RNA–Protein interactions for RNA: ENST00000530927.5

GMDS-208, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GMDS, Length 1,440 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-208ENST00000530927 NISCHQ9Y2I1 1504 aa45.75■■■■■ 4.91
GMDS-208ENST00000530927 CCDC180Q9P1Z9 1646 aa40.65■■■■■ 4.1
GMDS-208ENST00000530927 ABCC9O60706 1549 aa40.01■■■■■ 4
GMDS-208ENST00000530927 DCAF8L2P0C7V8 631 aa38.35■■■■□ 3.73
GMDS-208ENST00000530927 RB1CC1Q8TDY2 1594 aa38.31■■■■□ 3.72
GMDS-208ENST00000530927 NACADO15069 1562 aa38.22■■■■□ 3.71
GMDS-208ENST00000530927 ZCCHC6Q5VYS8 1495 aaKnown RBP38.11■■■■□ 3.69
GMDS-208ENST00000530927 MYO15BQ96JP2 1530 aa37.89■■■■□ 3.66
GMDS-208ENST00000530927 DCAF1Q9Y4B6 1507 aa37.75■■■■□ 3.63
GMDS-208ENST00000530927 UNC13AQ9UPW8 1703 aa37.58■■■■□ 3.61
GMDS-208ENST00000530927 PABPN1Q86U42 306 aaKnown RBP eCLIP37.41■■■■□ 3.58
GMDS-208ENST00000530927 BICRAQ9NZM4 1560 aa37.27■■■■□ 3.56
GMDS-208ENST00000530927 SCRIBQ14160 1630 aa37.24■■■■□ 3.55
GMDS-208ENST00000530927 DNAJC5BQ9UF47 199 aa36.87■■■■□ 3.49
GMDS-208ENST00000530927 SHROOM4Q9ULL8 1493 aa36.64■■■■□ 3.46
GMDS-208ENST00000530927 EIF4G1Q04637 1599 aaKnown RBP36.25■■■■□ 3.39
GMDS-208ENST00000530927 CC2D2AQ9P2K1 1620 aa36.15■■■■□ 3.38
GMDS-208ENST00000530927 CECR2Q9BXF3 1484 aa35.89■■■■□ 3.34
GMDS-208ENST00000530927 SMARCA4P51532 1647 aa35.54■■■■□ 3.28
GMDS-208ENST00000530927 BAZ1AQ9NRL2 1556 aaPredicted RBP35.42■■■■□ 3.26
GMDS-208ENST00000530927 ATAD2BQ9ULI0 1458 aa35.36■■■■□ 3.25
GMDS-208ENST00000530927 MROH2BQ7Z745 1585 aa35.34■■■■□ 3.25
GMDS-208ENST00000530927 NCAPD3P42695 1498 aa35.29■■■■□ 3.24
GMDS-208ENST00000530927 SMARCA2P51531 1590 aa35.24■■■■□ 3.23
GMDS-208ENST00000530927 PEG3Q9GZU2 1588 aa35.12■■■■□ 3.21
GMDS-208ENST00000530927 HMGXB3Q12766 1538 aa35.11■■■■□ 3.21
GMDS-208ENST00000530927 BAZ1BQ9UIG0 1483 aaKnown RBP35.04■■■■□ 3.2
GMDS-208ENST00000530927 WIZO95785 1651 aa34.97■■■■□ 3.19
GMDS-208ENST00000530927 RSF1Q96T23 1441 aaPredicted RBP34.86■■■■□ 3.17
GMDS-208ENST00000530927 NESP48681 1621 aa34.64■■■■□ 3.14
GMDS-208ENST00000530927 TOP2AP11388 1531 aaKnown RBP34.5■■■■□ 3.11
GMDS-208ENST00000530927 ERCC6Q03468 1493 aa34.42■■■■□ 3.1
GMDS-208ENST00000530927 LAMC3Q9Y6N6 1575 aa34.37■■■■□ 3.09
GMDS-208ENST00000530927 CADPSQ9ULU8 1353 aa34.28■■■■□ 3.08
GMDS-208ENST00000530927 KIF21AQ7Z4S6 1674 aa34.2■■■■□ 3.06
GMDS-208ENST00000530927 CCDC88BA6NC98 1476 aa34.14■■■■□ 3.06
GMDS-208ENST00000530927 PDS5BQ9NTI5 1447 aa34.12■■■■□ 3.05
GMDS-208ENST00000530927 CFTRP13569 1480 aa34.07■■■■□ 3.04
GMDS-208ENST00000530927 THOC2Q8NI27 1593 aaKnown RBP34.06■■■■□ 3.04
GMDS-208ENST00000530927 CUX2O14529 1486 aa34.01■■■■□ 3.03
GMDS-208ENST00000530927 SUPT5HO00267 1087 aaKnown RBP33.98■■■■□ 3.03
GMDS-208ENST00000530927 FANCD2Q9BXW9 1451 aa33.93■■■■□ 3.02
GMDS-208ENST00000530927 CEP164Q9UPV0 1460 aa33.87■■■■□ 3.01
GMDS-208ENST00000530927 MRC2Q9UBG0 1479 aa33.84■■■■□ 3.01
GMDS-208ENST00000530927 PRDM2Q13029 1718 aa33.8■■■■□ 3
GMDS-208ENST00000530927 WDR62O43379 1518 aa33.74■■■□□ 2.99
GMDS-208ENST00000530927 URB2Q14146 1524 aaKnown RBP33.65■■■□□ 2.98
GMDS-208ENST00000530927 TOPBP1Q92547 1522 aa33.39■■■□□ 2.94
GMDS-208ENST00000530927 DNMBPQ6XZF7 1577 aa33.31■■■□□ 2.92
GMDS-208ENST00000530927 ABCC8Q09428 1581 aa33.22■■■□□ 2.91
GMDS-208ENST00000530927 CUX1P39880 1505 aa33.15■■■□□ 2.9
GMDS-208ENST00000530927 IFT140Q96RY7 1462 aa33.13■■■□□ 2.89
GMDS-208ENST00000530927 ZNF608Q9ULD9 1512 aaPredicted RBP33.13■■■□□ 2.89
GMDS-208ENST00000530927 DNAJC5Q9H3Z4 198 aa33.11■■■□□ 2.89
GMDS-208ENST00000530927 POLA1P09884 1462 aaPredicted RBP33.1■■■□□ 2.89
GMDS-208ENST00000530927 TARBP1Q13395 1621 aaKnown RBP33.04■■■□□ 2.88
GMDS-208ENST00000530927 RAD54L2Q9Y4B4 1467 aa33.02■■■□□ 2.88
GMDS-208ENST00000530927 FGD5Q6ZNL6 1462 aa33.02■■■□□ 2.88
GMDS-208ENST00000530927 EIF4G3O43432 1585 aaKnown RBP32.95■■■□□ 2.87
GMDS-208ENST00000530927 SOGA1O94964 1423 aa32.93■■■□□ 2.86
GMDS-208ENST00000530927 AQRO60306 1485 aaKnown RBP eCLIP32.91■■■□□ 2.86
GMDS-208ENST00000530927 SYNJ1O43426 1573 aa32.85■■■□□ 2.85
GMDS-208ENST00000530927 WRNQ14191 1432 aaPredicted RBP eCLIP32.83■■■□□ 2.85
GMDS-208ENST00000530927 TDRD9Q8NDG6 1382 aaKnown RBP32.82■■■□□ 2.84
GMDS-208ENST00000530927 TOP2BQ02880 1626 aa32.78■■■□□ 2.84
GMDS-208ENST00000530927 BIVM-ERCC5R4GMW8 1640 aa32.78■■■□□ 2.84
GMDS-208ENST00000530927 WDR97A6NE52 1622 aa32.76■■■□□ 2.84
GMDS-208ENST00000530927 ABCA10Q8WWZ4 1543 aa32.64■■■□□ 2.82
GMDS-208ENST00000530927 OSCARQ8IYS5 282 aa32.6■■■□□ 2.81
GMDS-208ENST00000530927 SNAPC4Q5SXM2 1469 aa32.58■■■□□ 2.81
GMDS-208ENST00000530927 CHD1O14646 1710 aa32.57■■■□□ 2.8
GMDS-208ENST00000530927 ABCA5Q8WWZ7 1642 aa32.56■■■□□ 2.8
GMDS-208ENST00000530927 GAPVD1Q14C86 1478 aa32.55■■■□□ 2.8
GMDS-208ENST00000530927 GRIN2BQ13224 1484 aa32.54■■■□□ 2.8
GMDS-208ENST00000530927 PBRM1Q86U86 1689 aa32.53■■■□□ 2.8
GMDS-208ENST00000530927 FBLN2P98095 1184 aa32.51■■■□□ 2.8
GMDS-208ENST00000530927 MAGI1Q96QZ7 1491 aaPredicted RBP32.43■■■□□ 2.78
GMDS-208ENST00000530927 SYNJ2O15056 1496 aa32.34■■■□□ 2.77
GMDS-208ENST00000530927 CHMP7Q8WUX9 453 aaPredicted RBP32.34■■■□□ 2.77
GMDS-208ENST00000530927 ADAMTS12P58397 1594 aa32.26■■■□□ 2.75
GMDS-208ENST00000530927 ERICH3Q5RHP9 1530 aa32.22■■■□□ 2.75
GMDS-208ENST00000530927 RIMBP3CA6NJZ7 1639 aa32.2■■■□□ 2.75
GMDS-208ENST00000530927 RIMBP3BA6NNM3 1639 aa32.2■■■□□ 2.75
GMDS-208ENST00000530927 RIMBP3Q9UFD9 1639 aa32.2■■■□□ 2.75
GMDS-208ENST00000530927 CLASP1Q7Z460 1538 aa32.17■■■□□ 2.74
GMDS-208ENST00000530927 ARHGEF11O15085 1522 aa32.16■■■□□ 2.74
GMDS-208ENST00000530927 GRIN2AQ12879 1464 aa32.15■■■□□ 2.74
GMDS-208ENST00000530927 FHAD1B1AJZ9 1412 aa32.14■■■□□ 2.74
GMDS-208ENST00000530927 TRIM41Q8WV44 630 aa32.11■■■□□ 2.73
GMDS-208ENST00000530927 KIF27Q86VH2 1401 aa32.11■■■□□ 2.73
GMDS-208ENST00000530927 CEP170Q5SW79 1584 aa32.06■■■□□ 2.72
GMDS-208ENST00000530927 IGF1RP08069 1367 aa32.05■■■□□ 2.72
GMDS-208ENST00000530927 NUP160Q12769 1436 aa31.99■■■□□ 2.71
GMDS-208ENST00000530927 RUSC2Q8N2Y8 1516 aa31.99■■■□□ 2.71
GMDS-208ENST00000530927 ARAP1Q96P48 1450 aa31.93■■■□□ 2.7
GMDS-208ENST00000530927 CUL7Q14999 1698 aa31.91■■■□□ 2.7
GMDS-208ENST00000530927 CYB5RLQ6IPT4 315 aa31.88■■■□□ 2.69
GMDS-208ENST00000530927 ERCC6L2Q5T890 1561 aa31.84■■■□□ 2.69
GMDS-208ENST00000530927 CARMIL1Q5VZK9 1371 aa31.83■■■□□ 2.69
GMDS-208ENST00000530927 SHROOM2Q13796 1616 aa31.77■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms