Protein–RNA interactions for Protein: P52298

NCBP2, Nuclear cap-binding protein subunit 2, humanhuman

Known RBP eCLIP

Length 156 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP2P52298 ARRDC1-202ENST00000419386 829 ntTSL 319.36■□□□□ 0.691e-7■■■■□ 26
NCBP2P52298 BNIP3-204ENST00000633835 1062 ntTSL 319.16■□□□□ 0.661e-7■■■■□ 26
NCBP2P52298 ARRDC1-204ENST00000461627 882 ntTSL 218.99■□□□□ 0.631e-7■■■■□ 26
NCBP2P52298 ARRDC1-205ENST00000466367 866 ntTSL 1 (best)18.97■□□□□ 0.631e-7■■■■□ 26
NCBP2P52298 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.86■□□□□ 0.611e-7■■■■□ 26
NCBP2P52298 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18■□□□□ 0.471e-7■■■■□ 26
NCBP2P52298 RSF1-202ENST00000440064 604 ntTSL 517.95■□□□□ 0.461e-7■■■■□ 26
NCBP2P52298 MECP2-216ENST00000627864 581 ntTSL 317.58■□□□□ 0.41e-7■■■■□ 26
NCBP2P52298 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.15■□□□□ 0.341e-7■■■■□ 26
NCBP2P52298 PGAP3-208ENST00000582276 546 ntTSL 416.9■□□□□ 0.31e-7■■■■□ 26
NCBP2P52298 SFXN5-222ENST00000497144 598 ntTSL 416.82■□□□□ 0.281e-7■■■■□ 26
NCBP2P52298 ARRDC1-209ENST00000483563 704 ntTSL 316.45■□□□□ 0.221e-7■■■■□ 26
NCBP2P52298 RSF1-206ENST00000528095 2107 ntTSL 1 (best)16.31■□□□□ 0.21e-7■■■■□ 26
NCBP2P52298 ARRDC1-203ENST00000431925 555 ntTSL 316.22■□□□□ 0.191e-7■■■■□ 26
NCBP2P52298 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.22■□□□□ 0.191e-7■■■■□ 26
NCBP2P52298 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.18■□□□□ 0.182e-14■■■■□ 26
NCBP2P52298 CDIP1-212ENST00000588381 484 ntTSL 315.98■□□□□ 0.151e-7■■■■□ 26
NCBP2P52298 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.151e-7■■■■□ 26
NCBP2P52298 RSF1-208ENST00000530604 520 ntTSL 215.76■□□□□ 0.111e-7■■■■□ 26
NCBP2P52298 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.76■□□□□ 0.111e-7■■■■□ 26
NCBP2P52298 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.091e-7■■■■□ 26
NCBP2P52298 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.58■□□□□ 0.082e-14■■■■□ 26
NCBP2P52298 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.52■□□□□ 0.081e-7■■■■□ 26
NCBP2P52298 RPL28-211ENST00000560881 1692 ntTSL 515.47■□□□□ 0.072e-14■■■■□ 26
NCBP2P52298 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.021e-7■■■■□ 26
NCBP2P52298 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.84□□□□□ -0.031e-7■■■■□ 26
NCBP2P52298 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.79□□□□□ -0.041e-7■■■■□ 26
NCBP2P52298 PGAP3-202ENST00000309862 3028 ntTSL 214.5□□□□□ -0.091e-7■■■■□ 26
NCBP2P52298 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.05□□□□□ -0.162e-14■■■■□ 26
NCBP2P52298 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.05□□□□□ -0.162e-14■■■■□ 26
NCBP2P52298 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.05□□□□□ -0.162e-14■■■■□ 26
NCBP2P52298 RSF1-203ENST00000467567 2982 ntTSL 213.85□□□□□ -0.191e-7■■■■□ 26
NCBP2P52298 BNIP3-203ENST00000631806 752 ntTSL 213.77□□□□□ -0.211e-7■■■■□ 26
NCBP2P52298 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.211e-7■■■■□ 26
NCBP2P52298 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.242e-14■■■■□ 26
NCBP2P52298 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.251e-7■■■■□ 26
NCBP2P52298 SFXN5-204ENST00000416579 895 ntTSL 313.45□□□□□ -0.261e-7■■■■□ 26
NCBP2P52298 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.34□□□□□ -0.271e-7■■■■□ 26
NCBP2P52298 SFXN5-203ENST00000411783 915 ntTSL 313.27□□□□□ -0.291e-7■■■■□ 26
NCBP2P52298 CDIP1-203ENST00000562579 577 ntTSL 513.19□□□□□ -0.31e-7■■■■□ 26
NCBP2P52298 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.1□□□□□ -0.311e-7■■■■□ 26
NCBP2P52298 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.1□□□□□ -0.311e-7■■■■□ 26
NCBP2P52298 USF1-209ENST00000529476 581 ntTSL 313.05□□□□□ -0.321e-7■■■■□ 26
NCBP2P52298 INHA-202ENST00000489456 645 ntTSL 212.94□□□□□ -0.341e-7■■■■□ 26
NCBP2P52298 BNIP3-202ENST00000540159 3066 ntTSL 1 (best)12.94□□□□□ -0.341e-7■■■■□ 26
NCBP2P52298 USF1-205ENST00000473969 1092 ntTSL 512.76□□□□□ -0.371e-7■■■■□ 26
NCBP2P52298 USF1-207ENST00000496363 990 ntTSL 211.76□□□□□ -0.531e-7■■■■□ 26
NCBP2P52298 USF1-206ENST00000491629 933 ntTSL 211.73□□□□□ -0.531e-7■■■■□ 26
NCBP2P52298 USF1-203ENST00000368021 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.591e-7■■■■□ 26
NCBP2P52298 USF1-211ENST00000534633 610 ntTSL 511.33□□□□□ -0.61e-7■■■■□ 26
NCBP2P52298 SFXN5-206ENST00000450185 2975 ntTSL 211.29□□□□□ -0.61e-7■■■■□ 26
NCBP2P52298 SFXN5-201ENST00000272433 4140 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.691e-7■■■■□ 26
NCBP2P52298 CDIP1-211ENST00000586768 548 ntTSL 410.64□□□□□ -0.711e-7■■■■□ 26
NCBP2P52298 SFXN5-202ENST00000410065 840 ntTSL 1 (best) BASIC10.59□□□□□ -0.711e-7■■■■□ 26
NCBP2P52298 MECP2-201ENST00000303391 10505 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.721e-7■■■■□ 26
NCBP2P52298 RPL28-201ENST00000344063 4796 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.742e-14■■■■□ 26
NCBP2P52298 PGAP3-210ENST00000584856 538 ntTSL 410.36□□□□□ -0.751e-7■■■■□ 26
NCBP2P52298 TDP1-212ENST00000555565 524 ntTSL 59.78□□□□□ -0.841e-7■■■■□ 26
NCBP2P52298 PGAP3-209ENST00000584620 804 ntTSL 39.74□□□□□ -0.851e-7■■■■□ 26
NCBP2P52298 SFXN5-205ENST00000442582 489 ntTSL 39.52□□□□□ -0.891e-7■■■■□ 26
NCBP2P52298 MECP2-202ENST00000369957 784 ntTSL 38.55□□□□□ -1.041e-7■■■■□ 26
NCBP2P52298 TDP1-202ENST00000393452 2370 ntTSL 1 (best) BASIC8.55□□□□□ -1.041e-7■■■■□ 26
NCBP2P52298 CDIP1-210ENST00000586728 756 ntTSL 58.43□□□□□ -1.061e-7■■■■□ 26
NCBP2P52298 TDP1-210ENST00000554976 3040 ntTSL 28.38□□□□□ -1.071e-7■■■■□ 26
NCBP2P52298 AL049697.1-203ENST00000513191 583 ntTSL 48.32□□□□□ -1.081e-7■■■■□ 26
NCBP2P52298 NRSN2-AS1-201ENST00000414676 750 ntTSL 28.27□□□□□ -1.091e-7■■■■□ 26
NCBP2P52298 AL049697.1-202ENST00000506888 1842 ntTSL 28.22□□□□□ -1.091e-7■■■■□ 26
NCBP2P52298 TDP1-203ENST00000393454 2068 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.11e-7■■■■□ 26
NCBP2P52298 MECP2-220ENST00000631210 490 ntTSL 1 (best)7.76□□□□□ -1.171e-7■■■■□ 26
NCBP2P52298 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.241e-7■■■■□ 26
NCBP2P52298 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.241e-7■■■■□ 26
NCBP2P52298 TDP1-209ENST00000554180 910 ntTSL 57.2□□□□□ -1.261e-7■■■■□ 26
NCBP2P52298 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.41e-7■■■■□ 26
NCBP2P52298 SFXN5-217ENST00000485057 447 ntTSL 55.78□□□□□ -1.481e-7■■■■□ 26
NCBP2P52298 SLC35A1-204ENST00000464978 1299 ntTSL 25.19□□□□□ -1.581e-7■■■■□ 26
NCBP2P52298 SFXN5-216ENST00000484123 351 ntTSL 22.98□□□□□ -1.931e-7■■■■□ 26
NCBP2P52298 TDP1-207ENST00000553617 876 ntTSL 52.69□□□□□ -1.981e-7■■■■□ 26
NCBP2P52298 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -21e-7■■■■□ 26
NCBP2P52298 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.065e-8■■■■□ 26
NCBP2P52298 POLR2H-201ENST00000412877 836 ntTSL 220.3■□□□□ 0.845e-8■■■■□ 26
NCBP2P52298 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.97■□□□□ 0.795e-8■■■■□ 26
NCBP2P52298 ZNF655-213ENST00000425063 4624 ntTSL 3 BASIC7.85□□□□□ -1.156e-19■■■■□ 26
NCBP2P52298 ZNF655-222ENST00000493277 1815 ntAPPRIS ALT2 TSL 2 BASIC7.12□□□□□ -1.276e-19■■■■□ 26
NCBP2P52298 UBE2D2-204ENST00000505007 1170 ntTSL 317.51■□□□□ 0.392e-6■■■■□ 25.9
NCBP2P52298 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.32e-6■■■■□ 25.9
NCBP2P52298 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.082e-6■■■■□ 25.9
NCBP2P52298 TJAP1-206ENST00000372454 581 ntTSL 514.41□□□□□ -0.12e-6■■■■□ 25.9
NCBP2P52298 TJAP1-209ENST00000442878 909 ntTSL 514.35□□□□□ -0.112e-6■■■■□ 25.9
NCBP2P52298 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC12.66□□□□□ -0.382e-6■■■■□ 25.9
NCBP2P52298 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC12.1□□□□□ -0.472e-6■■■■□ 25.9
NCBP2P52298 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.472e-6■■■■□ 25.9
NCBP2P52298 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.482e-6■■■■□ 25.9
NCBP2P52298 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.622e-6■■■■□ 25.9
NCBP2P52298 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.44□□□□□ -0.11e-13■■■■□ 25.8
NCBP2P52298 FAN1-206ENST00000565280 4999 ntTSL 1 (best)13.57□□□□□ -0.241e-13■■■■□ 25.8
NCBP2P52298 FAN1-201ENST00000362065 4891 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.51e-13■■■■□ 25.8
NCBP2P52298 FAN1-203ENST00000561607 2690 ntTSL 1 (best) BASIC11.29□□□□□ -0.61e-13■■■■□ 25.8
NCBP2P52298 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.91□□□□□ -1.781e-13■■■■□ 25.8
NCBP2P52298 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.38e-7■■■■□ 25.8
NCBP2P52298 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.128e-7■■■■□ 25.8
Retrieved 100 of 18,329 protein–RNA pairs in 908.1 ms