RNA–Protein interactions for RNA: ENST00000262887.9

XRCC1-201, Transcript of X-ray repair cross complementing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene XRCC1, Length 2,802 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1-201ENST00000262887 NISCHQ9Y2I1 1504 aa28.95■■■□□ 2.22
XRCC1-201ENST00000262887 SHROOM4Q9ULL8 1493 aa25.34■■□□□ 1.65
XRCC1-201ENST00000262887 HRCP23327 699 aa25.22■■□□□ 1.63
XRCC1-201ENST00000262887 SUPT5HO00267 1087 aaKnown RBP25.17■■□□□ 1.62
XRCC1-201ENST00000262887 MYO15BQ96JP2 1530 aa24.81■■□□□ 1.56
XRCC1-201ENST00000262887 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
XRCC1-201ENST00000262887 PCGF6Q9BYE7 350 aa24.71■■□□□ 1.55
XRCC1-201ENST00000262887 PELP1Q8IZL8 1130 aaKnown RBP24.64■■□□□ 1.54
XRCC1-201ENST00000262887 ZCCHC6Q5VYS8 1495 aaKnown RBP24.62■■□□□ 1.53
XRCC1-201ENST00000262887 PPARGC1BQ86YN6 1023 aaKnown RBP24.59■■□□□ 1.53
XRCC1-201ENST00000262887 DCAF1Q9Y4B6 1507 aa24.32■■□□□ 1.48
XRCC1-201ENST00000262887 CCDC180Q9P1Z9 1646 aa24.23■■□□□ 1.47
XRCC1-201ENST00000262887 LOC105371045A0A1W2PR82 267 aa24.06■■□□□ 1.44
XRCC1-201ENST00000262887 DCAF8L2P0C7V8 631 aa24.06■■□□□ 1.44
XRCC1-201ENST00000262887 TRIM26Q12899 539 aaPredicted RBP24.03■■□□□ 1.44
XRCC1-201ENST00000262887 MYT1Q01538 1121 aa23.89■■□□□ 1.41
XRCC1-201ENST00000262887 ZEB1P37275 1124 aaPredicted RBP23.84■■□□□ 1.41
XRCC1-201ENST00000262887 SCAF1Q9H7N4 1312 aaKnown RBP23.73■■□□□ 1.39
XRCC1-201ENST00000262887 ABCC9O60706 1549 aa23.4■■□□□ 1.34
XRCC1-201ENST00000262887 TRIM41Q8WV44 630 aa23.35■■□□□ 1.33
XRCC1-201ENST00000262887 FAM9AQ8IZU1 332 aaPredicted RBP23.26■■□□□ 1.31
XRCC1-201ENST00000262887 ACIN1Q9UKV3 1341 aaKnown RBP23.24■■□□□ 1.31
XRCC1-201ENST00000262887 RSF1Q96T23 1441 aaPredicted RBP23.2■■□□□ 1.3
XRCC1-201ENST00000262887 NEUROD1Q13562 356 aa23.14■■□□□ 1.29
XRCC1-201ENST00000262887 EHMT2Q96KQ7 1210 aa23.11■■□□□ 1.29
XRCC1-201ENST00000262887 RB1CC1Q8TDY2 1594 aa23.09■■□□□ 1.29
XRCC1-201ENST00000262887 GTF3C3Q9Y5Q9 886 aa23.01■■□□□ 1.27
XRCC1-201ENST00000262887 CENPBP07199 599 aaPredicted RBP23■■□□□ 1.27
XRCC1-201ENST00000262887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.98■■□□□ 1.27
XRCC1-201ENST00000262887 CCER1Q8TC90 406 aaPredicted RBP22.98■■□□□ 1.27
XRCC1-201ENST00000262887 SCRIBQ14160 1630 aa22.96■■□□□ 1.27
XRCC1-201ENST00000262887 DIEXFQ68CQ4 756 aaKnown RBP22.91■■□□□ 1.26
XRCC1-201ENST00000262887 CECR2Q9BXF3 1484 aa22.6■■□□□ 1.21
XRCC1-201ENST00000262887 TTBK1Q5TCY1 1321 aaPredicted RBP22.59■■□□□ 1.21
XRCC1-201ENST00000262887 MROH2BQ7Z745 1585 aa22.58■■□□□ 1.2
XRCC1-201ENST00000262887 WRNQ14191 1432 aaPredicted RBP eCLIP22.53■■□□□ 1.2
XRCC1-201ENST00000262887 ZNF316A6NFI3 1004 aaPredicted RBP22.52■■□□□ 1.2
XRCC1-201ENST00000262887 WIZO95785 1651 aa22.5■■□□□ 1.19
XRCC1-201ENST00000262887 YTHDC1Q96MU7 727 aaKnown RBP22.45■■□□□ 1.18
XRCC1-201ENST00000262887 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
XRCC1-201ENST00000262887 CEP162Q5TB80 1403 aa22.42■■□□□ 1.18
XRCC1-201ENST00000262887 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
XRCC1-201ENST00000262887 PABPN1Q86U42 306 aaKnown RBP eCLIP22.38■■□□□ 1.17
XRCC1-201ENST00000262887 MIER1Q8N108 512 aa22.31■■□□□ 1.16
XRCC1-201ENST00000262887 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
XRCC1-201ENST00000262887 TNIKQ9UKE5 1360 aa22.29■■□□□ 1.16
XRCC1-201ENST00000262887 ABCC8Q09428 1581 aa22.28■■□□□ 1.16
XRCC1-201ENST00000262887 NACADO15069 1562 aa22.27■■□□□ 1.16
XRCC1-201ENST00000262887 SOGA1O94964 1423 aa22.2■■□□□ 1.14
XRCC1-201ENST00000262887 UBTFP17480 764 aaKnown RBP22.17■■□□□ 1.14
XRCC1-201ENST00000262887 BCL11AQ9H165 835 aa22.16■■□□□ 1.14
XRCC1-201ENST00000262887 EEA1Q15075 1411 aa22.14■■□□□ 1.13
XRCC1-201ENST00000262887 CSRNP3Q8WYN3 585 aa22.13■■□□□ 1.13
XRCC1-201ENST00000262887 TOP2AP11388 1531 aaKnown RBP22.11■■□□□ 1.13
XRCC1-201ENST00000262887 HNRNPUL2Q1KMD3 747 aaKnown RBP22.1■■□□□ 1.13
XRCC1-201ENST00000262887 GOLGA3Q08378 1498 aa22.06■■□□□ 1.12
XRCC1-201ENST00000262887 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
XRCC1-201ENST00000262887 CLSPNQ9HAW4 1339 aa22.04■■□□□ 1.12
XRCC1-201ENST00000262887 SMARCA2P51531 1590 aa22.02■■□□□ 1.12
XRCC1-201ENST00000262887 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
XRCC1-201ENST00000262887 SUPT16HQ9Y5B9 1047 aaKnown RBP21.95■■□□□ 1.1
XRCC1-201ENST00000262887 SMARCA4P51532 1647 aa21.91■■□□□ 1.1
XRCC1-201ENST00000262887 CEP164Q9UPV0 1460 aa21.86■■□□□ 1.09
XRCC1-201ENST00000262887 CLIP1P30622 1438 aa21.86■■□□□ 1.09
XRCC1-201ENST00000262887 ANP32EQ9BTT0 268 aa21.85■■□□□ 1.09
XRCC1-201ENST00000262887 APLP2Q06481 763 aa21.84■■□□□ 1.09
XRCC1-201ENST00000262887 VPS8Q8N3P4 1428 aa21.83■■□□□ 1.09
XRCC1-201ENST00000262887 TSHZ2Q9NRE2 1034 aa21.82■■□□□ 1.08
XRCC1-201ENST00000262887 KIF21BO75037 1637 aa21.8■■□□□ 1.08
XRCC1-201ENST00000262887 BICRAQ9NZM4 1560 aa21.74■■□□□ 1.07
XRCC1-201ENST00000262887 DHX57Q6P158 1386 aaKnown RBP21.7■■□□□ 1.06
XRCC1-201ENST00000262887 BAZ1BQ9UIG0 1483 aaKnown RBP21.68■■□□□ 1.06
XRCC1-201ENST00000262887 PRKCSHP14314 528 aaPredicted RBP21.66■■□□□ 1.06
XRCC1-201ENST00000262887 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
XRCC1-201ENST00000262887 RANGAP1P46060 587 aaPredicted RBP21.63■■□□□ 1.05
XRCC1-201ENST00000262887 RAPGEF2Q9Y4G8 1499 aa21.62■■□□□ 1.05
XRCC1-201ENST00000262887 BCANQ96GW7 911 aa21.44■■□□□ 1.02
XRCC1-201ENST00000262887 KCNH8Q96L42 1107 aa21.43■■□□□ 1.02
XRCC1-201ENST00000262887 KANK4Q5T7N3 995 aaPredicted RBP21.42■■□□□ 1.02
XRCC1-201ENST00000262887 RRBP1Q9P2E9 1410 aaKnown RBP21.41■■□□□ 1.02
XRCC1-201ENST00000262887 PEG3Q9GZU2 1588 aa21.4■■□□□ 1.02
XRCC1-201ENST00000262887 ARAP1Q96P48 1450 aa21.39■■□□□ 1.02
XRCC1-201ENST00000262887 FKBP8Q14318 412 aa21.39■■□□□ 1.02
XRCC1-201ENST00000262887 CUX2O14529 1486 aa21.38■■□□□ 1.01
XRCC1-201ENST00000262887 ERICH3Q5RHP9 1530 aa21.33■■□□□ 1
XRCC1-201ENST00000262887 RBM19Q9Y4C8 960 aaKnown RBP21.33■■□□□ 1
XRCC1-201ENST00000262887 CCNB3Q8WWL7 1395 aa21.31■■□□□ 1
XRCC1-201ENST00000262887 TOP2BQ02880 1626 aa21.29■■□□□ 1
XRCC1-201ENST00000262887 PRXQ9BXM0 1461 aa21.28■■□□□ 1
XRCC1-201ENST00000262887 ITGAEP38570 1179 aa21.28■■□□□ 1
XRCC1-201ENST00000262887 NEFLP07196 543 aa21.27■■□□□ 1
XRCC1-201ENST00000262887 ERICH6Q7L0X2 663 aa21.27■■□□□ 1
XRCC1-201ENST00000262887 DDX10Q13206 875 aaKnown RBP21.23■□□□□ 0.99
XRCC1-201ENST00000262887 RAB3GAP2Q9H2M9 1393 aa21.23■□□□□ 0.99
XRCC1-201ENST00000262887 MAPKBP1O60336 1514 aa21.23■□□□□ 0.99
XRCC1-201ENST00000262887 ATAD2BQ9ULI0 1458 aa21.2■□□□□ 0.98
XRCC1-201ENST00000262887 BIVM-ERCC5R4GMW8 1640 aa21.18■□□□□ 0.98
XRCC1-201ENST00000262887 WDR97A6NE52 1622 aa21.13■□□□□ 0.97
XRCC1-201ENST00000262887 PPP1R15AO75807 674 aaPredicted RBP21.11■□□□□ 0.97
XRCC1-201ENST00000262887 TRIM52Q96A61 297 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms