RNA–Protein interactions for RNA: ENST00000452143.5

USP1-204, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 3

Gene USP1, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-204ENST00000452143 NISCHQ9Y2I1 1504 aa27.5■■□□□ 1.99
USP1-204ENST00000452143 AEBP2Q6ZN18 517 aaPredicted RBP25.62■■□□□ 1.69
USP1-204ENST00000452143 CCDC180Q9P1Z9 1646 aa24.81■■□□□ 1.56
USP1-204ENST00000452143 ABCC9O60706 1549 aa24.65■■□□□ 1.54
USP1-204ENST00000452143 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
USP1-204ENST00000452143 RB1CC1Q8TDY2 1594 aa23.57■■□□□ 1.36
USP1-204ENST00000452143 NACADO15069 1562 aa23.4■■□□□ 1.34
USP1-204ENST00000452143 MYO15BQ96JP2 1530 aa23.11■■□□□ 1.29
USP1-204ENST00000452143 UNC13AQ9UPW8 1703 aa23.05■■□□□ 1.28
USP1-204ENST00000452143 DNAJC5BQ9UF47 199 aa23.04■■□□□ 1.28
USP1-204ENST00000452143 DCAF8L2P0C7V8 631 aa23.02■■□□□ 1.28
USP1-204ENST00000452143 PABPN1Q86U42 306 aaKnown RBP eCLIP22.86■■□□□ 1.25
USP1-204ENST00000452143 BICRAQ9NZM4 1560 aa22.84■■□□□ 1.25
USP1-204ENST00000452143 ZCCHC6Q5VYS8 1495 aaKnown RBP22.82■■□□□ 1.24
USP1-204ENST00000452143 DCAF1Q9Y4B6 1507 aa22.79■■□□□ 1.24
USP1-204ENST00000452143 SHROOM4Q9ULL8 1493 aa22.65■■□□□ 1.22
USP1-204ENST00000452143 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
USP1-204ENST00000452143 CC2D2AQ9P2K1 1620 aa22.33■■□□□ 1.17
USP1-204ENST00000452143 EIF4G1Q04637 1599 aaKnown RBP22.3■■□□□ 1.16
USP1-204ENST00000452143 CECR2Q9BXF3 1484 aa22.24■■□□□ 1.15
USP1-204ENST00000452143 SENP3Q9H4L4 574 aaPredicted RBP22.04■■□□□ 1.12
USP1-204ENST00000452143 PHF23Q9BUL5 403 aaPredicted RBP21.63■■□□□ 1.05
USP1-204ENST00000452143 NCAPD3P42695 1498 aa21.56■■□□□ 1.04
USP1-204ENST00000452143 SMARCA4P51532 1647 aa21.49■■□□□ 1.03
USP1-204ENST00000452143 SMARCA2P51531 1590 aa21.47■■□□□ 1.03
USP1-204ENST00000452143 ATAD2BQ9ULI0 1458 aa21.46■■□□□ 1.03
USP1-204ENST00000452143 HMGXB3Q12766 1538 aa21.46■■□□□ 1.03
USP1-204ENST00000452143 BAZ1AQ9NRL2 1556 aaPredicted RBP21.39■■□□□ 1.01
USP1-204ENST00000452143 CUX2O14529 1486 aa21.36■■□□□ 1.01
USP1-204ENST00000452143 ERCC6Q03468 1493 aa21.32■■□□□ 1
USP1-204ENST00000452143 PEG3Q9GZU2 1588 aa21.32■■□□□ 1
USP1-204ENST00000452143 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
USP1-204ENST00000452143 DNAJC5Q9H3Z4 198 aa21.25■□□□□ 0.99
USP1-204ENST00000452143 NESP48681 1621 aa21.17■□□□□ 0.98
USP1-204ENST00000452143 MROH2BQ7Z745 1585 aa21.15■□□□□ 0.98
USP1-204ENST00000452143 LAMC3Q9Y6N6 1575 aa21.13■□□□□ 0.97
USP1-204ENST00000452143 THOC2Q8NI27 1593 aaKnown RBP21.06■□□□□ 0.96
USP1-204ENST00000452143 KIF21AQ7Z4S6 1674 aa20.99■□□□□ 0.95
USP1-204ENST00000452143 PDS5BQ9NTI5 1447 aa20.95■□□□□ 0.94
USP1-204ENST00000452143 WIZO95785 1651 aa20.92■□□□□ 0.94
USP1-204ENST00000452143 CADPSQ9ULU8 1353 aa20.86■□□□□ 0.93
USP1-204ENST00000452143 MRC2Q9UBG0 1479 aa20.79■□□□□ 0.92
USP1-204ENST00000452143 WDR62O43379 1518 aa20.77■□□□□ 0.92
USP1-204ENST00000452143 TOP2AP11388 1531 aaKnown RBP20.7■□□□□ 0.9
USP1-204ENST00000452143 RSF1Q96T23 1441 aaPredicted RBP20.7■□□□□ 0.9
USP1-204ENST00000452143 CEP164Q9UPV0 1460 aa20.69■□□□□ 0.9
USP1-204ENST00000452143 CFTRP13569 1480 aa20.66■□□□□ 0.9
USP1-204ENST00000452143 FANCD2Q9BXW9 1451 aa20.64■□□□□ 0.89
USP1-204ENST00000452143 PRDM2Q13029 1718 aa20.58■□□□□ 0.88
USP1-204ENST00000452143 FOXD1Q16676 465 aa20.56■□□□□ 0.88
USP1-204ENST00000452143 URB2Q14146 1524 aaKnown RBP20.48■□□□□ 0.87
USP1-204ENST00000452143 CCDC88BA6NC98 1476 aa20.38■□□□□ 0.85
USP1-204ENST00000452143 IFT140Q96RY7 1462 aa20.29■□□□□ 0.84
USP1-204ENST00000452143 ABCC8Q09428 1581 aa20.26■□□□□ 0.83
USP1-204ENST00000452143 OSCARQ8IYS5 282 aa20.26■□□□□ 0.83
USP1-204ENST00000452143 TOPBP1Q92547 1522 aa20.26■□□□□ 0.83
USP1-204ENST00000452143 TRIM41Q8WV44 630 aa20.24■□□□□ 0.83
USP1-204ENST00000452143 DNMBPQ6XZF7 1577 aa20.23■□□□□ 0.83
USP1-204ENST00000452143 ZNF608Q9ULD9 1512 aaPredicted RBP20.2■□□□□ 0.82
USP1-204ENST00000452143 EIF4G3O43432 1585 aaKnown RBP20.18■□□□□ 0.82
USP1-204ENST00000452143 POTEDQ86YR6 584 aa20.13■□□□□ 0.81
USP1-204ENST00000452143 TARBP1Q13395 1621 aaKnown RBP20.12■□□□□ 0.81
USP1-204ENST00000452143 RIMBP3CA6NJZ7 1639 aa20.09■□□□□ 0.81
USP1-204ENST00000452143 RIMBP3BA6NNM3 1639 aa20.09■□□□□ 0.81
USP1-204ENST00000452143 RIMBP3Q9UFD9 1639 aa20.09■□□□□ 0.81
USP1-204ENST00000452143 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
USP1-204ENST00000452143 CHD1O14646 1710 aa20.03■□□□□ 0.8
USP1-204ENST00000452143 ARHGEF11O15085 1522 aa20.02■□□□□ 0.79
USP1-204ENST00000452143 WDR97A6NE52 1622 aa20■□□□□ 0.79
USP1-204ENST00000452143 AQRO60306 1485 aaKnown RBP eCLIP19.99■□□□□ 0.794e-6■□□□□ 10.8
USP1-204ENST00000452143 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
USP1-204ENST00000452143 RAD54L2Q9Y4B4 1467 aa19.92■□□□□ 0.78
USP1-204ENST00000452143 SOGA1O94964 1423 aa19.91■□□□□ 0.78
USP1-204ENST00000452143 CUX1P39880 1505 aa19.89■□□□□ 0.77
USP1-204ENST00000452143 TDRD9Q8NDG6 1382 aaKnown RBP19.84■□□□□ 0.77
USP1-204ENST00000452143 SNAPC4Q5SXM2 1469 aa19.84■□□□□ 0.77
USP1-204ENST00000452143 MAGI1Q96QZ7 1491 aaPredicted RBP19.84■□□□□ 0.77
USP1-204ENST00000452143 FBLN2P98095 1184 aa19.8■□□□□ 0.76
USP1-204ENST00000452143 CLASP1Q7Z460 1538 aa19.8■□□□□ 0.76
USP1-204ENST00000452143 GRIN2BQ13224 1484 aa19.79■□□□□ 0.76
USP1-204ENST00000452143 ARAP1Q96P48 1450 aa19.79■□□□□ 0.76
USP1-204ENST00000452143 SYNJ1O43426 1573 aa19.79■□□□□ 0.76
USP1-204ENST00000452143 PBRM1Q86U86 1689 aa19.78■□□□□ 0.76
USP1-204ENST00000452143 SYNJ2O15056 1496 aa19.75■□□□□ 0.75
USP1-204ENST00000452143 CYB5RLQ6IPT4 315 aa19.74■□□□□ 0.75
USP1-204ENST00000452143 ABCA5Q8WWZ7 1642 aa19.73■□□□□ 0.75
USP1-204ENST00000452143 ABCA10Q8WWZ4 1543 aa19.71■□□□□ 0.75
USP1-204ENST00000452143 GAPVD1Q14C86 1478 aa19.71■□□□□ 0.75
USP1-204ENST00000452143 CHMP7Q8WUX9 453 aaPredicted RBP19.69■□□□□ 0.74
USP1-204ENST00000452143 BIVM-ERCC5R4GMW8 1640 aa19.65■□□□□ 0.74
USP1-204ENST00000452143 SUPT5HO00267 1087 aaKnown RBP19.63■□□□□ 0.73
USP1-204ENST00000452143 TOP2BQ02880 1626 aa19.62■□□□□ 0.73
USP1-204ENST00000452143 WRNQ14191 1432 aaPredicted RBP eCLIP19.6■□□□□ 0.73
USP1-204ENST00000452143 ADAMTS12P58397 1594 aa19.57■□□□□ 0.72
USP1-204ENST00000452143 MSH5O43196 834 aa19.57■□□□□ 0.72
USP1-204ENST00000452143 GRIN2AQ12879 1464 aa19.55■□□□□ 0.72
USP1-204ENST00000452143 TRHP20396 242 aaPredicted RBP19.53■□□□□ 0.72
USP1-204ENST00000452143 ERICH3Q5RHP9 1530 aa19.49■□□□□ 0.71
USP1-204ENST00000452143 NUP160Q12769 1436 aa19.49■□□□□ 0.71
USP1-204ENST00000452143 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms