RNA–Protein interactions for RNA: ENST00000563888.6

TCF4-221, Transcript of transcription factor 4, humanhuman

TSL 4

Gene TCF4, Length 570 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-221ENST00000563888 AEBP2Q6ZN18 517 aaPredicted RBP24.28■■□□□ 1.48
TCF4-221ENST00000563888 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
TCF4-221ENST00000563888 SENP3Q9H4L4 574 aaPredicted RBP20.79■□□□□ 0.92
TCF4-221ENST00000563888 PHF23Q9BUL5 403 aaPredicted RBP20.51■□□□□ 0.87
TCF4-221ENST00000563888 FOXD1Q16676 465 aa19.28■□□□□ 0.68
TCF4-221ENST00000563888 PLPPR3Q6T4P5 718 aa19.09■□□□□ 0.65
TCF4-221ENST00000563888 NISCHQ9Y2I1 1504 aa18.51■□□□□ 0.55
TCF4-221ENST00000563888 PPP6R1Q9UPN7 881 aa18.15■□□□□ 0.5
TCF4-221ENST00000563888 ADRA2BP18089 450 aa18.13■□□□□ 0.49
TCF4-221ENST00000563888 PIAS4Q8N2W9 510 aaPredicted RBP18.11■□□□□ 0.49
TCF4-221ENST00000563888 MSH5O43196 834 aa18.05■□□□□ 0.48
TCF4-221ENST00000563888 ABCC9O60706 1549 aa17.67■□□□□ 0.42
TCF4-221ENST00000563888 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.36
TCF4-221ENST00000563888 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
TCF4-221ENST00000563888 KCNA4P22459 653 aa16.94■□□□□ 0.3
TCF4-221ENST00000563888 PPP4R3CPQ6ZMV5 832 aa16.85■□□□□ 0.29
TCF4-221ENST00000563888 CCDC180Q9P1Z9 1646 aa16.74■□□□□ 0.27
TCF4-221ENST00000563888 SCAF1Q9H7N4 1312 aaKnown RBP16.73■□□□□ 0.27
TCF4-221ENST00000563888 NCBP3Q53F19 620 aaKnown RBP16.63■□□□□ 0.25
TCF4-221ENST00000563888 MAPK8IP2Q13387 824 aaPredicted RBP16.57■□□□□ 0.24
TCF4-221ENST00000563888 DMRT2Q9Y5R5 561 aa16.49■□□□□ 0.23
TCF4-221ENST00000563888 PABPN1Q86U42 306 aaKnown RBP eCLIP16.48■□□□□ 0.23
TCF4-221ENST00000563888 RB1CC1Q8TDY2 1594 aa16.38■□□□□ 0.21
TCF4-221ENST00000563888 EHMT2Q96KQ7 1210 aa16.36■□□□□ 0.21
TCF4-221ENST00000563888 DNAJC5Q9H3Z4 198 aa16.31■□□□□ 0.2
TCF4-221ENST00000563888 CNKSR2Q8WXI2 1034 aa16.29■□□□□ 0.2
TCF4-221ENST00000563888 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
TCF4-221ENST00000563888 NPM3O75607 178 aaKnown RBP16.27■□□□□ 0.2
TCF4-221ENST00000563888 DCAF8L2P0C7V8 631 aa16.25■□□□□ 0.19
TCF4-221ENST00000563888 NACADO15069 1562 aa16.09■□□□□ 0.17
TCF4-221ENST00000563888 HOXD11P31277 338 aaPredicted RBP15.98■□□□□ 0.15
TCF4-221ENST00000563888 CECR2Q9BXF3 1484 aa15.97■□□□□ 0.15
TCF4-221ENST00000563888 RNF216Q9NWF9 866 aaPredicted RBP15.94■□□□□ 0.14
TCF4-221ENST00000563888 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
TCF4-221ENST00000563888 UNC13AQ9UPW8 1703 aa15.88■□□□□ 0.13
TCF4-221ENST00000563888 CSRNP3Q8WYN3 585 aa15.87■□□□□ 0.13
TCF4-221ENST00000563888 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.12
TCF4-221ENST00000563888 DCAF8L1A6NGE4 600 aa15.82■□□□□ 0.12
TCF4-221ENST00000563888 EIF4G1Q04637 1599 aaKnown RBP15.62■□□□□ 0.09
TCF4-221ENST00000563888 MYO15BQ96JP2 1530 aa15.58■□□□□ 0.08
TCF4-221ENST00000563888 SHROOM4Q9ULL8 1493 aa15.55■□□□□ 0.08
TCF4-221ENST00000563888 ZBTB22O15209 634 aa15.53■□□□□ 0.08
TCF4-221ENST00000563888 FOXD4L1Q9NU39 408 aa15.5■□□□□ 0.07
TCF4-221ENST00000563888 TRIM41Q8WV44 630 aa15.44■□□□□ 0.06
TCF4-221ENST00000563888 CUX2O14529 1486 aa15.4■□□□□ 0.06
TCF4-221ENST00000563888 SCRIBQ14160 1630 aa15.39■□□□□ 0.05
TCF4-221ENST00000563888 RNF39Q9H2S5 420 aa15.37■□□□□ 0.05
TCF4-221ENST00000563888 CACNB1Q02641 598 aaPredicted RBP15.33■□□□□ 0.04
TCF4-221ENST00000563888 ERCC6Q03468 1493 aa15.31■□□□□ 0.04
TCF4-221ENST00000563888 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.25■□□□□ 0.03
TCF4-221ENST00000563888 SLC4A2P04920 1241 aa15.21■□□□□ 0.03
TCF4-221ENST00000563888 C1QBPQ07021 282 aaKnown RBP15.21■□□□□ 0.03
TCF4-221ENST00000563888 ZCCHC6Q5VYS8 1495 aaKnown RBP15.15■□□□□ 0.02
TCF4-221ENST00000563888 DCAF1Q9Y4B6 1507 aa15.14■□□□□ 0.01
TCF4-221ENST00000563888 MYCNP04198 464 aaPredicted RBP15.06■□□□□ 0
TCF4-221ENST00000563888 NESP48681 1621 aa14.98□□□□□ -0.01
TCF4-221ENST00000563888 ATXN8OSP0DMR3 200 aa14.92□□□□□ -0.02
TCF4-221ENST00000563888 NCAPD3P42695 1498 aa14.92□□□□□ -0.02
TCF4-221ENST00000563888 U3KPZ7 1027 aaPredicted RBP14.9□□□□□ -0.02
TCF4-221ENST00000563888 THOC2Q8NI27 1593 aaKnown RBP14.81□□□□□ -0.04
TCF4-221ENST00000563888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.8□□□□□ -0.04
TCF4-221ENST00000563888 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
TCF4-221ENST00000563888 ATAD2BQ9ULI0 1458 aa14.8□□□□□ -0.04
TCF4-221ENST00000563888 SMARCA2P51531 1590 aa14.79□□□□□ -0.04
TCF4-221ENST00000563888 OSCARQ8IYS5 282 aa14.75□□□□□ -0.05
TCF4-221ENST00000563888 SAMD1Q6SPF0 538 aaPredicted RBP14.74□□□□□ -0.05
TCF4-221ENST00000563888 PDS5BQ9NTI5 1447 aa14.68□□□□□ -0.06
TCF4-221ENST00000563888 APLP2Q06481 763 aa14.67□□□□□ -0.06
TCF4-221ENST00000563888 HMGXB3Q12766 1538 aa14.66□□□□□ -0.06
TCF4-221ENST00000563888 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
TCF4-221ENST00000563888 CAPN15O75808 1086 aa14.62□□□□□ -0.07
TCF4-221ENST00000563888 LAMC3Q9Y6N6 1575 aa14.62□□□□□ -0.07
TCF4-221ENST00000563888 KIF21AQ7Z4S6 1674 aa14.61□□□□□ -0.07
TCF4-221ENST00000563888 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
TCF4-221ENST00000563888 SPINK5Q9NQ38 1064 aaPredicted RBP14.6□□□□□ -0.07
TCF4-221ENST00000563888 BAZ1AQ9NRL2 1556 aaPredicted RBP14.6□□□□□ -0.07
TCF4-221ENST00000563888 MRC2Q9UBG0 1479 aa14.56□□□□□ -0.08
TCF4-221ENST00000563888 ATF5Q9Y2D1 282 aaPredicted RBP14.55□□□□□ -0.08
TCF4-221ENST00000563888 SMARCA4P51532 1647 aa14.54□□□□□ -0.08
TCF4-221ENST00000563888 CYB5RLQ6IPT4 315 aa14.51□□□□□ -0.09
TCF4-221ENST00000563888 CADPSQ9ULU8 1353 aa14.49□□□□□ -0.09
TCF4-221ENST00000563888 WDR62O43379 1518 aa14.48□□□□□ -0.09
TCF4-221ENST00000563888 RIMBP3CA6NJZ7 1639 aa14.48□□□□□ -0.09
TCF4-221ENST00000563888 RIMBP3BA6NNM3 1639 aa14.48□□□□□ -0.09
TCF4-221ENST00000563888 RIMBP3Q9UFD9 1639 aa14.48□□□□□ -0.09
TCF4-221ENST00000563888 ZNF219Q9P2Y4 722 aaPredicted RBP14.47□□□□□ -0.09
TCF4-221ENST00000563888 DSG3P32926 999 aa14.46□□□□□ -0.09
TCF4-221ENST00000563888 FKBP8Q14318 412 aa14.4□□□□□ -0.1
TCF4-221ENST00000563888 ARHGEF11O15085 1522 aa14.39□□□□□ -0.11
TCF4-221ENST00000563888 CEP164Q9UPV0 1460 aa14.37□□□□□ -0.11
TCF4-221ENST00000563888 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
TCF4-221ENST00000563888 FANCD2Q9BXW9 1451 aa14.31□□□□□ -0.12
TCF4-221ENST00000563888 MROH2BQ7Z745 1585 aa14.29□□□□□ -0.12
TCF4-221ENST00000563888 ABCB7O75027 752 aa14.26□□□□□ -0.13
TCF4-221ENST00000563888 URB2Q14146 1524 aaKnown RBP14.22□□□□□ -0.13
TCF4-221ENST00000563888 ARAP1Q96P48 1450 aa14.21□□□□□ -0.13
TCF4-221ENST00000563888 ZNF608Q9ULD9 1512 aaPredicted RBP14.2□□□□□ -0.14
TCF4-221ENST00000563888 FBLN2P98095 1184 aa14.2□□□□□ -0.14
TCF4-221ENST00000563888 CFTRP13569 1480 aa14.12□□□□□ -0.15
TCF4-221ENST00000563888 ILDR1Q86SU0 546 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms