RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 NISCHQ9Y2I1 1504 aa32.97■■■□□ 2.87
USF1-205ENST00000473969 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
USF1-205ENST00000473969 ABCC9O60706 1549 aa28.64■■■□□ 2.17
USF1-205ENST00000473969 DCAF8L2P0C7V8 631 aa27.74■■■□□ 2.03
USF1-205ENST00000473969 RB1CC1Q8TDY2 1594 aa27.56■■■□□ 2
USF1-205ENST00000473969 NACADO15069 1562 aa27.53■■■□□ 2
USF1-205ENST00000473969 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.99
USF1-205ENST00000473969 MYO15BQ96JP2 1530 aa27.36■■□□□ 1.97
USF1-205ENST00000473969 DCAF1Q9Y4B6 1507 aa27.26■■□□□ 1.96
USF1-205ENST00000473969 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
USF1-205ENST00000473969 UNC13AQ9UPW8 1703 aa26.79■■□□□ 1.88
USF1-205ENST00000473969 SCRIBQ14160 1630 aa26.73■■□□□ 1.87
USF1-205ENST00000473969 BICRAQ9NZM4 1560 aa26.62■■□□□ 1.85
USF1-205ENST00000473969 SHROOM4Q9ULL8 1493 aa26.43■■□□□ 1.82
USF1-205ENST00000473969 DNAJC5BQ9UF47 199 aa26.37■■□□□ 1.81
USF1-205ENST00000473969 EIF4G1Q04637 1599 aaKnown RBP25.97■■□□□ 1.75
USF1-205ENST00000473969 CC2D2AQ9P2K1 1620 aa25.85■■□□□ 1.73
USF1-205ENST00000473969 CECR2Q9BXF3 1484 aa25.73■■□□□ 1.71
USF1-205ENST00000473969 BAZ1AQ9NRL2 1556 aaPredicted RBP25.58■■□□□ 1.69
USF1-205ENST00000473969 SMARCA4P51532 1647 aa25.55■■□□□ 1.68
USF1-205ENST00000473969 SMARCA2P51531 1590 aa25.43■■□□□ 1.66
USF1-205ENST00000473969 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
USF1-205ENST00000473969 NCAPD3P42695 1498 aa25.4■■□□□ 1.66
USF1-205ENST00000473969 MROH2BQ7Z745 1585 aa25.39■■□□□ 1.66
USF1-205ENST00000473969 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
USF1-205ENST00000473969 BAZ1BQ9UIG0 1483 aaKnown RBP25.26■■□□□ 1.63
USF1-205ENST00000473969 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
USF1-205ENST00000473969 RSF1Q96T23 1441 aaPredicted RBP25.16■■□□□ 1.62
USF1-205ENST00000473969 WIZO95785 1651 aa25.11■■□□□ 1.61
USF1-205ENST00000473969 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
USF1-205ENST00000473969 NESP48681 1621 aa24.75■■□□□ 1.55
USF1-205ENST00000473969 ERCC6Q03468 1493 aa24.75■■□□□ 1.55
USF1-205ENST00000473969 LAMC3Q9Y6N6 1575 aa24.72■■□□□ 1.55
USF1-205ENST00000473969 SUPT5HO00267 1087 aaKnown RBP24.72■■□□□ 1.55
USF1-205ENST00000473969 CADPSQ9ULU8 1353 aa24.71■■□□□ 1.55
USF1-205ENST00000473969 PDS5BQ9NTI5 1447 aa24.64■■□□□ 1.54
USF1-205ENST00000473969 CCDC88BA6NC98 1476 aa24.6■■□□□ 1.53
USF1-205ENST00000473969 DNAJC5Q9H3Z4 198 aa24.57■■□□□ 1.52
USF1-205ENST00000473969 CFTRP13569 1480 aa24.53■■□□□ 1.52
USF1-205ENST00000473969 KIF21AQ7Z4S6 1674 aa24.41■■□□□ 1.5
USF1-205ENST00000473969 FANCD2Q9BXW9 1451 aa24.41■■□□□ 1.5
USF1-205ENST00000473969 CUX2O14529 1486 aa24.4■■□□□ 1.5
USF1-205ENST00000473969 CEP164Q9UPV0 1460 aa24.39■■□□□ 1.5
USF1-205ENST00000473969 MRC2Q9UBG0 1479 aa24.32■■□□□ 1.48
USF1-205ENST00000473969 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
USF1-205ENST00000473969 PRDM2Q13029 1718 aa24.26■■□□□ 1.47
USF1-205ENST00000473969 WDR62O43379 1518 aa24.19■■□□□ 1.46
USF1-205ENST00000473969 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
USF1-205ENST00000473969 ABCC8Q09428 1581 aa24.07■■□□□ 1.44
USF1-205ENST00000473969 TOPBP1Q92547 1522 aa24■■□□□ 1.43
USF1-205ENST00000473969 DNMBPQ6XZF7 1577 aa23.97■■□□□ 1.43
USF1-205ENST00000473969 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
USF1-205ENST00000473969 CUX1P39880 1505 aa23.82■■□□□ 1.4
USF1-205ENST00000473969 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
USF1-205ENST00000473969 SOGA1O94964 1423 aa23.78■■□□□ 1.4
USF1-205ENST00000473969 WRNQ14191 1432 aaPredicted RBP eCLIP23.76■■□□□ 1.39
USF1-205ENST00000473969 FGD5Q6ZNL6 1462 aa23.76■■□□□ 1.39
USF1-205ENST00000473969 RAD54L2Q9Y4B4 1467 aa23.71■■□□□ 1.39
USF1-205ENST00000473969 ZNF608Q9ULD9 1512 aaPredicted RBP23.7■■□□□ 1.38
USF1-205ENST00000473969 TARBP1Q13395 1621 aaKnown RBP23.68■■□□□ 1.38
USF1-205ENST00000473969 TOP2BQ02880 1626 aa23.64■■□□□ 1.38
USF1-205ENST00000473969 AQRO60306 1485 aaKnown RBP eCLIP23.63■■□□□ 1.373e-7■■■■■ 35.2
USF1-205ENST00000473969 TDRD9Q8NDG6 1382 aaKnown RBP23.63■■□□□ 1.37
USF1-205ENST00000473969 BIVM-ERCC5R4GMW8 1640 aa23.61■■□□□ 1.37
USF1-205ENST00000473969 SYNJ1O43426 1573 aa23.61■■□□□ 1.37
USF1-205ENST00000473969 EIF4G3O43432 1585 aaKnown RBP23.6■■□□□ 1.37
USF1-205ENST00000473969 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
USF1-205ENST00000473969 ABCA10Q8WWZ4 1543 aa23.53■■□□□ 1.36
USF1-205ENST00000473969 OSCARQ8IYS5 282 aa23.5■■□□□ 1.35
USF1-205ENST00000473969 GAPVD1Q14C86 1478 aa23.48■■□□□ 1.35
USF1-205ENST00000473969 FBLN2P98095 1184 aa23.47■■□□□ 1.35
USF1-205ENST00000473969 GRIN2BQ13224 1484 aa23.47■■□□□ 1.35
USF1-205ENST00000473969 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
USF1-205ENST00000473969 CHMP7Q8WUX9 453 aaPredicted RBP23.4■■□□□ 1.34
USF1-205ENST00000473969 MAGI1Q96QZ7 1491 aaPredicted RBP23.38■■□□□ 1.33
USF1-205ENST00000473969 ABCA5Q8WWZ7 1642 aa23.37■■□□□ 1.33
USF1-205ENST00000473969 TRIM41Q8WV44 630 aa23.35■■□□□ 1.33
USF1-205ENST00000473969 PBRM1Q86U86 1689 aa23.33■■□□□ 1.33
USF1-205ENST00000473969 KIF27Q86VH2 1401 aa23.3■■□□□ 1.32
USF1-205ENST00000473969 SYNJ2O15056 1496 aa23.29■■□□□ 1.32
USF1-205ENST00000473969 CHD1O14646 1710 aa23.27■■□□□ 1.32
USF1-205ENST00000473969 ERICH3Q5RHP9 1530 aa23.26■■□□□ 1.31
USF1-205ENST00000473969 FHAD1B1AJZ9 1412 aa23.22■■□□□ 1.31
USF1-205ENST00000473969 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
USF1-205ENST00000473969 IGF1RP08069 1367 aa23.15■■□□□ 1.3
USF1-205ENST00000473969 GRIN2AQ12879 1464 aa23.14■■□□□ 1.29
USF1-205ENST00000473969 CARMIL1Q5VZK9 1371 aa23.06■■□□□ 1.28
USF1-205ENST00000473969 CUL7Q14999 1698 aa23.05■■□□□ 1.28
USF1-205ENST00000473969 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
USF1-205ENST00000473969 CLASP1Q7Z460 1538 aa23.03■■□□□ 1.28
USF1-205ENST00000473969 NUP160Q12769 1436 aa23.01■■□□□ 1.27
USF1-205ENST00000473969 RUSC2Q8N2Y8 1516 aa23.01■■□□□ 1.27
USF1-205ENST00000473969 ARHGEF11O15085 1522 aa22.99■■□□□ 1.27
USF1-205ENST00000473969 CEP170Q5SW79 1584 aa22.97■■□□□ 1.27
USF1-205ENST00000473969 RIMBP3CA6NJZ7 1639 aa22.97■■□□□ 1.27
USF1-205ENST00000473969 RIMBP3BA6NNM3 1639 aa22.97■■□□□ 1.27
USF1-205ENST00000473969 RIMBP3Q9UFD9 1639 aa22.97■■□□□ 1.27
USF1-205ENST00000473969 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
USF1-205ENST00000473969 CYB5RLQ6IPT4 315 aa22.9■■□□□ 1.26
USF1-205ENST00000473969 EEA1Q15075 1411 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms