RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 NISCHQ9Y2I1 1504 aa36.46■■■■□ 3.43
SS18-212ENST00000579061 CCDC180Q9P1Z9 1646 aa32.56■■■□□ 2.8
SS18-212ENST00000579061 ABCC9O60706 1549 aa31.95■■■□□ 2.7
SS18-212ENST00000579061 RB1CC1Q8TDY2 1594 aa30.71■■■□□ 2.51
SS18-212ENST00000579061 NACADO15069 1562 aa30.65■■■□□ 2.5
SS18-212ENST00000579061 DCAF8L2P0C7V8 631 aa30.45■■■□□ 2.47
SS18-212ENST00000579061 MYO15BQ96JP2 1530 aa30.44■■■□□ 2.46
SS18-212ENST00000579061 ZCCHC6Q5VYS8 1495 aaKnown RBP30.32■■■□□ 2.44
SS18-212ENST00000579061 DCAF1Q9Y4B6 1507 aa30.22■■■□□ 2.43
SS18-212ENST00000579061 UNC13AQ9UPW8 1703 aa30.02■■■□□ 2.4
SS18-212ENST00000579061 PABPN1Q86U42 306 aaKnown RBP eCLIP29.78■■■□□ 2.36
SS18-212ENST00000579061 BICRAQ9NZM4 1560 aa29.77■■■□□ 2.36
SS18-212ENST00000579061 SCRIBQ14160 1630 aa29.6■■■□□ 2.33
SS18-212ENST00000579061 SHROOM4Q9ULL8 1493 aa29.52■■■□□ 2.32
SS18-212ENST00000579061 DNAJC5BQ9UF47 199 aa29.5■■■□□ 2.31
SS18-212ENST00000579061 EIF4G1Q04637 1599 aaKnown RBP29.01■■■□□ 2.23
SS18-212ENST00000579061 CC2D2AQ9P2K1 1620 aa28.93■■■□□ 2.22
SS18-212ENST00000579061 CECR2Q9BXF3 1484 aa28.76■■■□□ 2.19
SS18-212ENST00000579061 SMARCA4P51532 1647 aa28.33■■■□□ 2.13
SS18-212ENST00000579061 BAZ1AQ9NRL2 1556 aaPredicted RBP28.28■■■□□ 2.12
SS18-212ENST00000579061 NCAPD3P42695 1498 aa28.27■■■□□ 2.12
SS18-212ENST00000579061 ATAD2BQ9ULI0 1458 aa28.23■■■□□ 2.11
SS18-212ENST00000579061 SMARCA2P51531 1590 aa28.21■■■□□ 2.11
SS18-212ENST00000579061 HMGXB3Q12766 1538 aa28.13■■■□□ 2.09
SS18-212ENST00000579061 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
SS18-212ENST00000579061 MROH2BQ7Z745 1585 aa28.06■■■□□ 2.08
SS18-212ENST00000579061 BAZ1BQ9UIG0 1483 aaKnown RBP27.98■■■□□ 2.07
SS18-212ENST00000579061 WIZO95785 1651 aa27.75■■■□□ 2.03
SS18-212ENST00000579061 RSF1Q96T23 1441 aaPredicted RBP27.67■■■□□ 2.02
SS18-212ENST00000579061 NESP48681 1621 aa27.58■■■□□ 2.01
SS18-212ENST00000579061 LAMC3Q9Y6N6 1575 aa27.57■■■□□ 2
SS18-212ENST00000579061 ERCC6Q03468 1493 aa27.57■■■□□ 2
SS18-212ENST00000579061 TOP2AP11388 1531 aaKnown RBP27.47■■□□□ 1.99
SS18-212ENST00000579061 CADPSQ9ULU8 1353 aa27.42■■□□□ 1.98
SS18-212ENST00000579061 CUX2O14529 1486 aa27.41■■□□□ 1.98
SS18-212ENST00000579061 PDS5BQ9NTI5 1447 aa27.37■■□□□ 1.97
SS18-212ENST00000579061 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
SS18-212ENST00000579061 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.96
SS18-212ENST00000579061 CFTRP13569 1480 aa27.21■■□□□ 1.95
SS18-212ENST00000579061 CCDC88BA6NC98 1476 aa27.13■■□□□ 1.93
SS18-212ENST00000579061 FANCD2Q9BXW9 1451 aa27.08■■□□□ 1.93
SS18-212ENST00000579061 MRC2Q9UBG0 1479 aa27.08■■□□□ 1.93
SS18-212ENST00000579061 CEP164Q9UPV0 1460 aa27.07■■□□□ 1.92
SS18-212ENST00000579061 PRDM2Q13029 1718 aa27.05■■□□□ 1.92
SS18-212ENST00000579061 WDR62O43379 1518 aa27.01■■□□□ 1.91
SS18-212ENST00000579061 URB2Q14146 1524 aaKnown RBP26.82■■□□□ 1.88
SS18-212ENST00000579061 DNAJC5Q9H3Z4 198 aa26.78■■□□□ 1.88
SS18-212ENST00000579061 SUPT5HO00267 1087 aaKnown RBP26.75■■□□□ 1.87
SS18-212ENST00000579061 ABCC8Q09428 1581 aa26.67■■□□□ 1.86
SS18-212ENST00000579061 TOPBP1Q92547 1522 aa26.64■■□□□ 1.85
SS18-212ENST00000579061 DNMBPQ6XZF7 1577 aa26.6■■□□□ 1.85
SS18-212ENST00000579061 IFT140Q96RY7 1462 aa26.54■■□□□ 1.84
SS18-212ENST00000579061 POLA1P09884 1462 aaPredicted RBP26.39■■□□□ 1.82
SS18-212ENST00000579061 ZNF608Q9ULD9 1512 aaPredicted RBP26.38■■□□□ 1.81
SS18-212ENST00000579061 TARBP1Q13395 1621 aaKnown RBP26.37■■□□□ 1.81
SS18-212ENST00000579061 CUX1P39880 1505 aa26.34■■□□□ 1.81
SS18-212ENST00000579061 EIF4G3O43432 1585 aaKnown RBP26.3■■□□□ 1.8
SS18-212ENST00000579061 FGD5Q6ZNL6 1462 aa26.29■■□□□ 1.8
SS18-212ENST00000579061 SOGA1O94964 1423 aa26.28■■□□□ 1.8
SS18-212ENST00000579061 RAD54L2Q9Y4B4 1467 aa26.25■■□□□ 1.79
SS18-212ENST00000579061 WDR97A6NE52 1622 aa26.21■■□□□ 1.79
SS18-212ENST00000579061 OSCARQ8IYS5 282 aa26.21■■□□□ 1.79
SS18-212ENST00000579061 AQRO60306 1485 aaKnown RBP eCLIP26.21■■□□□ 1.795e-6■■■□□ 16.9
SS18-212ENST00000579061 TDRD9Q8NDG6 1382 aaKnown RBP26.12■■□□□ 1.77
SS18-212ENST00000579061 WRNQ14191 1432 aaPredicted RBP eCLIP26.11■■□□□ 1.77
SS18-212ENST00000579061 BIVM-ERCC5R4GMW8 1640 aa26.1■■□□□ 1.77
SS18-212ENST00000579061 TOP2BQ02880 1626 aa26.1■■□□□ 1.77
SS18-212ENST00000579061 ABCA10Q8WWZ4 1543 aa26.06■■□□□ 1.76
SS18-212ENST00000579061 SYNJ1O43426 1573 aa26.03■■□□□ 1.76
SS18-212ENST00000579061 CHD1O14646 1710 aa26.02■■□□□ 1.76
SS18-212ENST00000579061 GRIN2BQ13224 1484 aa26.01■■□□□ 1.75
SS18-212ENST00000579061 MAGI1Q96QZ7 1491 aaPredicted RBP25.98■■□□□ 1.75
SS18-212ENST00000579061 GAPVD1Q14C86 1478 aa25.98■■□□□ 1.75
SS18-212ENST00000579061 SNAPC4Q5SXM2 1469 aa25.97■■□□□ 1.75
SS18-212ENST00000579061 ABCA5Q8WWZ7 1642 aa25.96■■□□□ 1.75
SS18-212ENST00000579061 PBRM1Q86U86 1689 aa25.95■■□□□ 1.74
SS18-212ENST00000579061 FBLN2P98095 1184 aa25.91■■□□□ 1.74
SS18-212ENST00000579061 SYNJ2O15056 1496 aa25.86■■□□□ 1.73
SS18-212ENST00000579061 CHMP7Q8WUX9 453 aaPredicted RBP25.85■■□□□ 1.73
SS18-212ENST00000579061 RIMBP3CA6NJZ7 1639 aa25.81■■□□□ 1.72
SS18-212ENST00000579061 RIMBP3BA6NNM3 1639 aa25.81■■□□□ 1.72
SS18-212ENST00000579061 RIMBP3Q9UFD9 1639 aa25.81■■□□□ 1.72
SS18-212ENST00000579061 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
SS18-212ENST00000579061 ERICH3Q5RHP9 1530 aa25.75■■□□□ 1.71
SS18-212ENST00000579061 CLASP1Q7Z460 1538 aa25.74■■□□□ 1.71
SS18-212ENST00000579061 TRIM41Q8WV44 630 aa25.74■■□□□ 1.71
SS18-212ENST00000579061 ADAMTS12P58397 1594 aa25.73■■□□□ 1.71
SS18-212ENST00000579061 FHAD1B1AJZ9 1412 aa25.68■■□□□ 1.7
SS18-212ENST00000579061 GRIN2AQ12879 1464 aa25.66■■□□□ 1.7
SS18-212ENST00000579061 KIF27Q86VH2 1401 aa25.59■■□□□ 1.69
SS18-212ENST00000579061 NUP160Q12769 1436 aa25.58■■□□□ 1.69
SS18-212ENST00000579061 ARAP1Q96P48 1450 aa25.55■■□□□ 1.68
SS18-212ENST00000579061 CEP170Q5SW79 1584 aa25.54■■□□□ 1.68
SS18-212ENST00000579061 CYB5RLQ6IPT4 315 aa25.51■■□□□ 1.67
SS18-212ENST00000579061 IGF1RP08069 1367 aa25.5■■□□□ 1.67
SS18-212ENST00000579061 CUL7Q14999 1698 aa25.48■■□□□ 1.67
SS18-212ENST00000579061 SHROOM2Q13796 1616 aa25.42■■□□□ 1.66
SS18-212ENST00000579061 CARMIL1Q5VZK9 1371 aa25.34■■□□□ 1.65
SS18-212ENST00000579061 RUSC2Q8N2Y8 1516 aa25.34■■□□□ 1.65
SS18-212ENST00000579061 ERCC6L2Q5T890 1561 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms