RNA–Protein interactions for RNA: ENST00000368021.7

USF1-203, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,807 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-203ENST00000368021 NISCHQ9Y2I1 1504 aa27.58■■■□□ 2
USF1-203ENST00000368021 CCDC180Q9P1Z9 1646 aa24.37■■□□□ 1.49
USF1-203ENST00000368021 ABCC9O60706 1549 aa23.98■■□□□ 1.43
USF1-203ENST00000368021 DCAF8L2P0C7V8 631 aa23.28■■□□□ 1.32
USF1-203ENST00000368021 ZCCHC6Q5VYS8 1495 aaKnown RBP23.13■■□□□ 1.29
USF1-203ENST00000368021 RB1CC1Q8TDY2 1594 aa22.97■■□□□ 1.27
USF1-203ENST00000368021 NACADO15069 1562 aa22.94■■□□□ 1.26
USF1-203ENST00000368021 DCAF1Q9Y4B6 1507 aa22.84■■□□□ 1.25
USF1-203ENST00000368021 MYO15BQ96JP2 1530 aa22.77■■□□□ 1.24
USF1-203ENST00000368021 PABPN1Q86U42 306 aaKnown RBP eCLIP22.51■■□□□ 1.195e-6■■■■□ 22.2
USF1-203ENST00000368021 UNC13AQ9UPW8 1703 aa22.45■■□□□ 1.18
USF1-203ENST00000368021 SCRIBQ14160 1630 aa22.4■■□□□ 1.18
USF1-203ENST00000368021 BICRAQ9NZM4 1560 aa22.29■■□□□ 1.16
USF1-203ENST00000368021 SHROOM4Q9ULL8 1493 aa22.27■■□□□ 1.15
USF1-203ENST00000368021 DNAJC5BQ9UF47 199 aa22■■□□□ 1.11
USF1-203ENST00000368021 EIF4G1Q04637 1599 aaKnown RBP21.72■■□□□ 1.07
USF1-203ENST00000368021 CC2D2AQ9P2K1 1620 aa21.62■■□□□ 1.05
USF1-203ENST00000368021 CECR2Q9BXF3 1484 aa21.55■■□□□ 1.04
USF1-203ENST00000368021 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.02
USF1-203ENST00000368021 SMARCA4P51532 1647 aa21.36■■□□□ 1.01
USF1-203ENST00000368021 BAZ1AQ9NRL2 1556 aaPredicted RBP21.35■■□□□ 1.01
USF1-203ENST00000368021 RSF1Q96T23 1441 aaPredicted RBP21.31■■□□□ 1
USF1-203ENST00000368021 MROH2BQ7Z745 1585 aa21.3■■□□□ 1
USF1-203ENST00000368021 ATAD2BQ9ULI0 1458 aa21.26■□□□□ 0.99
USF1-203ENST00000368021 NCAPD3P42695 1498 aa21.21■□□□□ 0.99
USF1-203ENST00000368021 SMARCA2P51531 1590 aa21.19■□□□□ 0.98
USF1-203ENST00000368021 BAZ1BQ9UIG0 1483 aaKnown RBP21.11■□□□□ 0.97
USF1-203ENST00000368021 PEG3Q9GZU2 1588 aa21.1■□□□□ 0.97
USF1-203ENST00000368021 WIZO95785 1651 aa21.08■□□□□ 0.96
USF1-203ENST00000368021 HMGXB3Q12766 1538 aa21.06■□□□□ 0.96
USF1-203ENST00000368021 TOP2AP11388 1531 aaKnown RBP20.88■□□□□ 0.93
USF1-203ENST00000368021 NESP48681 1621 aa20.78■□□□□ 0.92
USF1-203ENST00000368021 ERCC6Q03468 1493 aa20.65■□□□□ 0.9
USF1-203ENST00000368021 CADPSQ9ULU8 1353 aa20.65■□□□□ 0.9
USF1-203ENST00000368021 CCDC88BA6NC98 1476 aa20.64■□□□□ 0.89
USF1-203ENST00000368021 LAMC3Q9Y6N6 1575 aa20.61■□□□□ 0.89
USF1-203ENST00000368021 PDS5BQ9NTI5 1447 aa20.52■□□□□ 0.88
USF1-203ENST00000368021 CFTRP13569 1480 aa20.5■□□□□ 0.87
USF1-203ENST00000368021 CHIC1Q5VXU3 224 aa20.48■□□□□ 0.87
USF1-203ENST00000368021 KIF21AQ7Z4S6 1674 aa20.45■□□□□ 0.86
USF1-203ENST00000368021 FANCD2Q9BXW9 1451 aa20.41■□□□□ 0.86
USF1-203ENST00000368021 CEP164Q9UPV0 1460 aa20.35■□□□□ 0.85
USF1-203ENST00000368021 THOC2Q8NI27 1593 aaKnown RBP20.32■□□□□ 0.84
USF1-203ENST00000368021 CUX2O14529 1486 aa20.29■□□□□ 0.84
USF1-203ENST00000368021 MRC2Q9UBG0 1479 aa20.29■□□□□ 0.84
USF1-203ENST00000368021 PRDM2Q13029 1718 aa20.25■□□□□ 0.83
USF1-203ENST00000368021 WDR62O43379 1518 aa20.19■□□□□ 0.82
USF1-203ENST00000368021 URB2Q14146 1524 aaKnown RBP20.19■□□□□ 0.82
USF1-203ENST00000368021 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
USF1-203ENST00000368021 ABCC8Q09428 1581 aa20.13■□□□□ 0.81
USF1-203ENST00000368021 TOPBP1Q92547 1522 aa20.08■□□□□ 0.8
USF1-203ENST00000368021 WRNQ14191 1432 aaPredicted RBP eCLIP20.07■□□□□ 0.8
USF1-203ENST00000368021 DNMBPQ6XZF7 1577 aa20.02■□□□□ 0.79
USF1-203ENST00000368021 SYNJ1O43426 1573 aa19.96■□□□□ 0.79
USF1-203ENST00000368021 CUX1P39880 1505 aa19.96■□□□□ 0.79
USF1-203ENST00000368021 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
USF1-203ENST00000368021 POLA1P09884 1462 aaPredicted RBP19.92■□□□□ 0.78
USF1-203ENST00000368021 BIVM-ERCC5R4GMW8 1640 aa19.91■□□□□ 0.78
USF1-203ENST00000368021 IFT140Q96RY7 1462 aa19.9■□□□□ 0.78
USF1-203ENST00000368021 FGD5Q6ZNL6 1462 aa19.89■□□□□ 0.78
USF1-203ENST00000368021 RAD54L2Q9Y4B4 1467 aa19.89■□□□□ 0.78
USF1-203ENST00000368021 ZNF608Q9ULD9 1512 aaPredicted RBP19.88■□□□□ 0.77
USF1-203ENST00000368021 SOGA1O94964 1423 aa19.87■□□□□ 0.77
USF1-203ENST00000368021 AQRO60306 1485 aaKnown RBP eCLIP19.81■□□□□ 0.763e-7■■■■■ 35.2
USF1-203ENST00000368021 TARBP1Q13395 1621 aaKnown RBP19.81■□□□□ 0.76
USF1-203ENST00000368021 TDRD9Q8NDG6 1382 aaKnown RBP19.81■□□□□ 0.76
USF1-203ENST00000368021 EEA1Q15075 1411 aa19.78■□□□□ 0.76
USF1-203ENST00000368021 EIF4G3O43432 1585 aaKnown RBP19.74■□□□□ 0.75
USF1-203ENST00000368021 FAM9AQ8IZU1 332 aaPredicted RBP19.72■□□□□ 0.75
USF1-203ENST00000368021 DNAJC5Q9H3Z4 198 aa19.69■□□□□ 0.74
USF1-203ENST00000368021 ABCA10Q8WWZ4 1543 aa19.66■□□□□ 0.74
USF1-203ENST00000368021 FBLN2P98095 1184 aa19.66■□□□□ 0.74
USF1-203ENST00000368021 RUSC2Q8N2Y8 1516 aa19.66■□□□□ 0.74
USF1-203ENST00000368021 LOC105371045A0A1W2PR82 267 aa19.63■□□□□ 0.73
USF1-203ENST00000368021 GAPVD1Q14C86 1478 aa19.62■□□□□ 0.73
USF1-203ENST00000368021 WDR97A6NE52 1622 aa19.62■□□□□ 0.73
USF1-203ENST00000368021 CSRNP3Q8WYN3 585 aa19.61■□□□□ 0.73
USF1-203ENST00000368021 OSCARQ8IYS5 282 aa19.6■□□□□ 0.73
USF1-203ENST00000368021 GRIN2BQ13224 1484 aa19.58■□□□□ 0.72
USF1-203ENST00000368021 KIF27Q86VH2 1401 aa19.58■□□□□ 0.72
USF1-203ENST00000368021 SNAPC4Q5SXM2 1469 aa19.57■□□□□ 0.72
USF1-203ENST00000368021 ABCA5Q8WWZ7 1642 aa19.55■□□□□ 0.72
USF1-203ENST00000368021 CHMP7Q8WUX9 453 aaPredicted RBP19.54■□□□□ 0.72
USF1-203ENST00000368021 PBRM1Q86U86 1689 aa19.51■□□□□ 0.71
USF1-203ENST00000368021 KIF21BO75037 1637 aa19.5■□□□□ 0.71
USF1-203ENST00000368021 MAGI1Q96QZ7 1491 aaPredicted RBP19.49■□□□□ 0.71
USF1-203ENST00000368021 CHD1O14646 1710 aa19.47■□□□□ 0.71
USF1-203ENST00000368021 GOLGA3Q08378 1498 aa19.46■□□□□ 0.71
USF1-203ENST00000368021 SYNJ2O15056 1496 aa19.44■□□□□ 0.7
USF1-203ENST00000368021 PRXQ9BXM0 1461 aa19.43■□□□□ 0.7
USF1-203ENST00000368021 IGF1RP08069 1367 aa19.41■□□□□ 0.7
USF1-203ENST00000368021 ERICH3Q5RHP9 1530 aa19.4■□□□□ 0.7
USF1-203ENST00000368021 TNIKQ9UKE5 1360 aa19.38■□□□□ 0.69
USF1-203ENST00000368021 EHMT2Q96KQ7 1210 aa19.38■□□□□ 0.69
USF1-203ENST00000368021 FHAD1B1AJZ9 1412 aa19.37■□□□□ 0.69
USF1-203ENST00000368021 ADAMTS12P58397 1594 aa19.36■□□□□ 0.69
USF1-203ENST00000368021 RAPGEF2Q9Y4G8 1499 aa19.36■□□□□ 0.69
USF1-203ENST00000368021 GRIN2AQ12879 1464 aa19.34■□□□□ 0.69
USF1-203ENST00000368021 UBTFP17480 764 aaKnown RBP19.32■□□□□ 0.68
USF1-203ENST00000368021 CARMIL1Q5VZK9 1371 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 191.1 ms