RNA–Protein interactions for RNA: ENST00000344063.6

RPL28-201, Transcript of ribosomal protein L28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPL28, Length 4,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-201ENST00000344063 NISCHQ9Y2I1 1504 aa19.56■□□□□ 0.72
RPL28-201ENST00000344063 DCAF8L2P0C7V8 631 aa18.43■□□□□ 0.54
RPL28-201ENST00000344063 SUPT5HO00267 1087 aaKnown RBP18.14■□□□□ 0.49
RPL28-201ENST00000344063 SHROOM4Q9ULL8 1493 aa17.99■□□□□ 0.47
RPL28-201ENST00000344063 PCGF6Q9BYE7 350 aa17.6■□□□□ 0.41
RPL28-201ENST00000344063 EHMT2Q96KQ7 1210 aa17.39■□□□□ 0.37
RPL28-201ENST00000344063 HRCP23327 699 aa17.16■□□□□ 0.34
RPL28-201ENST00000344063 PELP1Q8IZL8 1130 aaKnown RBP17.12■□□□□ 0.33
RPL28-201ENST00000344063 PPARGC1BQ86YN6 1023 aaKnown RBP17.09■□□□□ 0.33
RPL28-201ENST00000344063 FAM9AQ8IZU1 332 aaPredicted RBP16.98■□□□□ 0.31
RPL28-201ENST00000344063 TTBK1Q5TCY1 1321 aaPredicted RBP16.89■□□□□ 0.29
RPL28-201ENST00000344063 ZEB1P37275 1124 aaPredicted RBP16.89■□□□□ 0.29
RPL28-201ENST00000344063 TRIM41Q8WV44 630 aa16.89■□□□□ 0.29
RPL28-201ENST00000344063 CHIC1Q5VXU3 224 aa16.83■□□□□ 0.29
RPL28-201ENST00000344063 CENPBP07199 599 aaPredicted RBP16.79■□□□□ 0.28
RPL28-201ENST00000344063 APLP2Q06481 763 aa16.71■□□□□ 0.27
RPL28-201ENST00000344063 CCER1Q8TC90 406 aaPredicted RBP16.7■□□□□ 0.26
RPL28-201ENST00000344063 YTHDC1Q96MU7 727 aaKnown RBP16.69■□□□□ 0.26
RPL28-201ENST00000344063 LOC105371045A0A1W2PR82 267 aa16.68■□□□□ 0.26
RPL28-201ENST00000344063 TRIM26Q12899 539 aaPredicted RBP16.67■□□□□ 0.26
RPL28-201ENST00000344063 MYT1Q01538 1121 aa16.62■□□□□ 0.25
RPL28-201ENST00000344063 UBTFP17480 764 aaKnown RBP16.41■□□□□ 0.22
RPL28-201ENST00000344063 ZCCHC6Q5VYS8 1495 aaKnown RBP16.36■□□□□ 0.21
RPL28-201ENST00000344063 GTF3C3Q9Y5Q9 886 aa16.28■□□□□ 0.2
RPL28-201ENST00000344063 RANGAP1P46060 587 aaPredicted RBP16.27■□□□□ 0.2
RPL28-201ENST00000344063 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.27■□□□□ 0.19
RPL28-201ENST00000344063 ERICH6Q7L0X2 663 aa16.22■□□□□ 0.19
RPL28-201ENST00000344063 DIEXFQ68CQ4 756 aaKnown RBP16.2■□□□□ 0.18
RPL28-201ENST00000344063 CCDC180Q9P1Z9 1646 aa16.18■□□□□ 0.18
RPL28-201ENST00000344063 SCAF1Q9H7N4 1312 aaKnown RBP16.12■□□□□ 0.17
RPL28-201ENST00000344063 ACIN1Q9UKV3 1341 aaKnown RBP16.08■□□□□ 0.17
RPL28-201ENST00000344063 DCAF1Q9Y4B6 1507 aa16.06■□□□□ 0.16
RPL28-201ENST00000344063 NEFLP07196 543 aa16.01■□□□□ 0.15
RPL28-201ENST00000344063 ABCC9O60706 1549 aa15.99■□□□□ 0.15
RPL28-201ENST00000344063 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
RPL28-201ENST00000344063 ATP1B4Q9UN42 357 aaPredicted RBP15.96■□□□□ 0.15
RPL28-201ENST00000344063 NEUROD1Q13562 356 aa15.94■□□□□ 0.14
RPL28-201ENST00000344063 MYO15BQ96JP2 1530 aa15.87■□□□□ 0.13
RPL28-201ENST00000344063 BCANQ96GW7 911 aa15.84■□□□□ 0.13
RPL28-201ENST00000344063 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
RPL28-201ENST00000344063 ITGAEP38570 1179 aa15.77■□□□□ 0.11
RPL28-201ENST00000344063 CSRNP3Q8WYN3 585 aa15.72■□□□□ 0.11
RPL28-201ENST00000344063 ZNF316A6NFI3 1004 aaPredicted RBP15.72■□□□□ 0.11
RPL28-201ENST00000344063 PABPN1Q86U42 306 aaKnown RBP eCLIP15.7■□□□□ 0.1
RPL28-201ENST00000344063 RSF1Q96T23 1441 aaPredicted RBP15.66■□□□□ 0.1
RPL28-201ENST00000344063 CNGB1Q14028 1251 aaPredicted RBP15.55■□□□□ 0.08
RPL28-201ENST00000344063 MIER1Q8N108 512 aa15.48■□□□□ 0.07
RPL28-201ENST00000344063 FAM50AQ14320 339 aaKnown RBP15.47■□□□□ 0.07
RPL28-201ENST00000344063 RB1CC1Q8TDY2 1594 aa15.44■□□□□ 0.06
RPL28-201ENST00000344063 NACADO15069 1562 aa15.43■□□□□ 0.06
RPL28-201ENST00000344063 EEA1Q15075 1411 aa15.41■□□□□ 0.06
RPL28-201ENST00000344063 POLR3GLQ9BT43 218 aa15.4■□□□□ 0.06
RPL28-201ENST00000344063 FKBP8Q14318 412 aa15.39■□□□□ 0.05
RPL28-201ENST00000344063 RTL5Q5HYW3 569 aaPredicted RBP15.38■□□□□ 0.05
RPL28-201ENST00000344063 CEP162Q5TB80 1403 aa15.33■□□□□ 0.05
RPL28-201ENST00000344063 CDK11AQ9UQ88 783 aaPredicted RBP15.32■□□□□ 0.04
RPL28-201ENST00000344063 CLSPNQ9HAW4 1339 aa15.31■□□□□ 0.04
RPL28-201ENST00000344063 ANP32CO43423 234 aa15.3■□□□□ 0.04
RPL28-201ENST00000344063 GOLGA3Q08378 1498 aa15.29■□□□□ 0.04
RPL28-201ENST00000344063 CLIP1P30622 1438 aa15.29■□□□□ 0.04
RPL28-201ENST00000344063 TNIKQ9UKE5 1360 aa15.29■□□□□ 0.04
RPL28-201ENST00000344063 DAXXQ9UER7 740 aaPredicted RBP15.27■□□□□ 0.03
RPL28-201ENST00000344063 CECR2Q9BXF3 1484 aa15.26■□□□□ 0.03
RPL28-201ENST00000344063 BAZ1AQ9NRL2 1556 aaPredicted RBP15.26■□□□□ 0.03
RPL28-201ENST00000344063 TRIM52Q96A61 297 aa15.24■□□□□ 0.03
RPL28-201ENST00000344063 ANP32EQ9BTT0 268 aa15.23■□□□□ 0.03
RPL28-201ENST00000344063 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
RPL28-201ENST00000344063 P3H3Q8IVL6 736 aa15.18■□□□□ 0.02
RPL28-201ENST00000344063 DDX10Q13206 875 aaKnown RBP15.17■□□□□ 0.02
RPL28-201ENST00000344063 CEP164Q9UPV0 1460 aa15.16■□□□□ 0.02
RPL28-201ENST00000344063 BCL11AQ9H165 835 aa15.16■□□□□ 0.02
RPL28-201ENST00000344063 MROH2BQ7Z745 1585 aa15.15■□□□□ 0.02
RPL28-201ENST00000344063 MYT1LQ9UL68 1186 aa15.12■□□□□ 0.01
RPL28-201ENST00000344063 IRX6P78412 446 aaPredicted RBP15.12■□□□□ 0.01
RPL28-201ENST00000344063 NBR1Q14596 966 aa15.12■□□□□ 0.01
RPL28-201ENST00000344063 SUPT16HQ9Y5B9 1047 aaKnown RBP15.1■□□□□ 0.01
RPL28-201ENST00000344063 TONSLQ96HA7 1378 aa15.07■□□□□ 0
RPL28-201ENST00000344063 NPM2Q86SE8 214 aaKnown RBP15.06■□□□□ 0
RPL28-201ENST00000344063 HIRIP3Q9BW71 556 aaPredicted RBP15.06■□□□□ 0
RPL28-201ENST00000344063 HNRNPUQ00839 825 aaKnown RBP eCLIP15.05■□□□□ 0
RPL28-201ENST00000344063 SOGA1O94964 1423 aa15.05■□□□□ -0
RPL28-201ENST00000344063 BAZ1BQ9UIG0 1483 aaKnown RBP15.05■□□□□ -0
RPL28-201ENST00000344063 EIF5BO60841 1220 aaKnown RBP15.04■□□□□ -0
RPL28-201ENST00000344063 CCDC88BA6NC98 1476 aa15.01□□□□□ -0.01
RPL28-201ENST00000344063 ANP32AP39687 249 aaKnown RBP15□□□□□ -0.01
RPL28-201ENST00000344063 KIF27Q86VH2 1401 aa14.98□□□□□ -0.01
RPL28-201ENST00000344063 ZNF326Q5BKZ1 582 aaKnown RBP14.97□□□□□ -0.01
RPL28-201ENST00000344063 ABCC8Q09428 1581 aa14.96□□□□□ -0.01
RPL28-201ENST00000344063 WIZO95785 1651 aa14.95□□□□□ -0.02
RPL28-201ENST00000344063 VPS8Q8N3P4 1428 aa14.93□□□□□ -0.02
RPL28-201ENST00000344063 TOP2AP11388 1531 aaKnown RBP14.93□□□□□ -0.02
RPL28-201ENST00000344063 FAM9BQ8IZU0 186 aa14.92□□□□□ -0.02
RPL28-201ENST00000344063 TSHZ2Q9NRE2 1034 aa14.92□□□□□ -0.02
RPL28-201ENST00000344063 MTUS2Q5JR59 1369 aa14.91□□□□□ -0.02
RPL28-201ENST00000344063 ARID3CA6NKF2 412 aa14.88□□□□□ -0.03
RPL28-201ENST00000344063 RBM19Q9Y4C8 960 aaKnown RBP14.85□□□□□ -0.03
RPL28-201ENST00000344063 CCNB3Q8WWL7 1395 aa14.84□□□□□ -0.03
RPL28-201ENST00000344063 RTN4Q9NQC3 1192 aaKnown RBP14.84□□□□□ -0.03
RPL28-201ENST00000344063 FBLN2P98095 1184 aa14.83□□□□□ -0.04
RPL28-201ENST00000344063 ZBTB47Q9UFB7 747 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms