RNA–Protein interactions for RNA: ENST00000530604.1

RSF1-208, Transcript of remodeling and spacing factor 1, human

TSL 2

Gene RSF1, Length 520 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RSF1-208	ENST00000530604	NISCH	Q9Y2I1	1504 aa		43.99	■■■■■ 4.63
RSF1-208	ENST00000530604	ABCC9	O60706	1549 aa		39.5	■■■■□ 3.91
RSF1-208	ENST00000530604	CCDC180	Q9P1Z9	1646 aa		39.47	■■■■□ 3.91
RSF1-208	ENST00000530604	RB1CC1	Q8TDY2	1594 aa		37.59	■■■■□ 3.61
RSF1-208	ENST00000530604	NACAD	O15069	1562 aa		37.34	■■■■□ 3.57
RSF1-208	ENST00000530604	DNAJC5B	Q9UF47	199 aa		37.15	■■■■□ 3.54
RSF1-208	ENST00000530604	DCAF8L2	P0C7V8	631 aa		37.14	■■■■□ 3.54
RSF1-208	ENST00000530604	MYO15B	Q96JP2	1530 aa		36.84	■■■■□ 3.49
RSF1-208	ENST00000530604	PABPN1	Q86U42	306 aa	Known RBP eCLIP	36.8	■■■■□ 3.48
RSF1-208	ENST00000530604	UNC13A	Q9UPW8	1703 aa		36.76	■■■■□ 3.47
RSF1-208	ENST00000530604	BICRA	Q9NZM4	1560 aa		36.53	■■■■□ 3.44
RSF1-208	ENST00000530604	ZCCHC6	Q5VYS8	1495 aa	Known RBP	36.43	■■■■□ 3.42
RSF1-208	ENST00000530604	DCAF1	Q9Y4B6	1507 aa		36.34	■■■■□ 3.41
RSF1-208	ENST00000530604	SHROOM4	Q9ULL8	1493 aa		36.01	■■■■□ 3.36
RSF1-208	ENST00000530604	SCRIB	Q14160	1630 aa		35.95	■■■■□ 3.35
RSF1-208	ENST00000530604	CC2D2A	Q9P2K1	1620 aa		35.69	■■■■□ 3.3
RSF1-208	ENST00000530604	EIF4G1	Q04637	1599 aa	Known RBP	35.61	■■■■□ 3.29
RSF1-208	ENST00000530604	CECR2	Q9BXF3	1484 aa		35.6	■■■■□ 3.29
RSF1-208	ENST00000530604	NCAPD3	P42695	1498 aa		34.49	■■■■□ 3.11
RSF1-208	ENST00000530604	ATAD2B	Q9ULI0	1458 aa		34.37	■■■■□ 3.09
RSF1-208	ENST00000530604	SMARCA4	P51532	1647 aa		34.31	■■■■□ 3.08
RSF1-208	ENST00000530604	SMARCA2	P51531	1590 aa		34.25	■■■■□ 3.07
RSF1-208	ENST00000530604	HMGXB3	Q12766	1538 aa		34.2	■■■■□ 3.07
RSF1-208	ENST00000530604	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34.14	■■■■□ 3.06
RSF1-208	ENST00000530604	DNAJC5	Q9H3Z4	198 aa		34.13	■■■■□ 3.05
RSF1-208	ENST00000530604	ERCC6	Q03468	1493 aa		34.09	■■■■□ 3.05
RSF1-208	ENST00000530604	CUX2	O14529	1486 aa		34.07	■■■■□ 3.04
RSF1-208	ENST00000530604	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.01	■■■■□ 3.04
RSF1-208	ENST00000530604	PEG3	Q9GZU2	1588 aa		34	■■■■□ 3.03
RSF1-208	ENST00000530604	NES	P48681	1621 aa		33.94	■■■■□ 3.02
RSF1-208	ENST00000530604	MROH2B	Q7Z745	1585 aa		33.89	■■■■□ 3.02
RSF1-208	ENST00000530604	LAMC3	Q9Y6N6	1575 aa		33.69	■■■□□ 2.98
RSF1-208	ENST00000530604	THOC2	Q8NI27	1593 aa	Known RBP	33.59	■■■□□ 2.97
RSF1-208	ENST00000530604	PDS5B	Q9NTI5	1447 aa		33.51	■■■□□ 2.95
RSF1-208	ENST00000530604	WIZ	O95785	1651 aa		33.48	■■■□□ 2.95
RSF1-208	ENST00000530604	KIF21A	Q7Z4S6	1674 aa		33.48	■■■□□ 2.95
RSF1-208	ENST00000530604	CADPS	Q9ULU8	1353 aa		33.44	■■■□□ 2.94
RSF1-208	ENST00000530604	MRC2	Q9UBG0	1479 aa		33.21	■■■□□ 2.91
RSF1-208	ENST00000530604	RSF1	Q96T23	1441 aa	Predicted RBP	33.19	■■■□□ 2.9
RSF1-208	ENST00000530604	WDR62	O43379	1518 aa		33.13	■■■□□ 2.89
RSF1-208	ENST00000530604	CEP164	Q9UPV0	1460 aa		33.06	■■■□□ 2.88
RSF1-208	ENST00000530604	CFTR	P13569	1480 aa		33.05	■■■□□ 2.88
RSF1-208	ENST00000530604	TOP2A	P11388	1531 aa	Known RBP	33.04	■■■□□ 2.88
RSF1-208	ENST00000530604	FANCD2	Q9BXW9	1451 aa		33.04	■■■□□ 2.88
RSF1-208	ENST00000530604	URB2	Q14146	1524 aa	Known RBP	32.78	■■■□□ 2.84
RSF1-208	ENST00000530604	CCDC88B	A6NC98	1476 aa		32.69	■■■□□ 2.82
RSF1-208	ENST00000530604	PRDM2	Q13029	1718 aa		32.68	■■■□□ 2.82
RSF1-208	ENST00000530604	TRIM41	Q8WV44	630 aa		32.57	■■■□□ 2.8
RSF1-208	ENST00000530604	OSCAR	Q8IYS5	282 aa		32.54	■■■□□ 2.8
RSF1-208	ENST00000530604	IFT140	Q96RY7	1462 aa		32.42	■■■□□ 2.78
RSF1-208	ENST00000530604	TOPBP1	Q92547	1522 aa		32.41	■■■□□ 2.78
RSF1-208	ENST00000530604	ZNF608	Q9ULD9	1512 aa	Predicted RBP	32.38	■■■□□ 2.77
RSF1-208	ENST00000530604	ABCC8	Q09428	1581 aa		32.35	■■■□□ 2.77
RSF1-208	ENST00000530604	DNMBP	Q6XZF7	1577 aa		32.28	■■■□□ 2.76
RSF1-208	ENST00000530604	EIF4G3	O43432	1585 aa	Known RBP	32.17	■■■□□ 2.74
RSF1-208	ENST00000530604	TARBP1	Q13395	1621 aa	Known RBP	32.14	■■■□□ 2.74
RSF1-208	ENST00000530604	RIMBP3C	A6NJZ7	1639 aa		32.09	■■■□□ 2.73
RSF1-208	ENST00000530604	RIMBP3B	A6NNM3	1639 aa		32.09	■■■□□ 2.73
RSF1-208	ENST00000530604	RIMBP3	Q9UFD9	1639 aa		32.09	■■■□□ 2.73
RSF1-208	ENST00000530604	AQR	O60306	1485 aa	Known RBP eCLIP	32.08	■■■□□ 2.73	6e-8	■■■■■ 31.2
RSF1-208	ENST00000530604	POLA1	P09884	1462 aa	Predicted RBP	32.08	■■■□□ 2.73
RSF1-208	ENST00000530604	ARHGEF11	O15085	1522 aa		31.98	■■■□□ 2.71
RSF1-208	ENST00000530604	RAD54L2	Q9Y4B4	1467 aa		31.97	■■■□□ 2.71
RSF1-208	ENST00000530604	CHD1	O14646	1710 aa		31.95	■■■□□ 2.71
RSF1-208	ENST00000530604	SOGA1	O94964	1423 aa		31.94	■■■□□ 2.7
RSF1-208	ENST00000530604	TDRD9	Q8NDG6	1382 aa	Known RBP	31.89	■■■□□ 2.7
RSF1-208	ENST00000530604	FGD5	Q6ZNL6	1462 aa		31.87	■■■□□ 2.69
RSF1-208	ENST00000530604	FBLN2	P98095	1184 aa		31.86	■■■□□ 2.69
RSF1-208	ENST00000530604	CUX1	P39880	1505 aa		31.85	■■■□□ 2.69
RSF1-208	ENST00000530604	WDR97	A6NE52	1622 aa		31.79	■■■□□ 2.68
RSF1-208	ENST00000530604	CYB5RL	Q6IPT4	315 aa		31.77	■■■□□ 2.68
RSF1-208	ENST00000530604	SNAPC4	Q5SXM2	1469 aa		31.73	■■■□□ 2.67
RSF1-208	ENST00000530604	SUPT5H	O00267	1087 aa	Known RBP	31.68	■■■□□ 2.66
RSF1-208	ENST00000530604	ARAP1	Q96P48	1450 aa		31.67	■■■□□ 2.66
RSF1-208	ENST00000530604	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.66	■■■□□ 2.66
RSF1-208	ENST00000530604	GRIN2B	Q13224	1484 aa		31.65	■■■□□ 2.66
RSF1-208	ENST00000530604	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.64	■■■□□ 2.66
RSF1-208	ENST00000530604	CLASP1	Q7Z460	1538 aa		31.59	■■■□□ 2.65
RSF1-208	ENST00000530604	SYNJ2	O15056	1496 aa		31.56	■■■□□ 2.64
RSF1-208	ENST00000530604	SYNJ1	O43426	1573 aa		31.56	■■■□□ 2.64
RSF1-208	ENST00000530604	GAPVD1	Q14C86	1478 aa		31.55	■■■□□ 2.64
RSF1-208	ENST00000530604	PBRM1	Q86U86	1689 aa		31.51	■■■□□ 2.64
RSF1-208	ENST00000530604	ABCA10	Q8WWZ4	1543 aa		31.51	■■■□□ 2.63
RSF1-208	ENST00000530604	ABCA5	Q8WWZ7	1642 aa		31.46	■■■□□ 2.63
RSF1-208	ENST00000530604	TRH	P20396	242 aa	Predicted RBP	31.41	■■■□□ 2.62
RSF1-208	ENST00000530604	WRN	Q14191	1432 aa	Predicted RBP eCLIP	31.39	■■■□□ 2.62
RSF1-208	ENST00000530604	TOP2B	Q02880	1626 aa		31.32	■■■□□ 2.6
RSF1-208	ENST00000530604	BIVM-ERCC5	R4GMW8	1640 aa		31.32	■■■□□ 2.6
RSF1-208	ENST00000530604	GRIN2A	Q12879	1464 aa		31.25	■■■□□ 2.59
RSF1-208	ENST00000530604	ADAMTS12	P58397	1594 aa		31.22	■■■□□ 2.59
RSF1-208	ENST00000530604	NUP160	Q12769	1436 aa		31.15	■■■□□ 2.58
RSF1-208	ENST00000530604	FHAD1	B1AJZ9	1412 aa		31.15	■■■□□ 2.58
RSF1-208	ENST00000530604	CEP170	Q5SW79	1584 aa		31.13	■■■□□ 2.57
RSF1-208	ENST00000530604	ERICH3	Q5RHP9	1530 aa		31.12	■■■□□ 2.57
RSF1-208	ENST00000530604	ERCC6L2	Q5T890	1561 aa		31.1	■■■□□ 2.57
RSF1-208	ENST00000530604	SHROOM2	Q13796	1616 aa		31.02	■■■□□ 2.56
RSF1-208	ENST00000530604	JPH4	Q96JJ6	628 aa		30.86	■■■□□ 2.53
RSF1-208	ENST00000530604	PRG4	Q92954	1404 aa	Predicted RBP	30.86	■■■□□ 2.53
RSF1-208	ENST00000530604	RUSC2	Q8N2Y8	1516 aa		30.77	■■■□□ 2.52
RSF1-208	ENST00000530604	IGF1R	P08069	1367 aa		30.74	■■■□□ 2.51

Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms