RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 NISCHQ9Y2I1 1504 aa22.37■■□□□ 1.17
USP1-201ENST00000339950 DCAF8L2P0C7V8 631 aa21.19■□□□□ 0.98
USP1-201ENST00000339950 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
USP1-201ENST00000339950 SUPT5HO00267 1087 aaKnown RBP20.99■□□□□ 0.95
USP1-201ENST00000339950 EHMT2Q96KQ7 1210 aa20.17■□□□□ 0.82
USP1-201ENST00000339950 PCGF6Q9BYE7 350 aa19.86■□□□□ 0.77
USP1-201ENST00000339950 FAM9AQ8IZU1 332 aaPredicted RBP19.7■□□□□ 0.74
USP1-201ENST00000339950 LOC105371045A0A1W2PR82 267 aa19.57■□□□□ 0.72
USP1-201ENST00000339950 CHIC1Q5VXU3 224 aa19.49■□□□□ 0.71
USP1-201ENST00000339950 PPARGC1BQ86YN6 1023 aaKnown RBP19.48■□□□□ 0.71
USP1-201ENST00000339950 TTBK1Q5TCY1 1321 aaPredicted RBP19.42■□□□□ 0.7
USP1-201ENST00000339950 HRCP23327 699 aa19.17■□□□□ 0.66
USP1-201ENST00000339950 TRIM41Q8WV44 630 aa19.1■□□□□ 0.65
USP1-201ENST00000339950 MYO15BQ96JP2 1530 aa19.01■□□□□ 0.63
USP1-201ENST00000339950 RANGAP1P46060 587 aaPredicted RBP18.92■□□□□ 0.62
USP1-201ENST00000339950 TRIM26Q12899 539 aaPredicted RBP18.75■□□□□ 0.59
USP1-201ENST00000339950 ZCCHC6Q5VYS8 1495 aaKnown RBP18.75■□□□□ 0.59
USP1-201ENST00000339950 CCER1Q8TC90 406 aaPredicted RBP18.64■□□□□ 0.57
USP1-201ENST00000339950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.61■□□□□ 0.57
USP1-201ENST00000339950 ABCC9O60706 1549 aa18.54■□□□□ 0.56
USP1-201ENST00000339950 UBTFP17480 764 aaKnown RBP18.52■□□□□ 0.56
USP1-201ENST00000339950 YTHDC1Q96MU7 727 aaKnown RBP18.44■□□□□ 0.54
USP1-201ENST00000339950 PABPN1Q86U42 306 aaKnown RBP eCLIP18.39■□□□□ 0.53
USP1-201ENST00000339950 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
USP1-201ENST00000339950 HNRNPUL2Q1KMD3 747 aaKnown RBP18.31■□□□□ 0.52
USP1-201ENST00000339950 ZEB1P37275 1124 aaPredicted RBP18.29■□□□□ 0.52
USP1-201ENST00000339950 CCDC180Q9P1Z9 1646 aa18.23■□□□□ 0.51
USP1-201ENST00000339950 APLP2Q06481 763 aa18.22■□□□□ 0.51
USP1-201ENST00000339950 DCAF1Q9Y4B6 1507 aa18.2■□□□□ 0.5
USP1-201ENST00000339950 PELP1Q8IZL8 1130 aaKnown RBP18.18■□□□□ 0.5
USP1-201ENST00000339950 ITGAEP38570 1179 aa18.12■□□□□ 0.49
USP1-201ENST00000339950 RSF1Q96T23 1441 aaPredicted RBP18.1■□□□□ 0.49
USP1-201ENST00000339950 ATP1B4Q9UN42 357 aaPredicted RBP18.08■□□□□ 0.49
USP1-201ENST00000339950 DIEXFQ68CQ4 756 aaKnown RBP18.03■□□□□ 0.48
USP1-201ENST00000339950 CECR2Q9BXF3 1484 aa17.99■□□□□ 0.47
USP1-201ENST00000339950 SCAF1Q9H7N4 1312 aaKnown RBP17.95■□□□□ 0.46
USP1-201ENST00000339950 CENPBP07199 599 aaPredicted RBP17.94■□□□□ 0.46
USP1-201ENST00000339950 GTF3C3Q9Y5Q9 886 aa17.91■□□□□ 0.46
USP1-201ENST00000339950 NEUROD1Q13562 356 aa17.85■□□□□ 0.45
USP1-201ENST00000339950 RB1CC1Q8TDY2 1594 aa17.85■□□□□ 0.45
USP1-201ENST00000339950 CSRNP3Q8WYN3 585 aa17.81■□□□□ 0.44
USP1-201ENST00000339950 ACIN1Q9UKV3 1341 aaKnown RBP17.7■□□□□ 0.42
USP1-201ENST00000339950 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
USP1-201ENST00000339950 P3H3Q8IVL6 736 aa17.64■□□□□ 0.41
USP1-201ENST00000339950 CNGB1Q14028 1251 aaPredicted RBP17.62■□□□□ 0.41
USP1-201ENST00000339950 SOGA1O94964 1423 aa17.62■□□□□ 0.41
USP1-201ENST00000339950 ZNF316A6NFI3 1004 aaPredicted RBP17.61■□□□□ 0.41
USP1-201ENST00000339950 ABCC8Q09428 1581 aa17.58■□□□□ 0.4
USP1-201ENST00000339950 MIER1Q8N108 512 aa17.57■□□□□ 0.4
USP1-201ENST00000339950 BCANQ96GW7 911 aa17.53■□□□□ 0.4
USP1-201ENST00000339950 CCDC88BA6NC98 1476 aa17.52■□□□□ 0.4
USP1-201ENST00000339950 MYT1Q01538 1121 aa17.52■□□□□ 0.4
USP1-201ENST00000339950 CEP162Q5TB80 1403 aa17.52■□□□□ 0.39
USP1-201ENST00000339950 WIZO95785 1651 aa17.51■□□□□ 0.39
USP1-201ENST00000339950 FAM50AQ14320 339 aaKnown RBP17.5■□□□□ 0.39
USP1-201ENST00000339950 HIRIP3Q9BW71 556 aaPredicted RBP17.48■□□□□ 0.39
USP1-201ENST00000339950 RUSC2Q8N2Y8 1516 aa17.45■□□□□ 0.38
USP1-201ENST00000339950 ARID3CA6NKF2 412 aa17.45■□□□□ 0.38
USP1-201ENST00000339950 CLIP1P30622 1438 aa17.3■□□□□ 0.36
USP1-201ENST00000339950 POLR3GLQ9BT43 218 aa17.3■□□□□ 0.36
USP1-201ENST00000339950 WRNQ14191 1432 aaPredicted RBP eCLIP17.26■□□□□ 0.35
USP1-201ENST00000339950 KANK4Q5T7N3 995 aaPredicted RBP17.24■□□□□ 0.35
USP1-201ENST00000339950 DDX10Q13206 875 aaKnown RBP17.23■□□□□ 0.35
USP1-201ENST00000339950 TNIKQ9UKE5 1360 aa17.22■□□□□ 0.35
USP1-201ENST00000339950 NACADO15069 1562 aa17.22■□□□□ 0.35
USP1-201ENST00000339950 SENP3-EIF4A1A0A087X0R7 540 aa17.17■□□□□ 0.34
USP1-201ENST00000339950 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
USP1-201ENST00000339950 ERICH6Q7L0X2 663 aa17.15■□□□□ 0.34
USP1-201ENST00000339950 TRIM52Q96A61 297 aa17.15■□□□□ 0.34
USP1-201ENST00000339950 SIN3AQ96ST3 1273 aa17.15■□□□□ 0.34
USP1-201ENST00000339950 GOLGA3Q08378 1498 aa17.14■□□□□ 0.33
USP1-201ENST00000339950 NEFLP07196 543 aa17.11■□□□□ 0.33
USP1-201ENST00000339950 KCNH8Q96L42 1107 aa17.11■□□□□ 0.33
USP1-201ENST00000339950 CHIC2Q9UKJ5 165 aa17.08■□□□□ 0.32
USP1-201ENST00000339950 IRX6P78412 446 aaPredicted RBP17.04■□□□□ 0.32
USP1-201ENST00000339950 ZNF326Q5BKZ1 582 aaKnown RBP17.03■□□□□ 0.32
USP1-201ENST00000339950 FKBP8Q14318 412 aa17.03■□□□□ 0.32
USP1-201ENST00000339950 RAPGEF2Q9Y4G8 1499 aa17.02■□□□□ 0.31
USP1-201ENST00000339950 BAZ1BQ9UIG0 1483 aaKnown RBP16.99■□□□□ 0.31
USP1-201ENST00000339950 CEP164Q9UPV0 1460 aa16.96■□□□□ 0.31
USP1-201ENST00000339950 EEA1Q15075 1411 aa16.94■□□□□ 0.3
USP1-201ENST00000339950 TOP2AP11388 1531 aaKnown RBP16.93■□□□□ 0.3
USP1-201ENST00000339950 FBLN2P98095 1184 aa16.91■□□□□ 0.3
USP1-201ENST00000339950 ANP32CO43423 234 aa16.9■□□□□ 0.3
USP1-201ENST00000339950 RRP7BPQ9NSQ0 103 aa16.9■□□□□ 0.3
USP1-201ENST00000339950 VPS8Q8N3P4 1428 aa16.89■□□□□ 0.29
USP1-201ENST00000339950 SMARCA2P51531 1590 aa16.89■□□□□ 0.29
USP1-201ENST00000339950 SMARCA4P51532 1647 aa16.88■□□□□ 0.29
USP1-201ENST00000339950 SUPT16HQ9Y5B9 1047 aaKnown RBP16.84■□□□□ 0.29
USP1-201ENST00000339950 ZNF777Q9ULD5 760 aaPredicted RBP16.84■□□□□ 0.29
USP1-201ENST00000339950 HNRNPUQ00839 825 aaKnown RBP eCLIP16.82■□□□□ 0.28
USP1-201ENST00000339950 FAM9BQ8IZU0 186 aa16.8■□□□□ 0.28
USP1-201ENST00000339950 FOXD1Q16676 465 aa16.78■□□□□ 0.28
USP1-201ENST00000339950 CCNB3Q8WWL7 1395 aa16.77■□□□□ 0.27
USP1-201ENST00000339950 SALL2Q9Y467 1007 aaPredicted RBP16.77■□□□□ 0.27
USP1-201ENST00000339950 TONSLQ96HA7 1378 aa16.76■□□□□ 0.27
USP1-201ENST00000339950 ATAD2BQ9ULI0 1458 aa16.75■□□□□ 0.27
USP1-201ENST00000339950 DHX57Q6P158 1386 aaKnown RBP16.75■□□□□ 0.27
USP1-201ENST00000339950 KIF27Q86VH2 1401 aa16.75■□□□□ 0.27
USP1-201ENST00000339950 CUX2O14529 1486 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms