511e-6■□□□□ 9.3
YBX3P16989 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.28□□□□□ -1.41e-6■□□□□ 9.3
YBX3P16989 TCF12-222ENST00000561152 675 ntTSL 533.03■■■□□ 2.887e-8■□□□□ 9.3
YBX3P16989 TCF12-210ENST00000558908 553 ntTSL 426.25■■□□□ 1.797e-8■□□□□ 9.3
YBX3P16989 KXD1-207ENST00000596785 712 ntTSL 515.65■□□□□ 0.12e-7■□□□□ 9.3
YBX3P16989 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.582e-12■□□□□ 9.3
YBX3P16989 BOLA3-204ENST00000477685 667 ntTSL 1 (best)18.96■□□□□ 0.633e-8■□□□□ 9.3
YBX3P16989 GPI-212ENST00000589985 1516 ntTSL 324.25■■□□□ 1.471e-40■□□□□ 9.3
YBX3P16989 ACTG1-204ENST00000571721 813 ntTSL 525.62■■□□□ 1.694e-29■□□□□ 9.3
YBX3P16989 ACTG1-202ENST00000570382 471 ntTSL 416.98■□□□□ 0.314e-29■□□□□ 9.3
YBX3P16989 HSPA9-201ENST00000297185 3321 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.633e-11■□□□□ 9.3
YBX3P16989 HSPA9-202ENST00000501917 275 ntTSL 34.59□□□□□ -1.673e-11■□□□□ 9.3
YBX3P16989 IFRD1-213ENST00000476927 486 ntTSL 323.15■■□□□ 1.31e-6■□□□□ 9.3
YBX3P16989 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.211e-6■□□□□ 9.3
YBX3P16989 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.251e-6■□□□□ 9.3
YBX3P16989 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.72□□□□□ -0.211e-6■□□□□ 9.3
YBX3P16989 IFRD1-207ENST00000440625 891 ntTSL 49.4□□□□□ -0.91e-6■□□□□ 9.3
YBX3P16989 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC7.34□□□□□ -1.231e-6■□□□□ 9.3
YBX3P16989 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.54□□□□□ -1.361e-6■□□□□ 9.3
YBX3P16989 CS-207ENST00000547283 555 ntTSL 427.54■■■□□ 25e-10■□□□□ 9.3
YBX3P16989 CS-222ENST00000550996 718 ntTSL 227.54■■■□□ 25e-10■□□□□ 9.3
YBX3P16989 CS-226ENST00000551430 751 ntTSL 327.54■■■□□ 25e-10■□□□□ 9.3
YBX3P16989 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.745e-10■□□□□ 9.3
YBX3P16989 AC073896.1-202ENST00000547423 566 ntTSL 424.29■■□□□ 1.485e-10■□□□□ 9.3
YBX3P16989 CS-219ENST00000550655 589 ntTSL 223.36■■□□□ 1.335e-10■□□□□ 9.3
YBX3P16989 CS-227ENST00000551441 636 ntTSL 322.69■■□□□ 1.225e-10■□□□□ 9.3
YBX3P16989 CS-230ENST00000551968 542 ntTSL 420.08■□□□□ 0.815e-10■□□□□ 9.3
YBX3P16989 CS-231ENST00000552222 555 ntTSL 420.02■□□□□ 0.85e-10■□□□□ 9.3
YBX3P16989 CS-221ENST00000550734 747 ntTSL 516.07■□□□□ 0.165e-10■□□□□ 9.3
YBX3P16989 CS-223ENST00000551137 903 ntTSL 315.27■□□□□ 0.045e-10■□□□□ 9.3
YBX3P16989 CS-218ENST00000550159 646 ntTSL 512.96□□□□□ -0.335e-10■□□□□ 9.3
YBX3P16989 CS-220ENST00000550700 559 ntTSL 411.21□□□□□ -0.615e-10■□□□□ 9.3
YBX3P16989 CS-211ENST00000548041 561 ntTSL 411.09□□□□□ -0.635e-10■□□□□ 9.3
YBX3P16989 CS-206ENST00000546930 568 ntTSL 410.48□□□□□ -0.735e-10■□□□□ 9.3
YBX3P16989 CS-216ENST00000549221 553 ntTSL 49.94□□□□□ -0.825e-10■□□□□ 9.3
YBX3P16989 CS-233ENST00000552688 580 ntTSL 49.59□□□□□ -0.875e-10■□□□□ 9.3
YBX3P16989 KIF2C-206ENST00000472235 480 ntTSL 210.02□□□□□ -0.816e-14■□□□□ 9.3
YBX3P16989 BYSL-204ENST00000489290 1153 ntTSL 325.01■■□□□ 1.591e-6■□□□□ 9.3
YBX3P16989 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.921e-6■□□□□ 9.3
YBX3P16989 BYSL-202ENST00000372996 1299 ntTSL 512.58□□□□□ -0.41e-6■□□□□ 9.3
YBX3P16989 IPO5-220ENST00000489058 522 ntTSL 411.41□□□□□ -0.583e-9■□□□□ 9.3
YBX3P16989 IPO5-229ENST00000631030 192 ntTSL 5 BASIC8.9□□□□□ -0.983e-9■□□□□ 9.3
YBX3P16989 MOB1B-205ENST00000511449 627 ntTSL 322.87■■□□□ 1.251e-6■□□□□ 9.3
YBX3P16989 ACTG1-209ENST00000575659 742 ntTSL 323.43■■□□□ 1.343e-29■□□□□ 9.3
YBX3P16989 ACTG1-211ENST00000575994 856 ntTSL 317.01■□□□□ 0.313e-29■□□□□ 9.3
Retrieved 100 of 29,075 protein–RNA pairs in 145.9 ms