RNA–Protein interactions for RNA: ENST00000380805.6

GMDS-201, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

TSL 2

Gene GMDS, Length 1,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-201ENST00000380805 NISCHQ9Y2I1 1504 aa42.66■■■■■ 4.42
GMDS-201ENST00000380805 CCDC180Q9P1Z9 1646 aa37.05■■■■□ 3.52
GMDS-201ENST00000380805 ZCCHC6Q5VYS8 1495 aaKnown RBP35.98■■■■□ 3.35
GMDS-201ENST00000380805 ABCC9O60706 1549 aa35.69■■■■□ 3.3
GMDS-201ENST00000380805 DCAF1Q9Y4B6 1507 aa35.37■■■■□ 3.25
GMDS-201ENST00000380805 SHROOM4Q9ULL8 1493 aa34.94■■■■□ 3.18
GMDS-201ENST00000380805 DCAF8L2P0C7V8 631 aa34.86■■■■□ 3.17
GMDS-201ENST00000380805 MYO15BQ96JP2 1530 aa34.76■■■■□ 3.16
GMDS-201ENST00000380805 NACADO15069 1562 aa34.53■■■■□ 3.12
GMDS-201ENST00000380805 RB1CC1Q8TDY2 1594 aa34.45■■■■□ 3.1
GMDS-201ENST00000380805 SCRIBQ14160 1630 aa34■■■■□ 3.03
GMDS-201ENST00000380805 SUPT5HO00267 1087 aaKnown RBP33.85■■■■□ 3.01
GMDS-201ENST00000380805 UNC13AQ9UPW8 1703 aa33.76■■■■□ 3
GMDS-201ENST00000380805 PABPN1Q86U42 306 aaKnown RBP eCLIP33.5■■■□□ 2.95
GMDS-201ENST00000380805 BICRAQ9NZM4 1560 aa33.48■■■□□ 2.95
GMDS-201ENST00000380805 RSF1Q96T23 1441 aaPredicted RBP33.26■■■□□ 2.91
GMDS-201ENST00000380805 CECR2Q9BXF3 1484 aa33.05■■■□□ 2.88
GMDS-201ENST00000380805 MROH2BQ7Z745 1585 aa32.95■■■□□ 2.87
GMDS-201ENST00000380805 BAZ1AQ9NRL2 1556 aaPredicted RBP32.9■■■□□ 2.86
GMDS-201ENST00000380805 CHIC1Q5VXU3 224 aa32.8■■■□□ 2.84
GMDS-201ENST00000380805 WIZO95785 1651 aa32.72■■■□□ 2.83
GMDS-201ENST00000380805 SMARCA4P51532 1647 aa32.7■■■□□ 2.83
GMDS-201ENST00000380805 EIF4G1Q04637 1599 aaKnown RBP32.51■■■□□ 2.8
GMDS-201ENST00000380805 TOP2AP11388 1531 aaKnown RBP32.42■■■□□ 2.78
GMDS-201ENST00000380805 DNAJC5BQ9UF47 199 aa32.37■■■□□ 2.77
GMDS-201ENST00000380805 PEG3Q9GZU2 1588 aa32.35■■■□□ 2.77
GMDS-201ENST00000380805 CC2D2AQ9P2K1 1620 aa32.27■■■□□ 2.76
GMDS-201ENST00000380805 SMARCA2P51531 1590 aa32.14■■■□□ 2.74
GMDS-201ENST00000380805 CCDC88BA6NC98 1476 aa32.04■■■□□ 2.72
GMDS-201ENST00000380805 ATAD2BQ9ULI0 1458 aa32.03■■■□□ 2.72
GMDS-201ENST00000380805 NCAPD3P42695 1498 aa31.9■■■□□ 2.7
GMDS-201ENST00000380805 TRIM41Q8WV44 630 aa31.83■■■□□ 2.69
GMDS-201ENST00000380805 BAZ1BQ9UIG0 1483 aaKnown RBP31.8■■■□□ 2.68
GMDS-201ENST00000380805 HMGXB3Q12766 1538 aa31.75■■■□□ 2.67
GMDS-201ENST00000380805 ABCC8Q09428 1581 aa31.53■■■□□ 2.64
GMDS-201ENST00000380805 LOC105371045A0A1W2PR82 267 aa31.48■■■□□ 2.63
GMDS-201ENST00000380805 WRNQ14191 1432 aaPredicted RBP eCLIP31.26■■■□□ 2.59
GMDS-201ENST00000380805 FAM9AQ8IZU1 332 aaPredicted RBP31.18■■■□□ 2.58
GMDS-201ENST00000380805 SYNJ1O43426 1573 aa31.17■■■□□ 2.58
GMDS-201ENST00000380805 EEA1Q15075 1411 aa31.15■■■□□ 2.58
GMDS-201ENST00000380805 PRDM2Q13029 1718 aa31.09■■■□□ 2.57
GMDS-201ENST00000380805 CFTRP13569 1480 aa31.09■■■□□ 2.57
GMDS-201ENST00000380805 NESP48681 1621 aa31.07■■■□□ 2.56
GMDS-201ENST00000380805 TOP2BQ02880 1626 aa31.04■■■□□ 2.56
GMDS-201ENST00000380805 BIVM-ERCC5R4GMW8 1640 aa31.03■■■□□ 2.56
GMDS-201ENST00000380805 SOGA1O94964 1423 aa31.02■■■□□ 2.56
GMDS-201ENST00000380805 CADPSQ9ULU8 1353 aa31.02■■■□□ 2.56
GMDS-201ENST00000380805 LAMC3Q9Y6N6 1575 aa30.94■■■□□ 2.54
GMDS-201ENST00000380805 RUSC2Q8N2Y8 1516 aa30.89■■■□□ 2.53
GMDS-201ENST00000380805 CSRNP3Q8WYN3 585 aa30.8■■■□□ 2.52
GMDS-201ENST00000380805 CUX1P39880 1505 aa30.79■■■□□ 2.52
GMDS-201ENST00000380805 KIF21BO75037 1637 aa30.77■■■□□ 2.52
GMDS-201ENST00000380805 PDS5BQ9NTI5 1447 aa30.73■■■□□ 2.51
GMDS-201ENST00000380805 GOLGA3Q08378 1498 aa30.71■■■□□ 2.51
GMDS-201ENST00000380805 TNIKQ9UKE5 1360 aa30.7■■■□□ 2.51
GMDS-201ENST00000380805 KIF21AQ7Z4S6 1674 aa30.67■■■□□ 2.5
GMDS-201ENST00000380805 FANCD2Q9BXW9 1451 aa30.67■■■□□ 2.5
GMDS-201ENST00000380805 CEP164Q9UPV0 1460 aa30.66■■■□□ 2.5
GMDS-201ENST00000380805 ERCC6Q03468 1493 aa30.65■■■□□ 2.5
GMDS-201ENST00000380805 EHMT2Q96KQ7 1210 aa30.64■■■□□ 2.5
GMDS-201ENST00000380805 PCGF6Q9BYE7 350 aa30.57■■■□□ 2.48
GMDS-201ENST00000380805 CEP162Q5TB80 1403 aa30.56■■■□□ 2.48
GMDS-201ENST00000380805 TRIM26Q12899 539 aaPredicted RBP30.53■■■□□ 2.48
GMDS-201ENST00000380805 ERICH3Q5RHP9 1530 aa30.46■■■□□ 2.47
GMDS-201ENST00000380805 PRXQ9BXM0 1461 aa30.42■■■□□ 2.46
GMDS-201ENST00000380805 KIF27Q86VH2 1401 aa30.41■■■□□ 2.46
GMDS-201ENST00000380805 RAPGEF2Q9Y4G8 1499 aa30.39■■■□□ 2.46
GMDS-201ENST00000380805 THOC2Q8NI27 1593 aaKnown RBP30.39■■■□□ 2.46
GMDS-201ENST00000380805 MRC2Q9UBG0 1479 aa30.39■■■□□ 2.45
GMDS-201ENST00000380805 DNMBPQ6XZF7 1577 aa30.37■■■□□ 2.45
GMDS-201ENST00000380805 UBTFP17480 764 aaKnown RBP30.36■■■□□ 2.45
GMDS-201ENST00000380805 URB2Q14146 1524 aaKnown RBP30.35■■■□□ 2.45
GMDS-201ENST00000380805 FGD5Q6ZNL6 1462 aa30.34■■■□□ 2.45
GMDS-201ENST00000380805 WDR62O43379 1518 aa30.27■■■□□ 2.44
GMDS-201ENST00000380805 TOPBP1Q92547 1522 aa30.24■■■□□ 2.43
GMDS-201ENST00000380805 HRCP23327 699 aa30.22■■■□□ 2.43
GMDS-201ENST00000380805 CUX2O14529 1486 aa30.2■■■□□ 2.43
GMDS-201ENST00000380805 CLIP1P30622 1438 aa30.19■■■□□ 2.42
GMDS-201ENST00000380805 POLA1P09884 1462 aaPredicted RBP30.13■■■□□ 2.41
GMDS-201ENST00000380805 ABCA10Q8WWZ4 1543 aa30.13■■■□□ 2.41
GMDS-201ENST00000380805 IGF1RP08069 1367 aa30.09■■■□□ 2.41
GMDS-201ENST00000380805 WDR97A6NE52 1622 aa30.08■■■□□ 2.41
GMDS-201ENST00000380805 VPS8Q8N3P4 1428 aa30.05■■■□□ 2.4
GMDS-201ENST00000380805 RAD54L2Q9Y4B4 1467 aa29.98■■■□□ 2.39
GMDS-201ENST00000380805 CARMIL1Q5VZK9 1371 aa29.92■■■□□ 2.38
GMDS-201ENST00000380805 CUL7Q14999 1698 aa29.92■■■□□ 2.38
GMDS-201ENST00000380805 ARAP1Q96P48 1450 aa29.89■■■□□ 2.38
GMDS-201ENST00000380805 ABCA5Q8WWZ7 1642 aa29.89■■■□□ 2.38
GMDS-201ENST00000380805 TARBP1Q13395 1621 aaKnown RBP29.87■■■□□ 2.37
GMDS-201ENST00000380805 IFT140Q96RY7 1462 aa29.87■■■□□ 2.37
GMDS-201ENST00000380805 PPARGC1BQ86YN6 1023 aaKnown RBP29.87■■■□□ 2.37
GMDS-201ENST00000380805 ZNF608Q9ULD9 1512 aaPredicted RBP29.79■■■□□ 2.36
GMDS-201ENST00000380805 ARHGAP35Q9NRY4 1499 aa29.79■■■□□ 2.36
GMDS-201ENST00000380805 TDRD9Q8NDG6 1382 aaKnown RBP29.74■■■□□ 2.35
GMDS-201ENST00000380805 AQRO60306 1485 aaKnown RBP eCLIP29.7■■■□□ 2.35
GMDS-201ENST00000380805 GAPVD1Q14C86 1478 aa29.68■■■□□ 2.34
GMDS-201ENST00000380805 CTTNBP2Q8WZ74 1663 aa29.68■■■□□ 2.34
GMDS-201ENST00000380805 EIF4G3O43432 1585 aaKnown RBP29.63■■■□□ 2.33
GMDS-201ENST00000380805 RANGAP1P46060 587 aaPredicted RBP29.61■■■□□ 2.33
GMDS-201ENST00000380805 ZEB1P37275 1124 aaPredicted RBP29.59■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms