Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FLOT1-208ENST00000470643 852 ntTSL 323.69■■□□□ 1.384e-7■■■■■ 96.4
SF3B1O75533 FLOT1-204ENST00000418160 457 ntTSL 316.9■□□□□ 0.34e-7■■■■■ 96.4
SF3B1O75533 FLOT1-207ENST00000454845 629 ntTSL 316.41■□□□□ 0.224e-7■■■■■ 96.4
SF3B1O75533 STEAP1B-204ENST00000439708 797 ntTSL 34.33□□□□□ -1.725e-6■■■■■ 96.4
SF3B1O75533 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.44□□□□□ -1.865e-6■■■■■ 96.4
SF3B1O75533 APOO-204ENST00000490078 916 ntTSL 1 (best)22.2■■□□□ 1.145e-6■■■■■ 96.3
SF3B1O75533 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.495e-6■■■■■ 96.3
SF3B1O75533 TANGO2-220ENST00000475446 557 ntTSL 415.34■□□□□ 0.052e-6■■■■■ 96.3
SF3B1O75533 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.22e-6■■■■■ 96.3
SF3B1O75533 MAPK14-208ENST00000491957 2777 ntTSL 1 (best)7.26□□□□□ -1.254e-6■■■■■ 96.3
SF3B1O75533 MAPK14-209ENST00000496250 2750 ntTSL 1 (best)7.22□□□□□ -1.254e-6■■■■■ 96.3
SF3B1O75533 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.43■■□□□ 1.823e-6■■■■■ 96.3
SF3B1O75533 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.713e-6■■■■■ 96.3
SF3B1O75533 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.23e-6■■■■■ 96.3
SF3B1O75533 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.64□□□□□ -0.233e-6■■■■■ 96.3
SF3B1O75533 RIC8A-212ENST00000530149 3417 nt9.88□□□□□ -0.839e-7■■■■■ 96.3
SF3B1O75533 MSI2-214ENST00000581776 493 ntTSL 26.28□□□□□ -1.41e-6■■■■■ 96.3
SF3B1O75533 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.314e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-207ENST00000595773 546 ntTSL 518.03■□□□□ 0.483e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-209ENST00000599972 498 ntTSL 216.43■□□□□ 0.223e-6■■■■■ 96.2
SF3B1O75533 AGAP3-215ENST00000478320 664 ntTSL 211.45□□□□□ -0.582e-6■■■■■ 96.2
SF3B1O75533 UFD1-210ENST00000494054 588 ntTSL 510.71□□□□□ -0.692e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-206ENST00000595687 3472 ntAPPRIS P3 TSL 2 BASIC9.77□□□□□ -0.843e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-201ENST00000340963 3674 ntAPPRIS P3 TSL 2 BASIC9.74□□□□□ -0.853e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-202ENST00000414720 2396 ntTSL 2 BASIC9.01□□□□□ -0.973e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.8□□□□□ -1.323e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-211ENST00000601715 446 ntTSL 26.03□□□□□ -1.443e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.463e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.483e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-208ENST00000599368 665 ntTSL 25.57□□□□□ -1.523e-6■■■■■ 96.2
SF3B1O75533 ZNF780A-210ENST00000601688 467 ntTSL 1 (best)4.09□□□□□ -1.753e-6■■■■■ 96.2
SF3B1O75533 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.327e-7■■■■■ 96.2
SF3B1O75533 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC14.32□□□□□ -0.124e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-202ENST00000535593 813 ntTSL 1 (best)9.09□□□□□ -0.954e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC7.68□□□□□ -1.184e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-207ENST00000542194 562 ntTSL 37.03□□□□□ -1.284e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.324e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-204ENST00000539663 876 ntTSL 36.42□□□□□ -1.384e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-208ENST00000545093 700 ntTSL 26.25□□□□□ -1.414e-7■■■■■ 96.1
SF3B1O75533 GOLT1B-203ENST00000539025 1210 ntTSL 1 (best)6.23□□□□□ -1.414e-7■■■■■ 96.1
SF3B1O75533 TCF4-261ENST00000627784 601 ntTSL 418.72■□□□□ 0.592e-6■■■■■ 96.1
SF3B1O75533 TCF4-243ENST00000569357 585 ntTSL 510.13□□□□□ -0.792e-6■■■■■ 96.1
SF3B1O75533 TCF4-221ENST00000563888 570 ntTSL 48.02□□□□□ -1.132e-6■■■■■ 96.1
SF3B1O75533 TCF4-237ENST00000568147 550 ntTSL 46.56□□□□□ -1.362e-6■■■■■ 96.1
SF3B1O75533 TCF4-213ENST00000562543 598 ntTSL 1 (best)6.54□□□□□ -1.362e-6■■■■■ 96.1
SF3B1O75533 TCF4-220ENST00000563824 897 ntTSL 46.01□□□□□ -1.452e-6■■■■■ 96.1
SF3B1O75533 TCF4-223ENST00000564343 568 ntTSL 45.69□□□□□ -1.52e-6■■■■■ 96.1
SF3B1O75533 TCF4-217ENST00000562847 597 ntTSL 34.44□□□□□ -1.72e-6■■■■■ 96.1
SF3B1O75533 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.855e-6■■■■■ 96.1
SF3B1O75533 GMDS-201ENST00000380805 1743 ntTSL 219.99■□□□□ 0.795e-6■■■■■ 96.1
SF3B1O75533 UBE2F-217ENST00000448502 561 ntTSL 422.42■■□□□ 1.182e-6■■■■■ 96.1
SF3B1O75533 UBE2F-206ENST00000416292 552 ntTSL 222.38■■□□□ 1.172e-6■■■■■ 96.1
SF3B1O75533 UBE2F-212ENST00000439338 873 ntTSL 522.38■■□□□ 1.172e-6■■■■■ 96.1
SF3B1O75533 UBE2F-215ENST00000441728 1242 ntTSL 222.12■■□□□ 1.132e-6■■■■■ 96.1
SF3B1O75533 UBE2F-207ENST00000417231 984 ntTSL 521.76■■□□□ 1.072e-6■■■■■ 96.1
SF3B1O75533 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.45■■□□□ 1.022e-6■■■■■ 96.1
SF3B1O75533 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.942e-6■■■■■ 96.1
SF3B1O75533 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.31■□□□□ 0.842e-6■■■■■ 96.1
SF3B1O75533 UBE2F-218ENST00000454786 1292 ntTSL 519.06■□□□□ 0.642e-6■■■■■ 96.1
SF3B1O75533 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.05■□□□□ 0.482e-6■■■■■ 96.1
SF3B1O75533 UBE2F-214ENST00000440223 830 ntTSL 317.15■□□□□ 0.342e-6■■■■■ 96.1
SF3B1O75533 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.74■□□□□ 0.274e-7■■■■■ 96.1
SF3B1O75533 UBE2F-216ENST00000445676 831 ntTSL 316.45■□□□□ 0.222e-6■■■■■ 96.1
SF3B1O75533 UBE2F-219ENST00000455999 760 ntTSL 516.44■□□□□ 0.222e-6■■■■■ 96.1
SF3B1O75533 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.132e-6■■■■■ 96.1
SF3B1O75533 UBE2F-SCLY-202ENST00000449891 2902 ntAPPRIS ALT2 TSL 213.48□□□□□ -0.252e-6■■■■■ 96.1
SF3B1O75533 OGDH-203ENST00000439616 2962 ntTSL 2 BASIC13.37□□□□□ -0.274e-7■■■■■ 96.1
SF3B1O75533 UBE2F-213ENST00000439780 571 ntTSL 511.35□□□□□ -0.592e-6■■■■■ 96.1
SF3B1O75533 OGDH-205ENST00000444676 3309 ntTSL 5 BASIC11.27□□□□□ -0.614e-7■■■■■ 96.1
SF3B1O75533 UBE2F-208ENST00000433241 803 ntTSL 211.01□□□□□ -0.652e-6■■■■■ 96.1
SF3B1O75533 UBE2F-210ENST00000434137 472 ntTSL 511.01□□□□□ -0.652e-6■■■■■ 96.1
SF3B1O75533 UBE2F-SCLY-201ENST00000449191 951 ntAPPRIS P5 TSL 3 BASIC11□□□□□ -0.652e-6■■■■■ 96.1
SF3B1O75533 OGDH-207ENST00000449767 3479 ntAPPRIS ALT1 TSL 2 BASIC10.32□□□□□ -0.764e-7■■■■■ 96.1
SF3B1O75533 OGDH-206ENST00000447398 3474 ntTSL 5 BASIC10.19□□□□□ -0.784e-7■■■■■ 96.1
SF3B1O75533 UBE2F-211ENST00000434655 648 ntTSL 510.07□□□□□ -0.82e-6■■■■■ 96.1
SF3B1O75533 OGDH-202ENST00000419661 789 ntTSL 59.28□□□□□ -0.924e-7■■■■■ 96.1
SF3B1O75533 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC7.86□□□□□ -1.152e-6■■■■■ 96.1
SF3B1O75533 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.282e-6■■■■■ 96
SF3B1O75533 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.052e-6■■■■■ 96
SF3B1O75533 FLOT1-202ENST00000413165 856 ntTSL 522.12■■□□□ 1.131e-6■■■■■ 96
SF3B1O75533 HDAC8-214ENST00000439122 2338 ntTSL 2 BASIC12.46□□□□□ -0.412e-6■■■■■ 96
SF3B1O75533 TXNDC16-201ENST00000281741 4564 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.467e-7■■■■■ 96
SF3B1O75533 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.224e-6■■■■■ 96
SF3B1O75533 CDC14B-209ENST00000474602 4960 ntTSL 1 (best)22.5■■□□□ 1.194e-6■■■■■ 96
SF3B1O75533 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.834e-6■■■■■ 96
SF3B1O75533 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC14.05□□□□□ -0.164e-6■■■■■ 96
SF3B1O75533 CDC14B-204ENST00000412285 5271 ntTSL 1 (best)9.81□□□□□ -0.844e-6■■■■■ 96
SF3B1O75533 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.88■□□□□ 0.292e-6■■■■■ 96
SF3B1O75533 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.082e-6■■■■■ 96
SF3B1O75533 PLEKHA5-203ENST00000429027 4762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.313e-6■■■■■ 96
SF3B1O75533 PLEKHA5-213ENST00000538714 6487 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.883e-6■■■■■ 96
SF3B1O75533 PLEKHA5-215ENST00000539256 3357 ntTSL 2 BASIC8.63□□□□□ -1.033e-6■■■■■ 96
SF3B1O75533 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.173e-6■■■■■ 96
SF3B1O75533 BRD4-205ENST00000594841 1821 ntAPPRIS ALT2 TSL 1 (best)14.81□□□□□ -0.043e-7■■■■■ 96
SF3B1O75533 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.224e-7■■■■■ 96
SF3B1O75533 CHERP-202ENST00000544299 1755 ntTSL 218.99■□□□□ 0.633e-6■■■■■ 96
SF3B1O75533 SS18-211ENST00000578954 756 ntTSL 317.21■□□□□ 0.344e-6■■■■■ 96
SF3B1O75533 SS18-226ENST00000585241 774 ntTSL 517.21■□□□□ 0.344e-6■■■■■ 96
SF3B1O75533 SS18-206ENST00000577572 510 ntTSL 416.25■□□□□ 0.194e-6■■■■■ 96
SF3B1O75533 SS18-212ENST00000579061 646 ntTSL 316.24■□□□□ 0.194e-6■■■■■ 96
Retrieved 100 of 46,956 protein–RNA pairs in 1253.7 ms