Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC8.4□□□□□ -1.061e-8■■■□□ 15.1
SFPQP23246 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC8.31□□□□□ -1.081e-8■■■□□ 15.1
SFPQP23246 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC8.19□□□□□ -1.11e-8■■■□□ 15.1
SFPQP23246 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.6□□□□□ -1.191e-8■■■□□ 15.1
SFPQP23246 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.6□□□□□ -1.191e-8■■■□□ 15.1
SFPQP23246 CTNND1-209ENST00000524579 505 ntTSL 45.46□□□□□ -1.541e-8■■■□□ 15.1
SFPQP23246 SEPT9-217ENST00000587237 548 ntTSL 516.07■□□□□ 0.167e-7■■■□□ 15.1
SFPQP23246 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.33■□□□□ 0.682e-7■■■□□ 15.1
SFPQP23246 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC13.3□□□□□ -0.282e-7■■■□□ 15.1
SFPQP23246 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.97■■□□□ 1.278e-7■■■□□ 15.1
SFPQP23246 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.49■□□□□ 0.391e-6■■■□□ 15.1
SFPQP23246 NFIA-210ENST00000479364 1010 ntTSL 513.76□□□□□ -0.211e-6■■■□□ 15.1
SFPQP23246 NFIA-207ENST00000403491 9487 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.321e-6■■■□□ 15.1
SFPQP23246 NFIA-202ENST00000371184 1348 ntTSL 5 BASIC12.97□□□□□ -0.331e-6■■■□□ 15.1
SFPQP23246 NFIA-203ENST00000371185 1714 ntTSL 5 BASIC11.84□□□□□ -0.511e-6■■■□□ 15.1
SFPQP23246 NFIA-212ENST00000485903 1674 ntTSL 5 BASIC9.99□□□□□ -0.811e-6■■■□□ 15.1
SFPQP23246 NFIA-206ENST00000371191 1916 ntTSL 5 BASIC9.83□□□□□ -0.841e-6■■■□□ 15.1
SFPQP23246 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC9.69□□□□□ -0.861e-6■■■□□ 15.1
SFPQP23246 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.48□□□□□ -1.211e-6■■■□□ 15.1
SFPQP23246 NFIA-209ENST00000476646 730 ntTSL 35.34□□□□□ -1.551e-6■■■□□ 15.1
SFPQP23246 ACSL3-204ENST00000413316 650 ntTSL 411.17□□□□□ -0.624e-7■■■□□ 15.1
SFPQP23246 SEPT9-229ENST00000590576 583 ntTSL 322.73■■□□□ 1.236e-7■■■□□ 15.1
SFPQP23246 RANBP3-210ENST00000587463 461 ntTSL 520.56■□□□□ 0.884e-6■■■□□ 15
SFPQP23246 RANBP3-215ENST00000588879 535 ntTSL 520.56■□□□□ 0.884e-6■■■□□ 15
SFPQP23246 RANBP3-223ENST00000591736 573 ntTSL 420.56■□□□□ 0.884e-6■■■□□ 15
SFPQP23246 RANBP3-224ENST00000591881 575 ntTSL 519.35■□□□□ 0.694e-6■■■□□ 15
SFPQP23246 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.614e-6■■■□□ 15
SFPQP23246 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.544e-6■■■□□ 15
SFPQP23246 RANBP3-211ENST00000587479 547 ntTSL 417.65■□□□□ 0.424e-6■■■□□ 15
SFPQP23246 RANBP3-217ENST00000589886 472 ntTSL 417.33■□□□□ 0.364e-6■■■□□ 15
SFPQP23246 RANBP3-221ENST00000591124 575 ntTSL 416.84■□□□□ 0.294e-6■■■□□ 15
SFPQP23246 RANBP3-208ENST00000587263 579 ntTSL 516.6■□□□□ 0.254e-6■■■□□ 15
SFPQP23246 RANBP3-229ENST00000592771 1937 ntTSL 1 (best)16.31■□□□□ 0.24e-6■■■□□ 15
SFPQP23246 RANBP3-225ENST00000592133 562 ntTSL 413.69□□□□□ -0.224e-6■■■□□ 15
SFPQP23246 RANBP3-203ENST00000439268 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.274e-6■■■□□ 15
SFPQP23246 RANBP3-202ENST00000340578 3233 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.334e-6■■■□□ 15
SFPQP23246 RANBP3-228ENST00000592621 818 ntTSL 512.93□□□□□ -0.344e-6■■■□□ 15
SFPQP23246 RANBP3-205ENST00000586117 524 ntTSL 411.87□□□□□ -0.514e-6■■■□□ 15
SFPQP23246 RANBP3-207ENST00000587159 554 ntTSL 511.79□□□□□ -0.524e-6■■■□□ 15
SFPQP23246 RANBP3-216ENST00000589353 490 ntTSL 510.99□□□□□ -0.654e-6■■■□□ 15
SFPQP23246 RANBP3-219ENST00000590953 571 ntTSL 310.97□□□□□ -0.654e-6■■■□□ 15
SFPQP23246 RANBP3-218ENST00000590623 786 ntTSL 58.76□□□□□ -1.014e-6■■■□□ 15
SFPQP23246 RANBP3-204ENST00000585339 566 ntTSL 48.47□□□□□ -1.054e-6■■■□□ 15
SFPQP23246 RANBP3-214ENST00000588010 568 ntTSL 54.75□□□□□ -1.654e-6■■■□□ 15
SFPQP23246 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.512e-6■■■□□ 15
SFPQP23246 PTP4A3-205ENST00000523147 558 ntTSL 523.45■■□□□ 1.342e-6■■■□□ 15
SFPQP23246 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.43■■□□□ 1.342e-6■■■□□ 15
SFPQP23246 PRKCZ-204ENST00000461106 1916 ntTSL 218.43■□□□□ 0.549e-8■■■□□ 15
SFPQP23246 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.02■□□□□ 0.489e-8■■■□□ 15
SFPQP23246 PRKCZ-221ENST00000495347 698 ntTSL 417.36■□□□□ 0.379e-8■■■□□ 15
SFPQP23246 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.827e-9■■■□□ 15
SFPQP23246 PTP4A1-202ENST00000470661 479 ntTSL 27.35□□□□□ -1.237e-9■■■□□ 15
SFPQP23246 SH3BP4-206ENST00000446904 829 ntTSL 311.56□□□□□ -0.562e-6■■■□□ 15
SFPQP23246 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.054e-6■■■□□ 15
SFPQP23246 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.092e-7■■■□□ 15
SFPQP23246 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.5■□□□□ 0.872e-7■■■□□ 15
SFPQP23246 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.61■□□□□ 0.732e-7■■■□□ 15
SFPQP23246 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.39■□□□□ 0.692e-7■■■□□ 15
SFPQP23246 PACS2-207ENST00000548265 402 ntTSL 216.92■□□□□ 0.32e-7■■■□□ 15
SFPQP23246 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -02e-7■■■□□ 15
SFPQP23246 MIPOL1-209ENST00000554930 1377 ntTSL 514.44□□□□□ -0.12e-7■■■□□ 15
SFPQP23246 RPRD2-204ENST00000492220 4780 ntTSL 514.02□□□□□ -0.162e-7■■■□□ 15
SFPQP23246 RPRD2-202ENST00000369068 4612 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.382e-7■■■□□ 15
SFPQP23246 RPRD2-203ENST00000401000 7605 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.542e-7■■■□□ 15
SFPQP23246 MIPOL1-202ENST00000396294 6258 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.652e-7■■■□□ 15
SFPQP23246 MIPOL1-211ENST00000556451 2282 ntTSL 1 (best) BASIC9.49□□□□□ -0.892e-7■■■□□ 15
SFPQP23246 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.172e-7■■■□□ 15
SFPQP23246 MIPOL1-210ENST00000555870 7434 ntTSL 1 (best)6.9□□□□□ -1.32e-7■■■□□ 15
SFPQP23246 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.25□□□□□ -1.412e-7■■■□□ 15
SFPQP23246 SORBS2-228ENST00000445343 546 ntTSL 45.76□□□□□ -1.492e-7■■■□□ 15
SFPQP23246 MIPOL1-207ENST00000553349 700 ntTSL 34.82□□□□□ -1.642e-7■■■□□ 15
SFPQP23246 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.96□□□□□ -1.782e-7■■■□□ 15
SFPQP23246 MIPOL1-214ENST00000556940 485 ntTSL 32.7□□□□□ -1.982e-7■■■□□ 15
SFPQP23246 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.122e-7■■■□□ 15
SFPQP23246 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.64■■□□□ 1.061e-6■■■□□ 15
SFPQP23246 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.91e-6■■■□□ 15
SFPQP23246 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.53■□□□□ 0.241e-6■■■□□ 15
SFPQP23246 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC8.32□□□□□ -1.081e-6■■■□□ 15
SFPQP23246 SEPT9-222ENST00000589070 582 ntTSL 320.67■□□□□ 0.96e-7■■■□□ 15
SFPQP23246 SEPT9-240ENST00000591833 576 ntTSL 416■□□□□ 0.156e-7■■■□□ 15
SFPQP23246 SIPA1L3-202ENST00000476317 608 ntTSL 321.04■□□□□ 0.963e-6■■■□□ 14.9
SFPQP23246 SHANK2-207ENST00000425049 557 ntTSL 418.56■□□□□ 0.563e-6■■■□□ 14.9
SFPQP23246 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.183e-6■■■□□ 14.9
SFPQP23246 FOXP1-209ENST00000475937 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.521e-6■■■□□ 14.9
SFPQP23246 FOXP1-203ENST00000327590 5685 ntTSL 28.46□□□□□ -1.051e-6■■■□□ 14.9
SFPQP23246 E2F3-202ENST00000535432 4425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.552e-6■■■□□ 14.9
SFPQP23246 SHANK2-208ENST00000426687 460 ntTSL 59.81□□□□□ -0.843e-6■■■□□ 14.9
SFPQP23246 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.57■■■□□ 2.487e-7■■■□□ 14.9
SFPQP23246 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.767e-7■■■□□ 14.9
SFPQP23246 ERF-206ENST00000596818 566 ntTSL 318.17■□□□□ 0.57e-7■■■□□ 14.9
SFPQP23246 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC26.13■■□□□ 1.772e-6■■■□□ 14.9
SFPQP23246 SH3BP4-209ENST00000484097 612 ntTSL 221.47■■□□□ 1.032e-7■■■□□ 14.9
SFPQP23246 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.545e-7■■■□□ 14.8
SFPQP23246 PTBP1-211ENST00000587094 273 ntTSL 312.86□□□□□ -0.355e-7■■■□□ 14.8
SFPQP23246 SOGA1-202ENST00000279034 3703 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.367e-7■■■□□ 14.8
SFPQP23246 RBMS1-211ENST00000477486 562 ntTSL 424.66■■□□□ 1.542e-6■■■□□ 14.8
SFPQP23246 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.017e-11■■■□□ 14.8
SFPQP23246 SLC16A3-204ENST00000578522 535 ntTSL 418.53■□□□□ 0.567e-11■■■□□ 14.8
SFPQP23246 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC27.69■■■□□ 2.029e-7■■■□□ 14.8
SFPQP23246 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.86■■□□□ 1.899e-7■■■□□ 14.8
Retrieved 100 of 4,991 protein–RNA pairs in 268 ms