RNA–Protein interactions for RNA: ENST00000439338.5

UBE2F-212, Transcript of ubiquitin conjugating enzyme E2 F (putative), humanhuman

TSL 5

Gene UBE2F, Length 873 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2F-212ENST00000439338 NISCHQ9Y2I1 1504 aa50.23■■■■■ 5.63
UBE2F-212ENST00000439338 CCDC180Q9P1Z9 1646 aa44.78■■■■■ 4.76
UBE2F-212ENST00000439338 ABCC9O60706 1549 aa44.03■■■■■ 4.64
UBE2F-212ENST00000439338 RB1CC1Q8TDY2 1594 aa42.24■■■■■ 4.35
UBE2F-212ENST00000439338 NACADO15069 1562 aa42.12■■■■■ 4.33
UBE2F-212ENST00000439338 DCAF8L2P0C7V8 631 aa42.03■■■■■ 4.32
UBE2F-212ENST00000439338 ZCCHC6Q5VYS8 1495 aaKnown RBP41.82■■■■■ 4.29
UBE2F-212ENST00000439338 MYO15BQ96JP2 1530 aa41.77■■■■■ 4.28
UBE2F-212ENST00000439338 DCAF1Q9Y4B6 1507 aa41.53■■■■■ 4.24
UBE2F-212ENST00000439338 UNC13AQ9UPW8 1703 aa41.34■■■■■ 4.21
UBE2F-212ENST00000439338 PABPN1Q86U42 306 aaKnown RBP eCLIP41.08■■■■■ 4.17
UBE2F-212ENST00000439338 BICRAQ9NZM4 1560 aa40.99■■■■■ 4.15
UBE2F-212ENST00000439338 SCRIBQ14160 1630 aa40.87■■■■■ 4.13
UBE2F-212ENST00000439338 DNAJC5BQ9UF47 199 aa40.58■■■■■ 4.09
UBE2F-212ENST00000439338 SHROOM4Q9ULL8 1493 aa40.49■■■■■ 4.07
UBE2F-212ENST00000439338 EIF4G1Q04637 1599 aaKnown RBP39.92■■■■□ 3.98
UBE2F-212ENST00000439338 CC2D2AQ9P2K1 1620 aa39.82■■■■□ 3.96
UBE2F-212ENST00000439338 CECR2Q9BXF3 1484 aa39.57■■■■□ 3.93
UBE2F-212ENST00000439338 SMARCA4P51532 1647 aa39.05■■■■□ 3.84
UBE2F-212ENST00000439338 BAZ1AQ9NRL2 1556 aaPredicted RBP38.95■■■■□ 3.83
UBE2F-212ENST00000439338 ATAD2BQ9ULI0 1458 aa38.87■■■■□ 3.81
UBE2F-212ENST00000439338 NCAPD3P42695 1498 aa38.85■■■■□ 3.81
UBE2F-212ENST00000439338 SMARCA2P51531 1590 aa38.81■■■■□ 3.8
UBE2F-212ENST00000439338 MROH2BQ7Z745 1585 aa38.73■■■■□ 3.79
UBE2F-212ENST00000439338 HMGXB3Q12766 1538 aa38.68■■■■□ 3.78
UBE2F-212ENST00000439338 PEG3Q9GZU2 1588 aa38.65■■■■□ 3.78
UBE2F-212ENST00000439338 BAZ1BQ9UIG0 1483 aaKnown RBP38.54■■■■□ 3.76
UBE2F-212ENST00000439338 WIZO95785 1651 aa38.33■■■■□ 3.73
UBE2F-212ENST00000439338 RSF1Q96T23 1441 aaPredicted RBP38.18■■■■□ 3.7
UBE2F-212ENST00000439338 NESP48681 1621 aa38.05■■■■□ 3.68
UBE2F-212ENST00000439338 ERCC6Q03468 1493 aa37.96■■■■□ 3.67
UBE2F-212ENST00000439338 TOP2AP11388 1531 aaKnown RBP37.89■■■■□ 3.66
UBE2F-212ENST00000439338 LAMC3Q9Y6N6 1575 aa37.89■■■■□ 3.66
UBE2F-212ENST00000439338 CADPSQ9ULU8 1353 aa37.71■■■■□ 3.63
UBE2F-212ENST00000439338 PDS5BQ9NTI5 1447 aa37.62■■■■□ 3.61
UBE2F-212ENST00000439338 CUX2O14529 1486 aa37.62■■■■□ 3.61
UBE2F-212ENST00000439338 KIF21AQ7Z4S6 1674 aa37.61■■■■□ 3.61
UBE2F-212ENST00000439338 THOC2Q8NI27 1593 aaKnown RBP37.54■■■■□ 3.6
UBE2F-212ENST00000439338 CFTRP13569 1480 aa37.45■■■■□ 3.59
UBE2F-212ENST00000439338 CCDC88BA6NC98 1476 aa37.42■■■■□ 3.58
UBE2F-212ENST00000439338 FANCD2Q9BXW9 1451 aa37.31■■■■□ 3.56
UBE2F-212ENST00000439338 MRC2Q9UBG0 1479 aa37.28■■■■□ 3.56
UBE2F-212ENST00000439338 CEP164Q9UPV0 1460 aa37.28■■■■□ 3.56
UBE2F-212ENST00000439338 PRDM2Q13029 1718 aa37.22■■■■□ 3.55
UBE2F-212ENST00000439338 WDR62O43379 1518 aa37.17■■■■□ 3.54
UBE2F-212ENST00000439338 SUPT5HO00267 1087 aaKnown RBP37.05■■■■□ 3.52
UBE2F-212ENST00000439338 URB2Q14146 1524 aaKnown RBP36.96■■■■□ 3.51
UBE2F-212ENST00000439338 TOPBP1Q92547 1522 aa36.7■■■■□ 3.47
UBE2F-212ENST00000439338 DNAJC5Q9H3Z4 198 aa36.68■■■■□ 3.46
UBE2F-212ENST00000439338 DNMBPQ6XZF7 1577 aa36.64■■■■□ 3.46
UBE2F-212ENST00000439338 ABCC8Q09428 1581 aa36.63■■■■□ 3.45
UBE2F-212ENST00000439338 IFT140Q96RY7 1462 aa36.5■■■■□ 3.43
UBE2F-212ENST00000439338 ZNF608Q9ULD9 1512 aaPredicted RBP36.39■■■■□ 3.42
UBE2F-212ENST00000439338 POLA1P09884 1462 aaPredicted RBP36.37■■■■□ 3.41
UBE2F-212ENST00000439338 CUX1P39880 1505 aa36.35■■■■□ 3.41
UBE2F-212ENST00000439338 TARBP1Q13395 1621 aaKnown RBP36.32■■■■□ 3.4
UBE2F-212ENST00000439338 FGD5Q6ZNL6 1462 aa36.25■■■■□ 3.39
UBE2F-212ENST00000439338 EIF4G3O43432 1585 aaKnown RBP36.25■■■■□ 3.39
UBE2F-212ENST00000439338 RAD54L2Q9Y4B4 1467 aa36.23■■■■□ 3.39
UBE2F-212ENST00000439338 SOGA1O94964 1423 aa36.19■■■■□ 3.38
UBE2F-212ENST00000439338 AQRO60306 1485 aaKnown RBP eCLIP36.13■■■■□ 3.373e-6■■■□□ 18.3
UBE2F-212ENST00000439338 TDRD9Q8NDG6 1382 aaKnown RBP36.02■■■■□ 3.36
UBE2F-212ENST00000439338 WDR97A6NE52 1622 aa36.01■■■■□ 3.35
UBE2F-212ENST00000439338 WRNQ14191 1432 aaPredicted RBP eCLIP36■■■■□ 3.35
UBE2F-212ENST00000439338 BIVM-ERCC5R4GMW8 1640 aa35.98■■■■□ 3.35
UBE2F-212ENST00000439338 SYNJ1O43426 1573 aa35.98■■■■□ 3.35
UBE2F-212ENST00000439338 OSCARQ8IYS5 282 aa35.97■■■■□ 3.35
UBE2F-212ENST00000439338 TOP2BQ02880 1626 aa35.97■■■■□ 3.35
UBE2F-212ENST00000439338 ABCA10Q8WWZ4 1543 aa35.88■■■■□ 3.33
UBE2F-212ENST00000439338 CHD1O14646 1710 aa35.85■■■■□ 3.33
UBE2F-212ENST00000439338 SNAPC4Q5SXM2 1469 aa35.82■■■■□ 3.32
UBE2F-212ENST00000439338 GRIN2BQ13224 1484 aa35.8■■■■□ 3.32
UBE2F-212ENST00000439338 ABCA5Q8WWZ7 1642 aa35.79■■■■□ 3.32
UBE2F-212ENST00000439338 GAPVD1Q14C86 1478 aa35.78■■■■□ 3.32
UBE2F-212ENST00000439338 PBRM1Q86U86 1689 aa35.78■■■■□ 3.32
UBE2F-212ENST00000439338 MAGI1Q96QZ7 1491 aaPredicted RBP35.73■■■■□ 3.31
UBE2F-212ENST00000439338 FBLN2P98095 1184 aa35.72■■■■□ 3.31
UBE2F-212ENST00000439338 SYNJ2O15056 1496 aa35.6■■■■□ 3.29
UBE2F-212ENST00000439338 CHMP7Q8WUX9 453 aaPredicted RBP35.57■■■■□ 3.28
UBE2F-212ENST00000439338 RIMBP3CA6NJZ7 1639 aa35.51■■■■□ 3.28
UBE2F-212ENST00000439338 RIMBP3BA6NNM3 1639 aa35.51■■■■□ 3.28
UBE2F-212ENST00000439338 RIMBP3Q9UFD9 1639 aa35.51■■■■□ 3.28
UBE2F-212ENST00000439338 ADAMTS12P58397 1594 aa35.47■■■■□ 3.27
UBE2F-212ENST00000439338 ARHGEF11O15085 1522 aa35.47■■■■□ 3.27
UBE2F-212ENST00000439338 ERICH3Q5RHP9 1530 aa35.44■■■■□ 3.26
UBE2F-212ENST00000439338 TRIM41Q8WV44 630 aa35.44■■■■□ 3.26
UBE2F-212ENST00000439338 CLASP1Q7Z460 1538 aa35.43■■■■□ 3.26
UBE2F-212ENST00000439338 GRIN2AQ12879 1464 aa35.35■■■■□ 3.25
UBE2F-212ENST00000439338 FHAD1B1AJZ9 1412 aa35.35■■■■□ 3.25
UBE2F-212ENST00000439338 KIF27Q86VH2 1401 aa35.26■■■■□ 3.24
UBE2F-212ENST00000439338 CEP170Q5SW79 1584 aa35.21■■■■□ 3.23
UBE2F-212ENST00000439338 NUP160Q12769 1436 aa35.2■■■■□ 3.23
UBE2F-212ENST00000439338 ARAP1Q96P48 1450 aa35.17■■■■□ 3.22
UBE2F-212ENST00000439338 IGF1RP08069 1367 aa35.13■■■■□ 3.21
UBE2F-212ENST00000439338 CYB5RLQ6IPT4 315 aa35.1■■■■□ 3.21
UBE2F-212ENST00000439338 CUL7Q14999 1698 aa35.1■■■■□ 3.21
UBE2F-212ENST00000439338 SHROOM2Q13796 1616 aa34.98■■■■□ 3.19
UBE2F-212ENST00000439338 RUSC2Q8N2Y8 1516 aa34.95■■■■□ 3.19
UBE2F-212ENST00000439338 ERCC6L2Q5T890 1561 aa34.95■■■■□ 3.18
UBE2F-212ENST00000439338 CARMIL1Q5VZK9 1371 aa34.93■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms