RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 NISCHQ9Y2I1 1504 aa37.94■■■■□ 3.66
SS18-211ENST00000578954 CCDC180Q9P1Z9 1646 aa33.41■■■□□ 2.94
SS18-211ENST00000578954 ABCC9O60706 1549 aa31.85■■■□□ 2.69
SS18-211ENST00000578954 ZCCHC6Q5VYS8 1495 aaKnown RBP31.8■■■□□ 2.68
SS18-211ENST00000578954 DCAF1Q9Y4B6 1507 aa31.49■■■□□ 2.63
SS18-211ENST00000578954 MYO15BQ96JP2 1530 aa31.35■■■□□ 2.61
SS18-211ENST00000578954 NACADO15069 1562 aa31.22■■■□□ 2.59
SS18-211ENST00000578954 DCAF8L2P0C7V8 631 aa31.18■■■□□ 2.58
SS18-211ENST00000578954 RB1CC1Q8TDY2 1594 aa31.03■■■□□ 2.56
SS18-211ENST00000578954 SCRIBQ14160 1630 aa30.47■■■□□ 2.47
SS18-211ENST00000578954 UNC13AQ9UPW8 1703 aa30.34■■■□□ 2.45
SS18-211ENST00000578954 SHROOM4Q9ULL8 1493 aa30.31■■■□□ 2.44
SS18-211ENST00000578954 BICRAQ9NZM4 1560 aa30.11■■■□□ 2.41
SS18-211ENST00000578954 PABPN1Q86U42 306 aaKnown RBP eCLIP29.86■■■□□ 2.37
SS18-211ENST00000578954 CECR2Q9BXF3 1484 aa29.45■■■□□ 2.31
SS18-211ENST00000578954 BAZ1AQ9NRL2 1556 aaPredicted RBP29.35■■■□□ 2.29
SS18-211ENST00000578954 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
SS18-211ENST00000578954 MROH2BQ7Z745 1585 aa29.24■■■□□ 2.27
SS18-211ENST00000578954 EIF4G1Q04637 1599 aaKnown RBP29.22■■■□□ 2.27
SS18-211ENST00000578954 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.26
SS18-211ENST00000578954 PEG3Q9GZU2 1588 aa29.03■■■□□ 2.24
SS18-211ENST00000578954 WIZO95785 1651 aa28.94■■■□□ 2.22
SS18-211ENST00000578954 ATAD2BQ9ULI0 1458 aa28.92■■■□□ 2.22
SS18-211ENST00000578954 SMARCA2P51531 1590 aa28.92■■■□□ 2.22
SS18-211ENST00000578954 SUPT5HO00267 1087 aaKnown RBP28.9■■■□□ 2.22
SS18-211ENST00000578954 CC2D2AQ9P2K1 1620 aa28.89■■■□□ 2.22
SS18-211ENST00000578954 NCAPD3P42695 1498 aa28.8■■■□□ 2.2
SS18-211ENST00000578954 HMGXB3Q12766 1538 aa28.74■■■□□ 2.19
SS18-211ENST00000578954 TOP2AP11388 1531 aaKnown RBP28.73■■■□□ 2.19
SS18-211ENST00000578954 BAZ1BQ9UIG0 1483 aaKnown RBP28.69■■■□□ 2.18
SS18-211ENST00000578954 DNAJC5BQ9UF47 199 aa28.54■■■□□ 2.16
SS18-211ENST00000578954 CCDC88BA6NC98 1476 aa28.35■■■□□ 2.13
SS18-211ENST00000578954 CFTRP13569 1480 aa28■■■□□ 2.07
SS18-211ENST00000578954 CADPSQ9ULU8 1353 aa27.98■■■□□ 2.07
SS18-211ENST00000578954 LAMC3Q9Y6N6 1575 aa27.9■■■□□ 2.06
SS18-211ENST00000578954 PRDM2Q13029 1718 aa27.84■■■□□ 2.05
SS18-211ENST00000578954 NESP48681 1621 aa27.81■■■□□ 2.04
SS18-211ENST00000578954 PDS5BQ9NTI5 1447 aa27.66■■■□□ 2.02
SS18-211ENST00000578954 FANCD2Q9BXW9 1451 aa27.64■■■□□ 2.02
SS18-211ENST00000578954 CEP164Q9UPV0 1460 aa27.53■■■□□ 2
SS18-211ENST00000578954 ABCC8Q09428 1581 aa27.52■■■□□ 2
SS18-211ENST00000578954 CHIC1Q5VXU3 224 aa27.51■■□□□ 1.99
SS18-211ENST00000578954 KIF21AQ7Z4S6 1674 aa27.51■■□□□ 1.99
SS18-211ENST00000578954 WRNQ14191 1432 aaPredicted RBP eCLIP27.49■■□□□ 1.99
SS18-211ENST00000578954 CUX1P39880 1505 aa27.39■■□□□ 1.98
SS18-211ENST00000578954 SYNJ1O43426 1573 aa27.39■■□□□ 1.97
SS18-211ENST00000578954 ERCC6Q03468 1493 aa27.38■■□□□ 1.97
SS18-211ENST00000578954 TOP2BQ02880 1626 aa27.37■■□□□ 1.97
SS18-211ENST00000578954 BIVM-ERCC5R4GMW8 1640 aa27.37■■□□□ 1.97
SS18-211ENST00000578954 DNMBPQ6XZF7 1577 aa27.35■■□□□ 1.97
SS18-211ENST00000578954 MRC2Q9UBG0 1479 aa27.34■■□□□ 1.97
SS18-211ENST00000578954 URB2Q14146 1524 aaKnown RBP27.34■■□□□ 1.97
SS18-211ENST00000578954 TOPBP1Q92547 1522 aa27.31■■□□□ 1.96
SS18-211ENST00000578954 THOC2Q8NI27 1593 aaKnown RBP27.28■■□□□ 1.96
SS18-211ENST00000578954 TRIM41Q8WV44 630 aa27.28■■□□□ 1.96
SS18-211ENST00000578954 WDR62O43379 1518 aa27.26■■□□□ 1.95
SS18-211ENST00000578954 FGD5Q6ZNL6 1462 aa27.16■■□□□ 1.94
SS18-211ENST00000578954 POLA1P09884 1462 aaPredicted RBP27.13■■□□□ 1.93
SS18-211ENST00000578954 CUX2O14529 1486 aa27■■□□□ 1.91
SS18-211ENST00000578954 SOGA1O94964 1423 aa26.99■■□□□ 1.91
SS18-211ENST00000578954 ABCA10Q8WWZ4 1543 aa26.97■■□□□ 1.91
SS18-211ENST00000578954 RAD54L2Q9Y4B4 1467 aa26.96■■□□□ 1.91
SS18-211ENST00000578954 TARBP1Q13395 1621 aaKnown RBP26.96■■□□□ 1.91
SS18-211ENST00000578954 WDR97A6NE52 1622 aa26.94■■□□□ 1.9
SS18-211ENST00000578954 IFT140Q96RY7 1462 aa26.94■■□□□ 1.9
SS18-211ENST00000578954 EEA1Q15075 1411 aa26.89■■□□□ 1.89
SS18-211ENST00000578954 KIF27Q86VH2 1401 aa26.84■■□□□ 1.89
SS18-211ENST00000578954 RUSC2Q8N2Y8 1516 aa26.83■■□□□ 1.89
SS18-211ENST00000578954 ABCA5Q8WWZ7 1642 aa26.8■■□□□ 1.88
SS18-211ENST00000578954 ZNF608Q9ULD9 1512 aaPredicted RBP26.73■■□□□ 1.87
SS18-211ENST00000578954 TDRD9Q8NDG6 1382 aaKnown RBP26.72■■□□□ 1.87
SS18-211ENST00000578954 GAPVD1Q14C86 1478 aa26.7■■□□□ 1.87
SS18-211ENST00000578954 EIF4G3O43432 1585 aaKnown RBP26.67■■□□□ 1.86
SS18-211ENST00000578954 CSRNP3Q8WYN3 585 aa26.66■■□□□ 1.86
SS18-211ENST00000578954 AQRO60306 1485 aaKnown RBP eCLIP26.66■■□□□ 1.865e-6■■■□□ 16.9
SS18-211ENST00000578954 ERICH3Q5RHP9 1530 aa26.65■■□□□ 1.86
SS18-211ENST00000578954 FAM9AQ8IZU1 332 aaPredicted RBP26.65■■□□□ 1.86
SS18-211ENST00000578954 IGF1RP08069 1367 aa26.65■■□□□ 1.86
SS18-211ENST00000578954 GRIN2BQ13224 1484 aa26.61■■□□□ 1.85
SS18-211ENST00000578954 PBRM1Q86U86 1689 aa26.6■■□□□ 1.85
SS18-211ENST00000578954 PRXQ9BXM0 1461 aa26.58■■□□□ 1.85
SS18-211ENST00000578954 KIF21BO75037 1637 aa26.55■■□□□ 1.84
SS18-211ENST00000578954 CUL7Q14999 1698 aa26.55■■□□□ 1.84
SS18-211ENST00000578954 CARMIL1Q5VZK9 1371 aa26.48■■□□□ 1.83
SS18-211ENST00000578954 ADAMTS12P58397 1594 aa26.48■■□□□ 1.83
SS18-211ENST00000578954 MAGI1Q96QZ7 1491 aaPredicted RBP26.48■■□□□ 1.83
SS18-211ENST00000578954 SNAPC4Q5SXM2 1469 aa26.46■■□□□ 1.83
SS18-211ENST00000578954 FHAD1B1AJZ9 1412 aa26.45■■□□□ 1.82
SS18-211ENST00000578954 RAPGEF2Q9Y4G8 1499 aa26.43■■□□□ 1.82
SS18-211ENST00000578954 GOLGA3Q08378 1498 aa26.42■■□□□ 1.82
SS18-211ENST00000578954 SYNJ2O15056 1496 aa26.35■■□□□ 1.81
SS18-211ENST00000578954 LOC105371045A0A1W2PR82 267 aa26.32■■□□□ 1.8
SS18-211ENST00000578954 GRIN2AQ12879 1464 aa26.28■■□□□ 1.8
SS18-211ENST00000578954 TNIKQ9UKE5 1360 aa26.25■■□□□ 1.79
SS18-211ENST00000578954 CHMP7Q8WUX9 453 aaPredicted RBP26.19■■□□□ 1.78
SS18-211ENST00000578954 EHMT2Q96KQ7 1210 aa26.18■■□□□ 1.78
SS18-211ENST00000578954 UBTFP17480 764 aaKnown RBP26.17■■□□□ 1.78
SS18-211ENST00000578954 CHD1O14646 1710 aa26.17■■□□□ 1.78
SS18-211ENST00000578954 NUP160Q12769 1436 aa26.16■■□□□ 1.78
SS18-211ENST00000578954 CTTNBP2Q8WZ74 1663 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms