RNA–Protein interactions for RNA: ENST00000494054.1

UFD1-210, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 5

Gene UFD1, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-210ENST00000494054 NISCHQ9Y2I1 1504 aa24.22■■□□□ 1.47
UFD1-210ENST00000494054 CCDC180Q9P1Z9 1646 aa21.6■■□□□ 1.05
UFD1-210ENST00000494054 ABCC9O60706 1549 aa21.5■■□□□ 1.03
UFD1-210ENST00000494054 RB1CC1Q8TDY2 1594 aa20.49■□□□□ 0.87
UFD1-210ENST00000494054 DCAF8L2P0C7V8 631 aa20.41■□□□□ 0.86
UFD1-210ENST00000494054 NACADO15069 1562 aa20.4■□□□□ 0.86
UFD1-210ENST00000494054 MYO15BQ96JP2 1530 aa20.17■□□□□ 0.82
UFD1-210ENST00000494054 ZCCHC6Q5VYS8 1495 aaKnown RBP20.1■□□□□ 0.81
UFD1-210ENST00000494054 PABPN1Q86U42 306 aaKnown RBP eCLIP20.08■□□□□ 0.81
UFD1-210ENST00000494054 DNAJC5BQ9UF47 199 aa20.08■□□□□ 0.81
UFD1-210ENST00000494054 UNC13AQ9UPW8 1703 aa20.03■□□□□ 0.8
UFD1-210ENST00000494054 DCAF1Q9Y4B6 1507 aa19.99■□□□□ 0.79
UFD1-210ENST00000494054 BICRAQ9NZM4 1560 aa19.93■□□□□ 0.78
UFD1-210ENST00000494054 SCRIBQ14160 1630 aa19.73■□□□□ 0.75
UFD1-210ENST00000494054 SHROOM4Q9ULL8 1493 aa19.6■□□□□ 0.73
UFD1-210ENST00000494054 EIF4G1Q04637 1599 aaKnown RBP19.4■□□□□ 0.7
UFD1-210ENST00000494054 CC2D2AQ9P2K1 1620 aa19.4■□□□□ 0.7
UFD1-210ENST00000494054 CECR2Q9BXF3 1484 aa19.34■□□□□ 0.69
UFD1-210ENST00000494054 NCAPD3P42695 1498 aa18.86■□□□□ 0.61
UFD1-210ENST00000494054 SMARCA4P51532 1647 aa18.84■□□□□ 0.61
UFD1-210ENST00000494054 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
UFD1-210ENST00000494054 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
UFD1-210ENST00000494054 SMARCA2P51531 1590 aa18.75■□□□□ 0.59
UFD1-210ENST00000494054 HMGXB3Q12766 1538 aa18.7■□□□□ 0.58
UFD1-210ENST00000494054 MROH2BQ7Z745 1585 aa18.68■□□□□ 0.58
UFD1-210ENST00000494054 PEG3Q9GZU2 1588 aa18.64■□□□□ 0.58
UFD1-210ENST00000494054 BAZ1BQ9UIG0 1483 aaKnown RBP18.64■□□□□ 0.57
UFD1-210ENST00000494054 NESP48681 1621 aa18.53■□□□□ 0.56
UFD1-210ENST00000494054 ERCC6Q03468 1493 aa18.51■□□□□ 0.55
UFD1-210ENST00000494054 WIZO95785 1651 aa18.45■□□□□ 0.54
UFD1-210ENST00000494054 CUX2O14529 1486 aa18.4■□□□□ 0.54
UFD1-210ENST00000494054 LAMC3Q9Y6N6 1575 aa18.37■□□□□ 0.53
UFD1-210ENST00000494054 RSF1Q96T23 1441 aaPredicted RBP18.36■□□□□ 0.53
UFD1-210ENST00000494054 DNAJC5Q9H3Z4 198 aa18.31■□□□□ 0.52
UFD1-210ENST00000494054 CADPSQ9ULU8 1353 aa18.3■□□□□ 0.52
UFD1-210ENST00000494054 PDS5BQ9NTI5 1447 aa18.27■□□□□ 0.52
UFD1-210ENST00000494054 THOC2Q8NI27 1593 aaKnown RBP18.26■□□□□ 0.51
UFD1-210ENST00000494054 KIF21AQ7Z4S6 1674 aa18.25■□□□□ 0.51
UFD1-210ENST00000494054 TOP2AP11388 1531 aaKnown RBP18.22■□□□□ 0.51
UFD1-210ENST00000494054 CFTRP13569 1480 aa18.13■□□□□ 0.49
UFD1-210ENST00000494054 MRC2Q9UBG0 1479 aa18.11■□□□□ 0.49
UFD1-210ENST00000494054 FANCD2Q9BXW9 1451 aa18.08■□□□□ 0.49
UFD1-210ENST00000494054 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
UFD1-210ENST00000494054 WDR62O43379 1518 aa18.06■□□□□ 0.48
UFD1-210ENST00000494054 CCDC88BA6NC98 1476 aa18.04■□□□□ 0.48
UFD1-210ENST00000494054 URB2Q14146 1524 aaKnown RBP17.93■□□□□ 0.46
UFD1-210ENST00000494054 PRDM2Q13029 1718 aa17.89■□□□□ 0.45
UFD1-210ENST00000494054 TOPBP1Q92547 1522 aa17.76■□□□□ 0.43
UFD1-210ENST00000494054 SUPT5HO00267 1087 aaKnown RBP17.71■□□□□ 0.43
UFD1-210ENST00000494054 IFT140Q96RY7 1462 aa17.7■□□□□ 0.42
UFD1-210ENST00000494054 ZNF608Q9ULD9 1512 aaPredicted RBP17.7■□□□□ 0.42
UFD1-210ENST00000494054 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
UFD1-210ENST00000494054 DNMBPQ6XZF7 1577 aa17.69■□□□□ 0.42
UFD1-210ENST00000494054 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
UFD1-210ENST00000494054 POLA1P09884 1462 aaPredicted RBP17.6■□□□□ 0.41
UFD1-210ENST00000494054 TARBP1Q13395 1621 aaKnown RBP17.59■□□□□ 0.41
UFD1-210ENST00000494054 AQRO60306 1485 aaKnown RBP eCLIP17.56■□□□□ 0.41e-10■■■■■ 27.7
UFD1-210ENST00000494054 EIF4G3O43432 1585 aaKnown RBP17.56■□□□□ 0.4
UFD1-210ENST00000494054 RAD54L2Q9Y4B4 1467 aa17.56■□□□□ 0.4
UFD1-210ENST00000494054 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
UFD1-210ENST00000494054 SOGA1O94964 1423 aa17.53■□□□□ 0.4
UFD1-210ENST00000494054 CUX1P39880 1505 aa17.52■□□□□ 0.4
UFD1-210ENST00000494054 FGD5Q6ZNL6 1462 aa17.51■□□□□ 0.39
UFD1-210ENST00000494054 TDRD9Q8NDG6 1382 aaKnown RBP17.49■□□□□ 0.39
UFD1-210ENST00000494054 FBLN2P98095 1184 aa17.41■□□□□ 0.38
UFD1-210ENST00000494054 CHD1O14646 1710 aa17.4■□□□□ 0.38
UFD1-210ENST00000494054 WDR97A6NE52 1622 aa17.36■□□□□ 0.37
UFD1-210ENST00000494054 RIMBP3CA6NJZ7 1639 aa17.36■□□□□ 0.37
UFD1-210ENST00000494054 RIMBP3BA6NNM3 1639 aa17.36■□□□□ 0.37
UFD1-210ENST00000494054 RIMBP3Q9UFD9 1639 aa17.36■□□□□ 0.37
UFD1-210ENST00000494054 SNAPC4Q5SXM2 1469 aa17.36■□□□□ 0.37
UFD1-210ENST00000494054 ARHGEF11O15085 1522 aa17.34■□□□□ 0.37
UFD1-210ENST00000494054 GRIN2BQ13224 1484 aa17.33■□□□□ 0.37
UFD1-210ENST00000494054 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
UFD1-210ENST00000494054 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
UFD1-210ENST00000494054 CHMP7Q8WUX9 453 aaPredicted RBP17.3■□□□□ 0.36
UFD1-210ENST00000494054 MAGI1Q96QZ7 1491 aaPredicted RBP17.3■□□□□ 0.36
UFD1-210ENST00000494054 WRNQ14191 1432 aaPredicted RBP eCLIP17.3■□□□□ 0.36
UFD1-210ENST00000494054 SYNJ1O43426 1573 aa17.28■□□□□ 0.36
UFD1-210ENST00000494054 TOP2BQ02880 1626 aa17.27■□□□□ 0.36
UFD1-210ENST00000494054 ABCA5Q8WWZ7 1642 aa17.26■□□□□ 0.35
UFD1-210ENST00000494054 BIVM-ERCC5R4GMW8 1640 aa17.26■□□□□ 0.35
UFD1-210ENST00000494054 SYNJ2O15056 1496 aa17.25■□□□□ 0.35
UFD1-210ENST00000494054 PBRM1Q86U86 1689 aa17.25■□□□□ 0.35
UFD1-210ENST00000494054 CYB5RLQ6IPT4 315 aa17.24■□□□□ 0.35
UFD1-210ENST00000494054 CLASP1Q7Z460 1538 aa17.21■□□□□ 0.35
UFD1-210ENST00000494054 ARAP1Q96P48 1450 aa17.19■□□□□ 0.34
UFD1-210ENST00000494054 GRIN2AQ12879 1464 aa17.12■□□□□ 0.33
UFD1-210ENST00000494054 ADAMTS12P58397 1594 aa17.11■□□□□ 0.33
UFD1-210ENST00000494054 FHAD1B1AJZ9 1412 aa17.09■□□□□ 0.33
UFD1-210ENST00000494054 ERICH3Q5RHP9 1530 aa17.08■□□□□ 0.32
UFD1-210ENST00000494054 CEP170Q5SW79 1584 aa17.06■□□□□ 0.32
UFD1-210ENST00000494054 NUP160Q12769 1436 aa17.05■□□□□ 0.32
UFD1-210ENST00000494054 ERCC6L2Q5T890 1561 aa17■□□□□ 0.31
UFD1-210ENST00000494054 TRHP20396 242 aaPredicted RBP16.97■□□□□ 0.31
UFD1-210ENST00000494054 IGF1RP08069 1367 aa16.96■□□□□ 0.31
UFD1-210ENST00000494054 SHROOM2Q13796 1616 aa16.95■□□□□ 0.3
UFD1-210ENST00000494054 KIF27Q86VH2 1401 aa16.95■□□□□ 0.3
UFD1-210ENST00000494054 JPH4Q96JJ6 628 aa16.91■□□□□ 0.3
UFD1-210ENST00000494054 PRG4Q92954 1404 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms