RNA–Protein interactions for RNA: ENST00000592771.5

RANBP3-229, Transcript of RAN binding protein 3, humanhuman

TSL 1 (best)

Gene RANBP3, Length 1,937 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RANBP3-229ENST00000592771 NISCHQ9Y2I1 1504 aa31.32■■■□□ 2.6
RANBP3-229ENST00000592771 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.93
RANBP3-229ENST00000592771 ZCCHC6Q5VYS8 1495 aaKnown RBP26.41■■□□□ 1.82
RANBP3-229ENST00000592771 DCAF1Q9Y4B6 1507 aa25.92■■□□□ 1.74
RANBP3-229ENST00000592771 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
RANBP3-229ENST00000592771 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
RANBP3-229ENST00000592771 ABCC9O60706 1549 aa25.53■■□□□ 1.68
RANBP3-229ENST00000592771 MYO15BQ96JP2 1530 aa25.47■■□□□ 1.67
RANBP3-229ENST00000592771 NACADO15069 1562 aa25.17■■□□□ 1.62
RANBP3-229ENST00000592771 SCRIBQ14160 1630 aa24.98■■□□□ 1.59
RANBP3-229ENST00000592771 SUPT5HO00267 1087 aaKnown RBP24.94■■□□□ 1.58
RANBP3-229ENST00000592771 RB1CC1Q8TDY2 1594 aa24.85■■□□□ 1.57
RANBP3-229ENST00000592771 RSF1Q96T23 1441 aaPredicted RBP24.45■■□□□ 1.5
RANBP3-229ENST00000592771 UNC13AQ9UPW8 1703 aa24.42■■□□□ 1.5
RANBP3-229ENST00000592771 CECR2Q9BXF3 1484 aa24.3■■□□□ 1.48
RANBP3-229ENST00000592771 MROH2BQ7Z745 1585 aa24.21■■□□□ 1.47
RANBP3-229ENST00000592771 BICRAQ9NZM4 1560 aa24.15■■□□□ 1.46
RANBP3-229ENST00000592771 BAZ1AQ9NRL2 1556 aaPredicted RBP24.14■■□□□ 1.45
RANBP3-229ENST00000592771 CHIC1Q5VXU3 224 aa24.14■■□□□ 1.45
RANBP3-229ENST00000592771 PABPN1Q86U42 306 aaKnown RBP eCLIP24.06■■□□□ 1.448e-7■■□□□ 12.1
RANBP3-229ENST00000592771 WIZO95785 1651 aa24.03■■□□□ 1.44
RANBP3-229ENST00000592771 SMARCA4P51532 1647 aa24■■□□□ 1.43
RANBP3-229ENST00000592771 TOP2AP11388 1531 aaKnown RBP23.8■■□□□ 1.4
RANBP3-229ENST00000592771 PEG3Q9GZU2 1588 aa23.72■■□□□ 1.39
RANBP3-229ENST00000592771 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
RANBP3-229ENST00000592771 SMARCA2P51531 1590 aa23.6■■□□□ 1.37
RANBP3-229ENST00000592771 CCDC88BA6NC98 1476 aa23.55■■□□□ 1.36
RANBP3-229ENST00000592771 ATAD2BQ9ULI0 1458 aa23.5■■□□□ 1.35
RANBP3-229ENST00000592771 TRIM41Q8WV44 630 aa23.42■■□□□ 1.34
RANBP3-229ENST00000592771 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
RANBP3-229ENST00000592771 HMGXB3Q12766 1538 aa23.24■■□□□ 1.31
RANBP3-229ENST00000592771 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
RANBP3-229ENST00000592771 LOC105371045A0A1W2PR82 267 aa23.2■■□□□ 1.3
RANBP3-229ENST00000592771 ABCC8Q09428 1581 aa23.17■■□□□ 1.3
RANBP3-229ENST00000592771 HRCP23327 699 aa23.14■■□□□ 1.29
RANBP3-229ENST00000592771 CC2D2AQ9P2K1 1620 aa23.05■■□□□ 1.28
RANBP3-229ENST00000592771 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
RANBP3-229ENST00000592771 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.275e-6■■■■■ 29.2
RANBP3-229ENST00000592771 DNAJC5BQ9UF47 199 aa22.94■■□□□ 1.26
RANBP3-229ENST00000592771 PCGF6Q9BYE7 350 aa22.89■■□□□ 1.25
RANBP3-229ENST00000592771 SYNJ1O43426 1573 aa22.89■■□□□ 1.25
RANBP3-229ENST00000592771 EEA1Q15075 1411 aa22.85■■□□□ 1.25
RANBP3-229ENST00000592771 CFTRP13569 1480 aa22.83■■□□□ 1.24
RANBP3-229ENST00000592771 SOGA1O94964 1423 aa22.81■■□□□ 1.24
RANBP3-229ENST00000592771 TOP2BQ02880 1626 aa22.77■■□□□ 1.24
RANBP3-229ENST00000592771 PRDM2Q13029 1718 aa22.75■■□□□ 1.23
RANBP3-229ENST00000592771 BIVM-ERCC5R4GMW8 1640 aa22.75■■□□□ 1.23
RANBP3-229ENST00000592771 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
RANBP3-229ENST00000592771 TRIM26Q12899 539 aaPredicted RBP22.67■■□□□ 1.22
RANBP3-229ENST00000592771 CSRNP3Q8WYN3 585 aa22.66■■□□□ 1.22
RANBP3-229ENST00000592771 CADPSQ9ULU8 1353 aa22.64■■□□□ 1.22
RANBP3-229ENST00000592771 CUX1P39880 1505 aa22.62■■□□□ 1.21
RANBP3-229ENST00000592771 EHMT2Q96KQ7 1210 aa22.62■■□□□ 1.21
RANBP3-229ENST00000592771 KIF21BO75037 1637 aa22.56■■□□□ 1.2
RANBP3-229ENST00000592771 TNIKQ9UKE5 1360 aa22.56■■□□□ 1.2
RANBP3-229ENST00000592771 GOLGA3Q08378 1498 aa22.55■■□□□ 1.2
RANBP3-229ENST00000592771 CEP164Q9UPV0 1460 aa22.51■■□□□ 1.19
RANBP3-229ENST00000592771 CEP162Q5TB80 1403 aa22.46■■□□□ 1.19
RANBP3-229ENST00000592771 FANCD2Q9BXW9 1451 aa22.4■■□□□ 1.18
RANBP3-229ENST00000592771 ZEB1P37275 1124 aaPredicted RBP22.37■■□□□ 1.17
RANBP3-229ENST00000592771 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
RANBP3-229ENST00000592771 KIF27Q86VH2 1401 aa22.35■■□□□ 1.17
RANBP3-229ENST00000592771 UBTFP17480 764 aaKnown RBP22.35■■□□□ 1.17
RANBP3-229ENST00000592771 RAPGEF2Q9Y4G8 1499 aa22.34■■□□□ 1.17
RANBP3-229ENST00000592771 PRXQ9BXM0 1461 aa22.33■■□□□ 1.17
RANBP3-229ENST00000592771 ERICH3Q5RHP9 1530 aa22.33■■□□□ 1.17
RANBP3-229ENST00000592771 NESP48681 1621 aa22.33■■□□□ 1.17
RANBP3-229ENST00000592771 PPARGC1BQ86YN6 1023 aaKnown RBP22.33■■□□□ 1.16
RANBP3-229ENST00000592771 FGD5Q6ZNL6 1462 aa22.29■■□□□ 1.16
RANBP3-229ENST00000592771 DNMBPQ6XZF7 1577 aa22.28■■□□□ 1.16
RANBP3-229ENST00000592771 TOPBP1Q92547 1522 aa22.22■■□□□ 1.15
RANBP3-229ENST00000592771 CUX2O14529 1486 aa22.2■■□□□ 1.14
RANBP3-229ENST00000592771 CLIP1P30622 1438 aa22.19■■□□□ 1.14
RANBP3-229ENST00000592771 PDS5BQ9NTI5 1447 aa22.16■■□□□ 1.14
RANBP3-229ENST00000592771 POLA1P09884 1462 aaPredicted RBP22.14■■□□□ 1.13
RANBP3-229ENST00000592771 IGF1RP08069 1367 aa22.13■■□□□ 1.13
RANBP3-229ENST00000592771 URB2Q14146 1524 aaKnown RBP22.12■■□□□ 1.13
RANBP3-229ENST00000592771 ABCA10Q8WWZ4 1543 aa22.12■■□□□ 1.13
RANBP3-229ENST00000592771 KIF21AQ7Z4S6 1674 aa22.08■■□□□ 1.12
RANBP3-229ENST00000592771 VPS8Q8N3P4 1428 aa22.07■■□□□ 1.12
RANBP3-229ENST00000592771 RAD54L2Q9Y4B4 1467 aa22.05■■□□□ 1.12
RANBP3-229ENST00000592771 WDR97A6NE52 1622 aa22.04■■□□□ 1.12
RANBP3-229ENST00000592771 CARMIL1Q5VZK9 1371 aa22.01■■□□□ 1.11
RANBP3-229ENST00000592771 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
RANBP3-229ENST00000592771 ARAP1Q96P48 1450 aa21.96■■□□□ 1.11
RANBP3-229ENST00000592771 CUL7Q14999 1698 aa21.93■■□□□ 1.1
RANBP3-229ENST00000592771 ABCA5Q8WWZ7 1642 aa21.92■■□□□ 1.1
RANBP3-229ENST00000592771 ARHGAP35Q9NRY4 1499 aa21.88■■□□□ 1.09
RANBP3-229ENST00000592771 MRC2Q9UBG0 1479 aa21.88■■□□□ 1.09
RANBP3-229ENST00000592771 TARBP1Q13395 1621 aaKnown RBP21.87■■□□□ 1.09
RANBP3-229ENST00000592771 RANGAP1P46060 587 aaPredicted RBP21.84■■□□□ 1.09
RANBP3-229ENST00000592771 GAPVD1Q14C86 1478 aa21.81■■□□□ 1.08
RANBP3-229ENST00000592771 TDRD9Q8NDG6 1382 aaKnown RBP21.78■■□□□ 1.08
RANBP3-229ENST00000592771 WDR62O43379 1518 aa21.77■■□□□ 1.08
RANBP3-229ENST00000592771 TTBK1Q5TCY1 1321 aaPredicted RBP21.76■■□□□ 1.07
RANBP3-229ENST00000592771 CTTNBP2Q8WZ74 1663 aa21.74■■□□□ 1.07
RANBP3-229ENST00000592771 APLP2Q06481 763 aa21.74■■□□□ 1.07
RANBP3-229ENST00000592771 PBRM1Q86U86 1689 aa21.69■■□□□ 1.06
RANBP3-229ENST00000592771 EFCAB5A4FU69 1503 aa21.69■■□□□ 1.06
RANBP3-229ENST00000592771 THOC2Q8NI27 1593 aaKnown RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms