RNA–Protein interactions for RNA: ENST00000534633.5

USF1-211, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 610 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-211ENST00000534633 NISCHQ9Y2I1 1504 aa31.55■■■□□ 2.64
USF1-211ENST00000534633 CCDC180Q9P1Z9 1646 aa28.43■■■□□ 2.14
USF1-211ENST00000534633 ABCC9O60706 1549 aa28.32■■■□□ 2.12
USF1-211ENST00000534633 RB1CC1Q8TDY2 1594 aa27.02■■□□□ 1.92
USF1-211ENST00000534633 NACADO15069 1562 aa26.83■■□□□ 1.89
USF1-211ENST00000534633 DNAJC5BQ9UF47 199 aa26.54■■□□□ 1.84
USF1-211ENST00000534633 DCAF8L2P0C7V8 631 aa26.53■■□□□ 1.84
USF1-211ENST00000534633 UNC13AQ9UPW8 1703 aa26.48■■□□□ 1.83
USF1-211ENST00000534633 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
USF1-211ENST00000534633 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
USF1-211ENST00000534633 BICRAQ9NZM4 1560 aa26.22■■□□□ 1.79
USF1-211ENST00000534633 ZCCHC6Q5VYS8 1495 aaKnown RBP26.16■■□□□ 1.78
USF1-211ENST00000534633 DCAF1Q9Y4B6 1507 aa26.11■■□□□ 1.77
USF1-211ENST00000534633 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
USF1-211ENST00000534633 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
USF1-211ENST00000534633 CC2D2AQ9P2K1 1620 aa25.64■■□□□ 1.7
USF1-211ENST00000534633 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
USF1-211ENST00000534633 CECR2Q9BXF3 1484 aa25.53■■□□□ 1.68
USF1-211ENST00000534633 NCAPD3P42695 1498 aa24.73■■□□□ 1.55
USF1-211ENST00000534633 SMARCA4P51532 1647 aa24.65■■□□□ 1.54
USF1-211ENST00000534633 ATAD2BQ9ULI0 1458 aa24.64■■□□□ 1.53
USF1-211ENST00000534633 SMARCA2P51531 1590 aa24.62■■□□□ 1.53
USF1-211ENST00000534633 HMGXB3Q12766 1538 aa24.59■■□□□ 1.53
USF1-211ENST00000534633 BAZ1AQ9NRL2 1556 aaPredicted RBP24.52■■□□□ 1.52
USF1-211ENST00000534633 CUX2O14529 1486 aa24.47■■□□□ 1.51
USF1-211ENST00000534633 ERCC6Q03468 1493 aa24.47■■□□□ 1.51
USF1-211ENST00000534633 PEG3Q9GZU2 1588 aa24.44■■□□□ 1.5
USF1-211ENST00000534633 DNAJC5Q9H3Z4 198 aa24.43■■□□□ 1.5
USF1-211ENST00000534633 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
USF1-211ENST00000534633 NESP48681 1621 aa24.32■■□□□ 1.48
USF1-211ENST00000534633 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
USF1-211ENST00000534633 LAMC3Q9Y6N6 1575 aa24.23■■□□□ 1.47
USF1-211ENST00000534633 THOC2Q8NI27 1593 aaKnown RBP24.16■■□□□ 1.46
USF1-211ENST00000534633 KIF21AQ7Z4S6 1674 aa24.1■■□□□ 1.45
USF1-211ENST00000534633 WIZO95785 1651 aa24.04■■□□□ 1.44
USF1-211ENST00000534633 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
USF1-211ENST00000534633 CADPSQ9ULU8 1353 aa23.95■■□□□ 1.42
USF1-211ENST00000534633 MRC2Q9UBG0 1479 aa23.84■■□□□ 1.41
USF1-211ENST00000534633 WDR62O43379 1518 aa23.8■■□□□ 1.4
USF1-211ENST00000534633 RSF1Q96T23 1441 aaPredicted RBP23.76■■□□□ 1.39
USF1-211ENST00000534633 CEP164Q9UPV0 1460 aa23.75■■□□□ 1.39
USF1-211ENST00000534633 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
USF1-211ENST00000534633 CFTRP13569 1480 aa23.69■■□□□ 1.38
USF1-211ENST00000534633 FANCD2Q9BXW9 1451 aa23.69■■□□□ 1.38
USF1-211ENST00000534633 PRDM2Q13029 1718 aa23.61■■□□□ 1.37
USF1-211ENST00000534633 URB2Q14146 1524 aaKnown RBP23.5■■□□□ 1.35
USF1-211ENST00000534633 CCDC88BA6NC98 1476 aa23.43■■□□□ 1.34
USF1-211ENST00000534633 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
USF1-211ENST00000534633 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
USF1-211ENST00000534633 IFT140Q96RY7 1462 aa23.26■■□□□ 1.31
USF1-211ENST00000534633 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
USF1-211ENST00000534633 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
USF1-211ENST00000534633 ZNF608Q9ULD9 1512 aaPredicted RBP23.2■■□□□ 1.3
USF1-211ENST00000534633 DNMBPQ6XZF7 1577 aa23.19■■□□□ 1.3
USF1-211ENST00000534633 EIF4G3O43432 1585 aaKnown RBP23.14■■□□□ 1.29
USF1-211ENST00000534633 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
USF1-211ENST00000534633 RIMBP3CA6NJZ7 1639 aa23.06■■□□□ 1.28
USF1-211ENST00000534633 RIMBP3BA6NNM3 1639 aa23.06■■□□□ 1.28
USF1-211ENST00000534633 RIMBP3Q9UFD9 1639 aa23.06■■□□□ 1.28
USF1-211ENST00000534633 POLA1P09884 1462 aaPredicted RBP23.01■■□□□ 1.27
USF1-211ENST00000534633 CHD1O14646 1710 aa23■■□□□ 1.27
USF1-211ENST00000534633 AQRO60306 1485 aaKnown RBP eCLIP22.98■■□□□ 1.271e-6■■■■□ 20
USF1-211ENST00000534633 ARHGEF11O15085 1522 aa22.96■■□□□ 1.27
USF1-211ENST00000534633 WDR97A6NE52 1622 aa22.9■■□□□ 1.26
USF1-211ENST00000534633 RAD54L2Q9Y4B4 1467 aa22.89■■□□□ 1.25
USF1-211ENST00000534633 SOGA1O94964 1423 aa22.89■■□□□ 1.25
USF1-211ENST00000534633 FGD5Q6ZNL6 1462 aa22.85■■□□□ 1.25
USF1-211ENST00000534633 CUX1P39880 1505 aa22.83■■□□□ 1.25
USF1-211ENST00000534633 TDRD9Q8NDG6 1382 aaKnown RBP22.81■■□□□ 1.24
USF1-211ENST00000534633 FBLN2P98095 1184 aa22.79■■□□□ 1.24
USF1-211ENST00000534633 SNAPC4Q5SXM2 1469 aa22.76■■□□□ 1.23
USF1-211ENST00000534633 MAGI1Q96QZ7 1491 aaPredicted RBP22.73■■□□□ 1.23
USF1-211ENST00000534633 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
USF1-211ENST00000534633 CYB5RLQ6IPT4 315 aa22.72■■□□□ 1.23
USF1-211ENST00000534633 GRIN2BQ13224 1484 aa22.71■■□□□ 1.23
USF1-211ENST00000534633 PBRM1Q86U86 1689 aa22.7■■□□□ 1.22
USF1-211ENST00000534633 SYNJ1O43426 1573 aa22.69■■□□□ 1.22
USF1-211ENST00000534633 CLASP1Q7Z460 1538 aa22.69■■□□□ 1.22
USF1-211ENST00000534633 CHMP7Q8WUX9 453 aaPredicted RBP22.65■■□□□ 1.22
USF1-211ENST00000534633 SYNJ2O15056 1496 aa22.65■■□□□ 1.22
USF1-211ENST00000534633 GAPVD1Q14C86 1478 aa22.62■■□□□ 1.21
USF1-211ENST00000534633 ABCA5Q8WWZ7 1642 aa22.62■■□□□ 1.21
USF1-211ENST00000534633 SUPT5HO00267 1087 aaKnown RBP22.62■■□□□ 1.21
USF1-211ENST00000534633 ABCA10Q8WWZ4 1543 aa22.62■■□□□ 1.21
USF1-211ENST00000534633 BIVM-ERCC5R4GMW8 1640 aa22.53■■□□□ 1.2
USF1-211ENST00000534633 TOP2BQ02880 1626 aa22.5■■□□□ 1.19
USF1-211ENST00000534633 WRNQ14191 1432 aaPredicted RBP eCLIP22.49■■□□□ 1.19
USF1-211ENST00000534633 TRHP20396 242 aaPredicted RBP22.48■■□□□ 1.19
USF1-211ENST00000534633 ADAMTS12P58397 1594 aa22.43■■□□□ 1.18
USF1-211ENST00000534633 GRIN2AQ12879 1464 aa22.42■■□□□ 1.18
USF1-211ENST00000534633 CEP170Q5SW79 1584 aa22.36■■□□□ 1.17
USF1-211ENST00000534633 ERICH3Q5RHP9 1530 aa22.35■■□□□ 1.17
USF1-211ENST00000534633 NUP160Q12769 1436 aa22.34■■□□□ 1.17
USF1-211ENST00000534633 FHAD1B1AJZ9 1412 aa22.33■■□□□ 1.17
USF1-211ENST00000534633 SHROOM2Q13796 1616 aa22.31■■□□□ 1.16
USF1-211ENST00000534633 ERCC6L2Q5T890 1561 aa22.3■■□□□ 1.16
USF1-211ENST00000534633 RUSC2Q8N2Y8 1516 aa22.13■■□□□ 1.13
USF1-211ENST00000534633 PRG4Q92954 1404 aaPredicted RBP22.11■■□□□ 1.13
USF1-211ENST00000534633 JPH4Q96JJ6 628 aa22.07■■□□□ 1.12
USF1-211ENST00000534633 CUL7Q14999 1698 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms