RNA–Protein interactions for RNA: ENST00000407417.7

NFIA-208, Transcript of nuclear factor I A, humanhuman

TSL 2 BASIC

Gene NFIA, Length 2,123 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIA-208ENST00000407417 NISCHQ9Y2I1 1504 aa18.96■□□□□ 0.63
NFIA-208ENST00000407417 CCDC180Q9P1Z9 1646 aa16.81■□□□□ 0.28
NFIA-208ENST00000407417 ABCC9O60706 1549 aa16.58■□□□□ 0.25
NFIA-208ENST00000407417 DCAF8L2P0C7V8 631 aa15.93■□□□□ 0.14
NFIA-208ENST00000407417 RB1CC1Q8TDY2 1594 aa15.87■□□□□ 0.13
NFIA-208ENST00000407417 NACADO15069 1562 aa15.83■□□□□ 0.13
NFIA-208ENST00000407417 ZCCHC6Q5VYS8 1495 aaKnown RBP15.79■□□□□ 0.12
NFIA-208ENST00000407417 MYO15BQ96JP2 1530 aa15.7■□□□□ 0.1
NFIA-208ENST00000407417 DCAF1Q9Y4B6 1507 aa15.64■□□□□ 0.09
NFIA-208ENST00000407417 PABPN1Q86U42 306 aaKnown RBP eCLIP15.52■□□□□ 0.08
NFIA-208ENST00000407417 UNC13AQ9UPW8 1703 aa15.51■□□□□ 0.07
NFIA-208ENST00000407417 SCRIBQ14160 1630 aa15.42■□□□□ 0.06
NFIA-208ENST00000407417 BICRAQ9NZM4 1560 aa15.42■□□□□ 0.06
NFIA-208ENST00000407417 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
NFIA-208ENST00000407417 SHROOM4Q9ULL8 1493 aa15.18■□□□□ 0.02
NFIA-208ENST00000407417 EIF4G1Q04637 1599 aaKnown RBP15.01□□□□□ -0.01
NFIA-208ENST00000407417 CC2D2AQ9P2K1 1620 aa14.97□□□□□ -0.01
NFIA-208ENST00000407417 CECR2Q9BXF3 1484 aa14.88□□□□□ -0.03
NFIA-208ENST00000407417 SMARCA4P51532 1647 aa14.71□□□□□ -0.05
NFIA-208ENST00000407417 BAZ1AQ9NRL2 1556 aaPredicted RBP14.67□□□□□ -0.06
NFIA-208ENST00000407417 ATAD2BQ9ULI0 1458 aa14.66□□□□□ -0.06
NFIA-208ENST00000407417 MROH2BQ7Z745 1585 aa14.64□□□□□ -0.07
NFIA-208ENST00000407417 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
NFIA-208ENST00000407417 SMARCA2P51531 1590 aa14.6□□□□□ -0.07
NFIA-208ENST00000407417 HMGXB3Q12766 1538 aa14.54□□□□□ -0.08
NFIA-208ENST00000407417 PEG3Q9GZU2 1588 aa14.54□□□□□ -0.08
NFIA-208ENST00000407417 BAZ1BQ9UIG0 1483 aaKnown RBP14.53□□□□□ -0.08
NFIA-208ENST00000407417 PELP1Q8IZL8 1130 aaKnown RBP14.47□□□□□ -0.09
NFIA-208ENST00000407417 WIZO95785 1651 aa14.47□□□□□ -0.09
NFIA-208ENST00000407417 RSF1Q96T23 1441 aaPredicted RBP14.46□□□□□ -0.1
NFIA-208ENST00000407417 NESP48681 1621 aa14.35□□□□□ -0.11
NFIA-208ENST00000407417 TOP2AP11388 1531 aaKnown RBP14.3□□□□□ -0.12
NFIA-208ENST00000407417 ERCC6Q03468 1493 aa14.27□□□□□ -0.13
NFIA-208ENST00000407417 LAMC3Q9Y6N6 1575 aa14.23□□□□□ -0.13
NFIA-208ENST00000407417 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
NFIA-208ENST00000407417 HRCP23327 699 aa14.17□□□□□ -0.14
NFIA-208ENST00000407417 MYT1Q01538 1121 aa14.15□□□□□ -0.14
NFIA-208ENST00000407417 CCDC88BA6NC98 1476 aa14.15□□□□□ -0.14
NFIA-208ENST00000407417 PDS5BQ9NTI5 1447 aa14.15□□□□□ -0.14
NFIA-208ENST00000407417 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
NFIA-208ENST00000407417 CFTRP13569 1480 aa14.12□□□□□ -0.15
NFIA-208ENST00000407417 SUPT5HO00267 1087 aaKnown RBP14.11□□□□□ -0.15
NFIA-208ENST00000407417 CUX2O14529 1486 aa14.1□□□□□ -0.15
NFIA-208ENST00000407417 THOC2Q8NI27 1593 aaKnown RBP14.09□□□□□ -0.15
NFIA-208ENST00000407417 DNAJC5Q9H3Z4 198 aa14.09□□□□□ -0.15
NFIA-208ENST00000407417 FANCD2Q9BXW9 1451 aa14.07□□□□□ -0.16
NFIA-208ENST00000407417 CEP164Q9UPV0 1460 aa14.04□□□□□ -0.16
NFIA-208ENST00000407417 MRC2Q9UBG0 1479 aa14.02□□□□□ -0.16
NFIA-208ENST00000407417 WDR62O43379 1518 aa13.97□□□□□ -0.17
NFIA-208ENST00000407417 PRDM2Q13029 1718 aa13.95□□□□□ -0.18
NFIA-208ENST00000407417 URB2Q14146 1524 aaKnown RBP13.94□□□□□ -0.18
NFIA-208ENST00000407417 TOPBP1Q92547 1522 aa13.84□□□□□ -0.19
NFIA-208ENST00000407417 DNMBPQ6XZF7 1577 aa13.79□□□□□ -0.2
NFIA-208ENST00000407417 ABCC8Q09428 1581 aa13.78□□□□□ -0.2
NFIA-208ENST00000407417 IFT140Q96RY7 1462 aa13.74□□□□□ -0.21
NFIA-208ENST00000407417 CUX1P39880 1505 aa13.73□□□□□ -0.21
NFIA-208ENST00000407417 ZNF608Q9ULD9 1512 aaPredicted RBP13.72□□□□□ -0.21
NFIA-208ENST00000407417 POLA1P09884 1462 aaPredicted RBP13.72□□□□□ -0.21
NFIA-208ENST00000407417 FGD5Q6ZNL6 1462 aa13.69□□□□□ -0.22
NFIA-208ENST00000407417 RAD54L2Q9Y4B4 1467 aa13.69□□□□□ -0.22
NFIA-208ENST00000407417 TARBP1Q13395 1621 aaKnown RBP13.67□□□□□ -0.22
NFIA-208ENST00000407417 SOGA1O94964 1423 aa13.66□□□□□ -0.22
NFIA-208ENST00000407417 AQRO60306 1485 aaKnown RBP eCLIP13.65□□□□□ -0.231e-7■■□□□ 12.1
NFIA-208ENST00000407417 EIF4G3O43432 1585 aaKnown RBP13.63□□□□□ -0.23
NFIA-208ENST00000407417 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
NFIA-208ENST00000407417 WRNQ14191 1432 aaPredicted RBP eCLIP13.61□□□□□ -0.23
NFIA-208ENST00000407417 SYNJ1O43426 1573 aa13.6□□□□□ -0.23
NFIA-208ENST00000407417 TOP2BQ02880 1626 aa13.57□□□□□ -0.24
NFIA-208ENST00000407417 BIVM-ERCC5R4GMW8 1640 aa13.56□□□□□ -0.24
NFIA-208ENST00000407417 OSCARQ8IYS5 282 aa13.54□□□□□ -0.24
NFIA-208ENST00000407417 WDR97A6NE52 1622 aa13.53□□□□□ -0.24
NFIA-208ENST00000407417 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
NFIA-208ENST00000407417 SNAPC4Q5SXM2 1469 aa13.51□□□□□ -0.25
NFIA-208ENST00000407417 FBLN2P98095 1184 aa13.5□□□□□ -0.25
NFIA-208ENST00000407417 GAPVD1Q14C86 1478 aa13.5□□□□□ -0.25
NFIA-208ENST00000407417 GRIN2BQ13224 1484 aa13.49□□□□□ -0.25
NFIA-208ENST00000407417 ABCA5Q8WWZ7 1642 aa13.47□□□□□ -0.25
NFIA-208ENST00000407417 PPARGC1BQ86YN6 1023 aaKnown RBP13.47□□□□□ -0.25
NFIA-208ENST00000407417 PCGF6Q9BYE7 350 aa13.47□□□□□ -0.25
NFIA-208ENST00000407417 TTBK1Q5TCY1 1321 aaPredicted RBP13.47□□□□□ -0.25
NFIA-208ENST00000407417 CHD1O14646 1710 aa13.46□□□□□ -0.25
NFIA-208ENST00000407417 PBRM1Q86U86 1689 aa13.45□□□□□ -0.26
NFIA-208ENST00000407417 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
NFIA-208ENST00000407417 SCAF1Q9H7N4 1312 aaKnown RBP13.43□□□□□ -0.26
NFIA-208ENST00000407417 CHMP7Q8WUX9 453 aaPredicted RBP13.43□□□□□ -0.26
NFIA-208ENST00000407417 ZEB1P37275 1124 aaPredicted RBP13.42□□□□□ -0.26
NFIA-208ENST00000407417 SYNJ2O15056 1496 aa13.4□□□□□ -0.26
NFIA-208ENST00000407417 TRIM41Q8WV44 630 aa13.36□□□□□ -0.27
NFIA-208ENST00000407417 ADAMTS12P58397 1594 aa13.36□□□□□ -0.27
NFIA-208ENST00000407417 ERICH3Q5RHP9 1530 aa13.35□□□□□ -0.27
NFIA-208ENST00000407417 FHAD1B1AJZ9 1412 aa13.34□□□□□ -0.27
NFIA-208ENST00000407417 KIF27Q86VH2 1401 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 GRIN2AQ12879 1464 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 RIMBP3CA6NJZ7 1639 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 RIMBP3BA6NNM3 1639 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 RIMBP3Q9UFD9 1639 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 ARHGEF11O15085 1522 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 CLASP1Q7Z460 1538 aa13.32□□□□□ -0.28
NFIA-208ENST00000407417 IGF1RP08069 1367 aa13.3□□□□□ -0.28
NFIA-208ENST00000407417 AEBP2Q6ZN18 517 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms