Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7□□□□□ -1.294e-11■□□□□ 9.6
YBX3P16989 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.92□□□□□ -1.34e-11■□□□□ 9.6
YBX3P16989 SERBP1-206ENST00000484880 628 ntTSL 27.66□□□□□ -1.183e-6■□□□□ 9.6
YBX3P16989 WDR55-202ENST00000504897 2953 ntTSL 215.15■□□□□ 0.025e-6■□□□□ 9.6
YBX3P16989 WDR55-203ENST00000506393 2477 ntTSL 213.19□□□□□ -0.35e-6■□□□□ 9.6
YBX3P16989 WDR55-204ENST00000511232 3812 ntTSL 211.14□□□□□ -0.635e-6■□□□□ 9.6
YBX3P16989 WDR55-201ENST00000358337 4080 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.635e-6■□□□□ 9.6
YBX3P16989 EIF3H-207ENST00000520289 855 ntTSL 28.44□□□□□ -1.061e-30■□□□□ 9.6
YBX3P16989 PRKDC-205ENST00000535375 464 ntTSL 38.21□□□□□ -1.16e-10■□□□□ 9.6
YBX3P16989 CD81-215ENST00000530648 558 ntTSL 416.96■□□□□ 0.312e-9■□□□□ 9.6
YBX3P16989 SEMA4B-209ENST00000559247 850 ntTSL 218.73■□□□□ 0.595e-6■□□□□ 9.6
YBX3P16989 SEMA4B-213ENST00000559983 758 ntTSL 318.38■□□□□ 0.535e-6■□□□□ 9.6
YBX3P16989 SEMA4B-220ENST00000561321 563 ntTSL 216.4■□□□□ 0.225e-6■□□□□ 9.6
YBX3P16989 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.025e-6■□□□□ 9.6
YBX3P16989 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC7.64□□□□□ -1.195e-6■□□□□ 9.6
YBX3P16989 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.99□□□□□ -1.775e-6■□□□□ 9.6
YBX3P16989 CAND1-201ENST00000535146 560 ntTSL 35.85□□□□□ -1.471e-8■□□□□ 9.6
YBX3P16989 IDH1-206ENST00000451391 563 ntTSL 324.86■■□□□ 1.578e-7■□□□□ 9.6
YBX3P16989 IDH1-204ENST00000417583 702 ntTSL 418.28■□□□□ 0.528e-7■□□□□ 9.6
YBX3P16989 IDH1-208ENST00000481557 556 ntTSL 216.44■□□□□ 0.228e-7■□□□□ 9.6
YBX3P16989 IDH1-207ENST00000462386 1614 ntTSL 215.33■□□□□ 0.048e-7■□□□□ 9.6
YBX3P16989 UAP1-205ENST00000474728 660 ntTSL 27.03□□□□□ -1.283e-8■□□□□ 9.6
YBX3P16989 SART3-202ENST00000431469 2834 ntTSL 1 (best) BASIC11.69□□□□□ -0.543e-7■□□□□ 9.6
YBX3P16989 SART3-201ENST00000228284 4004 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.773e-7■□□□□ 9.6
YBX3P16989 SART3-204ENST00000546728 3637 ntTSL 1 (best)8.6□□□□□ -1.033e-7■□□□□ 9.6
YBX3P16989 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.4■□□□□ 0.864e-6■□□□□ 9.6
YBX3P16989 LOX-201ENST00000231004 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.484e-6■□□□□ 9.6
YBX3P16989 FAM189B-209ENST00000497941 871 ntTSL 224.59■■□□□ 1.534e-9■□□□□ 9.6
YBX3P16989 CALR-205ENST00000587486 957 ntTSL 221.99■■□□□ 1.111e-36■□□□□ 9.6
YBX3P16989 CALR-207ENST00000590325 781 ntTSL 218.2■□□□□ 0.51e-36■□□□□ 9.6
YBX3P16989 SDF2L1-202ENST00000466935 601 ntTSL 233.49■■■□□ 2.951e-23■□□□□ 9.6
YBX3P16989 EMC1-201ENST00000375199 5408 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.586e-7■□□□□ 9.6
YBX3P16989 EMC1-207ENST00000477853 6664 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.696e-7■□□□□ 9.6
YBX3P16989 EMC1-202ENST00000375208 4084 ntTSL 2 BASIC9.4□□□□□ -0.96e-7■□□□□ 9.6
YBX3P16989 MDH2-207ENST00000490105 569 ntTSL 330.89■■■□□ 2.543e-16■□□□□ 9.6
YBX3P16989 FN1-215ENST00000461974 571 ntTSL 25.58□□□□□ -1.521e-323■□□□□ 9.6
YBX3P16989 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.977e-7■□□□□ 9.6
YBX3P16989 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.077e-7■□□□□ 9.6
YBX3P16989 CCNI-208ENST00000515468 636 ntTSL 36.34□□□□□ -1.398e-12■□□□□ 9.6
YBX3P16989 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.142e-15■□□□□ 9.6
YBX3P16989 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.52e-15■□□□□ 9.6
YBX3P16989 AP3S1-203ENST00000505423 611 ntTSL 26.58□□□□□ -1.369e-8■□□□□ 9.6
YBX3P16989 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.275e-6■□□□□ 9.6
YBX3P16989 SBDS-202ENST00000414306 1531 ntTSL 522.22■■□□□ 1.155e-6■□□□□ 9.6
YBX3P16989 IPO11-209ENST00000506905 550 ntTSL 36.74□□□□□ -1.339e-9■□□□□ 9.6
YBX3P16989 CACYBP-206ENST00000469173 904 ntTSL 38.24□□□□□ -1.092e-6■□□□□ 9.6
YBX3P16989 MDH2-208ENST00000492663 546 ntTSL 29.55□□□□□ -0.884e-16■□□□□ 9.6
YBX3P16989 RPL41-201ENST00000358888 551 ntTSL 313.93□□□□□ -0.189e-9■□□□□ 9.6
YBX3P16989 RPL41-204ENST00000546591 699 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.759e-9■□□□□ 9.6
YBX3P16989 RPL41-203ENST00000546485 335 ntTSL 29.38□□□□□ -0.919e-9■□□□□ 9.6
YBX3P16989 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.929e-9■□□□□ 9.6
YBX3P16989 GPI-203ENST00000586077 3053 nt10.93□□□□□ -0.665e-14■□□□□ 9.6
YBX3P16989 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.56■■■□□ 2.482e-10■□□□□ 9.6
YBX3P16989 EIF2AK1-210ENST00000495565 629 ntTSL 38.92□□□□□ -0.981e-10■□□□□ 9.6
YBX3P16989 OSBPL9-221ENST00000531819 4520 ntTSL 25.09□□□□□ -1.596e-10■□□□□ 9.6
YBX3P16989 CKAP5-212ENST00000533413 3084 ntTSL 1 (best)6.07□□□□□ -1.447e-7■□□□□ 9.6
YBX3P16989 BNIP3-204ENST00000633835 1062 ntTSL 328.57■■■□□ 2.161e-7■□□□□ 9.6
YBX3P16989 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.021e-7■□□□□ 9.6
YBX3P16989 BNIP3-202ENST00000540159 3066 ntTSL 1 (best)13.94□□□□□ -0.181e-7■□□□□ 9.6
YBX3P16989 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.684e-18■□□□□ 9.6
YBX3P16989 CHCHD2-202ENST00000473095 694 ntTSL 1 (best)18.85■□□□□ 0.614e-18■□□□□ 9.6
YBX3P16989 CNOT1-214ENST00000568917 1317 ntTSL 510.62□□□□□ -0.718e-7■□□□□ 9.6
YBX3P16989 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.112e-7■□□□□ 9.6
YBX3P16989 TUBG1-202ENST00000588056 574 ntTSL 227.32■■□□□ 1.962e-7■□□□□ 9.6
YBX3P16989 TUBG1-205ENST00000591509 847 ntTSL 327.32■■□□□ 1.962e-7■□□□□ 9.6
YBX3P16989 NAE1-220ENST00000569348 567 ntTSL 426.83■■□□□ 1.891e-9■□□□□ 9.6
YBX3P16989 NAE1-212ENST00000563419 649 ntTSL 426.83■■□□□ 1.891e-9■□□□□ 9.6
YBX3P16989 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.733e-17■□□□□ 9.6
YBX3P16989 HSF1-205ENST00000528842 935 ntTSL 225.81■■□□□ 1.722e-7■□□□□ 9.6
YBX3P16989 ZFAND1-205ENST00000518419 567 ntTSL 425.73■■□□□ 1.713e-9■□□□□ 9.6
YBX3P16989 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC25.24■■□□□ 1.632e-7■□□□□ 9.6
YBX3P16989 NAE1-214ENST00000565535 580 ntTSL 525.17■■□□□ 1.621e-9■□□□□ 9.6
YBX3P16989 NAE1-208ENST00000562757 585 ntTSL 225.03■■□□□ 1.61e-9■□□□□ 9.6
YBX3P16989 MMS19-205ENST00000422685 877 ntAPPRIS ALT2 TSL 524.88■■□□□ 1.572e-7■□□□□ 9.6
YBX3P16989 MMS19-208ENST00000437002 933 ntAPPRIS ALT2 TSL 524.88■■□□□ 1.572e-7■□□□□ 9.6
YBX3P16989 ZFAND1-210ENST00000520076 570 ntTSL 424.85■■□□□ 1.573e-9■□□□□ 9.6
YBX3P16989 POFUT1-205ENST00000486717 959 ntTSL 224.2■■□□□ 1.462e-7■□□□□ 9.6
YBX3P16989 MMS19-210ENST00000439048 609 ntTSL 523.92■■□□□ 1.422e-7■□□□□ 9.6
YBX3P16989 MMS19-211ENST00000441194 916 ntTSL 523.46■■□□□ 1.352e-7■□□□□ 9.6
YBX3P16989 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.7■■□□□ 1.224e-8■□□□□ 9.6
YBX3P16989 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC21.49■■□□□ 1.033e-17■□□□□ 9.6
YBX3P16989 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.82■□□□□ 0.924e-8■□□□□ 9.6
YBX3P16989 TRIT1-209ENST00000486825 850 ntTSL 520.46■□□□□ 0.872e-7■□□□□ 9.6
YBX3P16989 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC20.37■□□□□ 0.853e-17■□□□□ 9.6
YBX3P16989 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.64■□□□□ 0.742e-7■□□□□ 9.6
YBX3P16989 MMS19-213ENST00000448660 776 ntTSL 519.4■□□□□ 0.72e-7■□□□□ 9.6
YBX3P16989 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.672e-7■□□□□ 9.6
YBX3P16989 GRN-213ENST00000588237 558 ntTSL 517.82■□□□□ 0.442e-7■□□□□ 9.6
YBX3P16989 KANSL1-223ENST00000639150 1815 ntTSL 517.55■□□□□ 0.42e-7■□□□□ 9.6
YBX3P16989 MED12-205ENST00000444034 752 ntTSL 517.1■□□□□ 0.332e-7■□□□□ 9.6
YBX3P16989 TRIT1-212ENST00000492612 983 ntTSL 516.88■□□□□ 0.292e-7■□□□□ 9.6
YBX3P16989 ATF6B-216ENST00000494022 320 ntTSL 216.88■□□□□ 0.292e-7■□□□□ 9.6
YBX3P16989 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.224e-8■□□□□ 9.6
YBX3P16989 ZFAND1-203ENST00000517450 550 ntTSL 416.1■□□□□ 0.173e-9■□□□□ 9.6
YBX3P16989 TUBG1-204ENST00000589688 1505 ntTSL 516.01■□□□□ 0.152e-7■□□□□ 9.6
YBX3P16989 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.153e-9■□□□□ 9.6
YBX3P16989 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.153e-9■□□□□ 9.6
YBX3P16989 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.84■□□□□ 0.132e-7■□□□□ 9.6
YBX3P16989 MMS19-214ENST00000477575 986 ntTSL 215.58■□□□□ 0.082e-7■□□□□ 9.6
YBX3P16989 KANSL1-203ENST00000571698 2276 ntTSL 515.52■□□□□ 0.082e-7■□□□□ 9.6
Retrieved 100 of 29,075 protein–RNA pairs in 152.4 ms